MICROCIDE PHARMACEUTICALS INC
10-Q, 1998-11-16
PHARMACEUTICAL PREPARATIONS
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                                  UNITED STATES
                       SECURITIES AND EXCHANGE COMMISSION

                             Washington, D.C. 20549

                                    FORM 10-Q


(X)      QUARTERLY  REPORT  PURSUANT  TO SECTION  13 OR 15(d) OF THE  SECURITIES
         EXCHANGE ACT OF 1934 FOR THE QUARTERLY PERIOD ENDED SEPTEMBER 30, 1998


OR

( )      TRANSITION  REPORT  PURSUANT  TO  SECTION 13 OR 15(d) OF THE SECURITIES
         EXCHANGE ACT OF 1934


                         Commission file number: 0-28006


                         MICROCIDE PHARMACEUTICALS, INC.
             (Exact name of registrant as specified in its charter)


             Delaware                                          94-3186021
  (State or other jurisdiction                             (I.R.S. Employer
of incorporation of organization)                        Identification Number)

850 Maude Avenue, Mountain View, California                       94043
 (Address of principal executive offices)                      (ZIP Code)


Registrant's telephone number, including area code:           650-428-1550




Indicate by check mark whether the registrant (1) has filed all reports required
to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during
the  preceding 12 months (or for such  shorter  period that the  registrant  was
required  to file  such  reports),  and  (2) has  been  subject  to such  filing
requirements for the past 90 days.

                                   Yes X    No
                                      ---     ---

Number of shares of Common Stock,  no par value,  outstanding  as of October 30,
1998: 10,996,683.


<PAGE>


                         MICROCIDE PHARMACEUTICALS, INC.

                               INDEX FOR FORM 10-Q

                               SEPTEMBER 30, 1998


                                                                           PAGE
                                                                          NUMBER


PART I       FINANCIAL INFORMATION

Item 1.      Financial Statements and Notes

             Condensed Balance Sheets as of September 30, 1998                3
             and December 31, 1997

             Condensed Statements of Operations for the three and nine
             months ended September 30, 1998 and September 30, 1997           4

             Condensed Statements of Cash Flows for the nine months
             ended September 30, 1998 and September 30, 1997                  5

             Notes to Condensed Financial Statements                          6

Item 2.      Management's Discussion and Analysis of Financial
             Condition and Results of Operations                              8


PART II      OTHER INFORMATION                                                11

Item 1.      Legal Proceedings

Item 2.      Changes in Securities

Item 3.      Defaults in Senior Securities

Item 4.      Submission of Matters to a Vote of Security Holders

Item 5.      Other Information

Item 6.      Exhibits and Reports on Form 8-K


SIGNATURES                                                                    12

                                       -2-

<PAGE>


<TABLE>
                                                   MICROCIDE PHARMACEUTICALS, INC.

                                                      CONDENSED BALANCE SHEETS
                                                           (In thousands)

<CAPTION>
                                                                                                   September 30,        December 31,
                                                                                                        1998                1997
                                                                                                      --------             --------
                                                                                                     (unaudited)
<S>                                                                                                   <C>                  <C>     
ASSETS
     Current assets:
          Cash and cash equivalents                                                                   $  7,590             $ 11,763
          Short-term investments                                                                        22,928               28,624
          Receivables, prepaid expenses and other current assets                                         2,387                1,284
                                                                                                      --------             --------
     Total current assets                                                                               32,905               41,671
                                                                                                      --------             --------

          Property and equipment, net                                                                    9,927                9,540
          Other assets                                                                                     335                  571
                                                                                                      --------             --------
Total assets                                                                                          $ 43,167             $ 51,782
                                                                                                      ========             ========

LIABILITIES AND STOCKHOLDERS' EQUITY
     Current liabilities:
          Accounts payable                                                                            $    702             $  1,313
          Construction payable                                                                              17                  347
          Accrued compensation                                                                             840                  746
          Current portion of capital lease obligations                                                     268                  612
          Deferred revenue                                                                                 228                  786
          Other accrued liabilities                                                                        841                  632
                                                                                                      --------             --------
     Total current liabilities                                                                           2,896                4,436
                                                                                                      --------             --------

     Long-term portion of capital lease obligations                                                         47                  224
     Accrued rent                                                                                          177                  226


Stockholders' equity:
     Common stock                                                                                       66,799               66,930
     Deferred compensation                                                                                (588)              (1,251)
     Net unrealized gain (loss) on marketable securities                                                    31                  (44)
     Accumulated deficit                                                                               (26,195)             (18,739)
                                                                                                      --------             --------
Total stockholders' equity                                                                              40,047               46,896
                                                                                                      --------             --------

Total liabilities & stockholders' equity                                                              $ 43,167             $ 51,782
                                                                                                      ========             ========


<FN>
NOTE:  The balance  sheet at December  31, 1997 has been  derived from the audited  financial  statements  at that date but does not
include all of the information and footnotes required by generally accepted accounting principles for complete financial statements.

                                            See Notes to Condensed Financial Statements.
</FN>
</TABLE>

                                                                 -3-

<PAGE>


<TABLE>
                                                   MICROCIDE PHARMACEUTICALS, INC.

                                                 CONDENSED STATEMENTS OF OPERATIONS
                                              (In thousands, except per share amounts)
                                                             (Unaudited)

<CAPTION>
                                                                          Three Months Ended                 Nine Months Ended
                                                                              September 30,                    September 30,
                                                                        -------------------------         -------------------------
                                                                          1998             1997             1998             1997
                                                                        --------         --------         --------         --------
<S>                                                                     <C>              <C>              <C>              <C>     
Revenues
     License, milestone and other revenues                              $     43         $  1,054         $     43         $  2,054
     Research revenue                                                      2,800            3,024            8,635            9,125
                                                                        --------         --------         --------         --------

Total revenues                                                             2,843            4,078            8,678           11,179
                                                                        --------         --------         --------         --------


Operating expenses
     Research and development                                              4,723            5,078           14,599           13,515
     General and administrative                                              980            1,005            2,991            3,126
                                                                        --------         --------         --------         --------

Total operating expenses                                                   5,703            6,083           17,590           16,641
                                                                        --------         --------         --------         --------


Loss from operations                                                      (2,860)          (2,005)          (8,912)          (5,462)

Interest income, net                                                         456              624            1,456            1,869
                                                                        --------         --------         --------         --------

Net loss                                                                $ (2,404)        $ (1,381)        $ (7,456)        $ (3,593)
                                                                        ========         ========         ========         ========


Net loss per share                                                      $  (0.22)        $  (0.13)        $  (0.68)        $  (0.33)
                                                                        ========         ========         ========         ========

Shares used in calculation of net loss per share                          10,972           10,843           10,951           10,800

<FN>
                                            See Notes to Condensed Financial Statements.
</FN>
</TABLE>

                                                                 -4-

<PAGE>



<TABLE>
                                                   MICROCIDE PHARMACEUTICALS, INC.

                                                 CONDENSED STATEMENTS OF CASH FLOWS
                                          Increase (decrease) in cash and cash equivalents
                                                           (In thousands)

<CAPTION>
                                                                                                          Nine Months Ended
                                                                                                             September 30,
                                                                                                     ------------------------------
                                                                                                       1998                  1997
                                                                                                     --------              --------
<S>                                                                                                  <C>                   <C>      
Cash flows used in operating activities:
     Net loss                                                                                        $ (7,456)             $ (3,593)
     Adjustments to reconcile net loss to net cash provided by
       (used in) operating activities:
          Depreciation and amortization                                                                 2,241                 2,231
          Amortization of deferred compensation                                                           401                   446
          Accrued rent                                                                                    (49)                   81
          Net unrealized gain (loss) on securities                                                         75                   (70)
     Changes in assets and liabilities:
          Receivables, prepaid expenses and other current assets                                       (1,103)               (1,032)
          Other assets                                                                                    236                  (414)
          Construction payable                                                                           (330)                 (209)
          Accounts payable                                                                               (611)                 (566)
          Accrued compensation and other accrued liabilities                                              303                   550
          Deferred revenue                                                                               (558)                 (145)
                                                                                                     --------              --------
Net cash used in operating activities                                                                  (6,851)               (2,721)
                                                                                                     --------              --------

Cash flows provided by investing activities:
     Purchase of short-term investments                                                               (13,797)              (21,289)
     Maturities of short-term investments                                                              19,493                25,710
     Capital expenditures                                                                              (2,628)               (2,508)
                                                                                                     --------              --------
Net cash provided by investing activities                                                               3,068                 1,913
                                                                                                     --------              --------

Cash flows used in financing activities:
     Principal payments on capital lease obligations                                                     (521)                 (843)
     Repayment of shareholder note                                                                       --                      35
     Net proceeds from issuance of common stock                                                           131                   148
                                                                                                     --------              --------
Net cash used in financing activities                                                                    (390)                 (660)
                                                                                                     --------              --------

Net decrease in cash and cash equivalents                                                              (4,173)               (1,468)
Cash and cash equivalents at beginning of period                                                       11,763                 8,317
                                                                                                     --------              --------
Cash and cash equivalents at end of period                                                           $  7,590              $  6,849
                                                                                                     ========              ========

Supplemental disclosure of cash flow information:
     Income taxes paid                                                                               $      2              $     22
                                                                                                     ========              ========
     Interest paid                                                                                   $     21              $    116
                                                                                                     ========              ========

<FN>
                                            See Notes to Condensed Financial Statements.
</FN>
</TABLE>

                                                                 -5-

<PAGE>



                         MICROCIDE PHARMACEUTICALS, INC.

                     NOTES TO CONDENSED FINANCIAL STATEMENTS

                               September 30, 1998
                                   (Unaudited)


1.  Summary of Significant Accounting Policies
    Organization and Basis of Presentation

         Microcide Pharmaceuticals,  Inc. (the "Company") is a biopharmaceutical
company  whose  mission  is  to  discover,   develop  and  commercialize   novel
antimicrobials for the improved treatment of serious bacterial, fungal and viral
infections. The Company's discovery and development programs address the growing
problem of bacterial drug  resistance  and the need for improved  antifungal and
antiviral agents through two principal themes: (i) Targeted  Antibiotics,  which
focuses on developing novel antibiotics and antibiotic  potentiators to directly
address existing  bacterial  resistance  problems,  and (ii) Targeted  Genomics,
which utilizes  bacterial,  fungal and viral genetics to discover new classes of
antimicrobials and other novel treatments for infectious diseases.

         The accompanying  unaudited  condensed  financial  statements have been
prepared in accordance with generally accepted accounting principles for interim
financial  information and with the  instructions to Form 10-Q and Rule 10-01 of
Regulation  S-X.  Accordingly,  they do not include all of the  information  and
footnotes  required by generally  accepted  accounting  principles  for complete
financial statements. In the opinion of management,  all adjustments (consisting
of normal recurring accruals)  considered necessary for a fair presentation have
been included.  The results of operations  for the interim  periods shown herein
are not necessarily indicative of operating results for the entire year.

         This unaudited  financial  data should be read in conjunction  with the
financial  statements and footnotes  contained in the Company's annual report on
Form 10-K for the year ended December 31, 1997.

2.  Investments

         Investment securities are classified as  available-for-sale  (estimated
fair value) and consist of the following investments (in thousands):

                                                September 30,   December 31,
                                                     1998            1997     
                                                 ----------       ----------
Cash equivalents and short-term investments:
         Money market funds                      $    5,620       $    2,133
         Corporate debt securities                   22,928           37,417
                                                 ----------       ----------
                                                 $   28,548       $   39,550
                                                 ==========       ==========

                                      -6-

<PAGE>

3.  Per Share Information

         Effective December 31, 1997, the Company adopted Statement of Financial
Accounting  Standards  No. 128  "Earnings  per  Share"  ("SFAS  128").  SFAS 128
requires  the  presentation  of basic  earnings  (loss)  per share  and  diluted
earnings  (loss) per share,  if more  dilutive,  for all periods  presented.  In
accordance  with SFAS 128,  basic net loss per share has been computed using the
weighted-average number of shares of Common Stock outstanding during the period.
Diluted net loss per share has not been presented;  given the Company's net loss
position, the result would be anti-dilutive.

4.  Changes in Accounting Standards

         As of January 31,  1998,  the Company  adopted  Statement  of Financial
Accounting Standards No. 130 "Reporting Comprehensive Income" ("SFAS 130"). SFAS
130 established new rules for the reporting and display of comprehensive  income
and its components; however, the adoption of this Statement has no impact on the
Company's  net loss or  stockholders'  equity.  SFAS 130  requires,  among other
things, unrealized gains or losses on the Company's securities to be included in
comprehensive  income or loss.  During the nine months ended  September 30, 1998
and  1997,  the  Company's   comprehensive   loss  amounted  to  $7,381,000  and
$3,663,000, respectively.

                                      -7-

<PAGE>


                         MICROCIDE PHARMACEUTICALS, INC.

         Management's Discussion and Analysis of Financial Condition and
                              Results of Operations

Overview

         As  part  of  the  Company's  strategy  to  enhance  its  research  and
development  capabilities  and to  fund,  in  part,  its  capital  requirements,
Microcide   has  entered  into   collaborative   agreements   with  three  major
pharmaceutical  companies.  The  Company has  received  license  fees,  research
support  payments and milestone  payments  pursuant to these  agreements and can
potentially receive additional research support payments,  additional  milestone
payments and royalty payments. License fees are typically nonrefundable up-front
payments for licenses to develop,  manufacture and market products, if any, that
are developed as a result of the  collaboration.  Research  support payments are
typically contractually obligated payments to fund research and development over
the term of the collaboration.  Milestone payments are payments  contingent upon
the  achievement  of specified  milestones,  such as selection of candidates for
drug  development,  the commencement of clinical trials or receipt of regulatory
approvals. If drugs are successfully developed and commercialized as a result of
the  collaborative  agreements,  the Company will receive royalty payments based
upon the net sales of such drugs.

         Through  September 30, 1998,  the Company had received in the aggregate
$38.9 million in license fees,  milestone payments and research support payments
under the collaborative agreements.  Assuming none of the existing collaborative
agreements is terminated prior to its scheduled expiration,  the Company will be
entitled  to receive up to an  additional  $15.8  million  of  research  support
payments. In addition, in the event that any of the collaborative agreements are
extended  beyond their  current  terms,  the Company will be entitled to receive
additional research support payments.

         In the event that the  Company  achieves  the  specified  research  and
product  development  milestones,  the  Company  will  be  entitled  to  receive
milestone  payments  under its  collaborative  agreements  with the three  major
pharmaceutical  companies  ranging  from  $13.0  million  to $32.5  million  per
product.  No royalty  payments  have yet been  received and the Company does not
expect to receive  royalties based upon the net sales of drugs for a significant
number of years, if ever.

         Quarterly results of operations are subject to significant fluctuations
based  on  the  timing  and  amount  of  certain   revenues   earned  under  the
collaborative  agreements.  The Company expects to incur operating losses in the
future.

         This Form 10-Q contains  forward-looking  statements based upon current
expectations,  including  statements  with  regard to the  potential  receipt of
additional research support payments,  milestone payments and royalties from the
Company's collaborative partners, and the period of time for which the Company's
existing capital  resources and future payments under  collaborative  agreements
will be sufficient to satisfy the Company's funding  requirements,  expectations
concerning  the  Company's  future  research  and  development  and  general and
administrative  expenses and the potential  impact of the Year 2000 issue.  Such
forward-looking  statements  involve risk and  uncertainties,  including without
limitation,  the risk  that the  Company's  collaborations  will be  terminated,
development candidates will not be identified,  development candidates which are
selected will not proceed through pre-clinical trials or will not prove safe and
effective   for   treatment   of  humans  in  clinical   trials,   or  that  the
identification,  selection,  manufacture,  pre-clinical, and clinical testing of
development  candidates will take substantially  longer or be substantially more
expensive than contemplated by the Company, or that the Company will not be able
to  obtain  on a timely  basis  government  regulatory  clearance  required  for
clinical testing, manufacturing, and marketing of its products, or that the Year
2000 issue will have a material  impact on the Company,  and the other risks and
uncertainties set forth in the Company's annual report on Form 10-K for the year
ended  December  31,  1997.  Actual  results and timing of certain  events could
differ  materially from those indicated in the  forward-looking  statements as a
result of these or other factors.

                                      -8-

<PAGE>


Results of Operations

Three Months Ended September 30, 1998 and 1997

Revenues.  Total  revenues for the third  quarter of 1998 were $2.8  million,  a
decrease  of 30% from the $4.1  million  in  revenues  recognized  in the  third
quarter of 1997;  the  decrease  was largely due to $1.0  million in  additional
revenues  associated with the sale of molecular  diversity  samples in the third
quarter of 1997 as compared to the third quarter of 1998. In addition,  research
support  revenue  decreased  $0.2  million  in the  third  quarter  of 1998  due
primarily  to lower  revenues  earned from the Daiichi  collaborative  agreement
resulting from a decrease in reimbursable costs associated with the program.

Research and Development  Expenses.  Research and  development  expenses for the
third  quarter  decreased  approximately  8% from $5.1  million  in 1997 to $4.7
million  in 1998.  The  decrease was due  primarily  to lower  costs  related to
assembling the Company's molecular  diversity  collection and lower expenses for
research  supplies and materials,  partially  offset by higher  compensation and
other  employee-related  expenses  associated  with an increase in  headcount to
support the Company's corporate collaborations and its internal programs, higher
costs  relating to  expanded  research  and  development  facilities,  and costs
associated with providing research support to Iconix Pharmaceuticals  related to
the viral research program.  Research and development  expenses are not expected
to materially change in the fourth quarter.

General and Administrative Expenses. General and administrative expenses for the
third  quarter were  approximately  equal at $1.0 million in both 1997 and 1998.
General and administrative expenses are not expected to materially change in the
fourth quarter.

Interest  Income,  net.  Interest  income for the third quarter  decreased  from
$665,000  in 1997 to $462,000  in 1998,  primarily  due to a decrease in average
cash balances.  Interest expense for the third quarter decreased from $41,000 in
1997 to $6,000 in 1998 due to a decrease in capital lease balances outstanding.

Nine Months Ended September 30, 1998 and 1997

Revenues.  Total revenues for the first nine months of 1998 were $8.7 million, a
decrease  of 22% from $11.2  million in  revenues  for the first nine  months of
1997; the decrease was primarily due to an additional  $2.0 million in milestone
payments and revenues  associated with the sales of molecular  diversity samples
in the first nine  months of 1997 as  compared to the first nine months of 1998.
In addition,  research  support  revenue  decreased $0.5 million  primarily as a
result  of lower  revenues  earned  from  the  Daiichi  collaborative  agreement
resulting from a decrease in reimbursable costs associated with the program.

Research and Development  Expenses.  Research and  development  expenses for the
first nine months of 1998 were $14.6 million,  an increase of  approximately  8%
from $13.5 million in the first nine months of 1997,  primarily due to increased
compensation and other employee-related  expenses associated with an increase in
headcount to support the  Company's  corporate  collaborations  and its internal
programs,  higher costs relating to expanded research and development facilities
and costs associated with providing  research support to Iconix  Pharmaceuticals
related  to the viral  research  program,  partially  offset  by lower  expenses
related to assembling the Company's molecular diversity  collection,  as well as
lower expenses for research supplies.

General and Administrative Expenses. General and administrative expenses for the
first nine months of 1998 decreased  approximately  4% from $3.1 million in 1997
to $3.0 million in 1998. Decreased expenses primarily consisted of lower payroll
and related expenses and lower operational costs partially offset by an increase
in outside service expenses  associated with legal and insurance  activities and
higher costs related to expansion of facilities.

Interest  Income,  net.  Interest  income  for the  first  nine  months  of 1998
decreased from $2.0 million in 1997 to $1.5 million in 1998,  primarily due to a
decrease in average cash balances.  Interest expense  decreased from $134,000 in
the first nine months of 1997 to $21,000 in the first nine months of 1998 due to
a decrease in capital lease balances outstanding.

                                      -9-

<PAGE>


Liquidity and Capital Resources

         The Company has  financed  its  operations  since  inception  primarily
through  the  sale  of  equity,   through  funds  provided  under  collaborative
agreements,  through other revenues principally consisting of sales of molecular
diversity samples and through equipment financing.  As of September 30, 1998 the
Company had received  approximately  $64.5 million in net proceeds from the sale
of equity and  approximately  $38.9  million  from  license  fees and  milestone
payments,  research support payments under collaborative agreements and sales of
molecular diversity samples.

         Cash, cash equivalents and short-term investments at September 30, 1998
were $30.5 million  compared to $40.4 million at December 31, 1997. The decrease
during  the  first  nine  months  of 1998  was  due  primarily  to cash  used by
operations of $6.9 million,  $2.6 million in capital  expenditures  and $390,000
utilized in  financing  activities  which  predominantly  consisted of principal
payments on capital lease obligations.

         The Company  believes  that its existing  capital  resources,  interest
income and future  payments due under  collaborative  agreements will enable the
Company to maintain current and planned operations at least through 1999.


Impact of Year 2000

         The "Year 2000" issue  generally  describes the various  problems which
may  result  from  the   improper   processing   of  dates  and   date-sensitive
calculations.   Computers  and  other  equipment   containing   computer-related
components (such as programmable  logic  controllers and other embedded systems)
using two digits to identify  the year in a date may not be able to  distinguish
between  dates in the 20th  century  versus the 21st  century.  This issue could
cause  system or  equipment  malfunctions  resulting  in  material  and  adverse
interruptions in operations.

         The Company has begun to assess the  potential  impact of the Year 2000
computer problem on its computer systems, research equipment with embedded chips
or software,  and on the ability of third parties to supply  critical  materials
and services.  The Company has completed the assessment of its computer  systems
and believes them to be Year 2000 compliant. The Company expects to complete the
assessment  of its  embedded  systems and certain  third party  suppliers by the
second quarter of 1999, and to take necessary  remediation  action by the end of
1999.  Expenditures to date have not been material and have consisted  solely of
the time of certain company personnel. Based on the partial assessment completed
through  September 30, 1998,  the Company does not  currently  expect the future
costs of completing  the  assessment and making  equipment  modifications  to be
material.  Although the Company  believes  its key  financial,  information  and
operational  systems are Year 2000  compliant,  there can be no assurances  that
other  defects will not be  discovered  in the future.  The Company is unable to
control  whether the firms and vendors it does business with  currently,  and in
the future,  will have  systems  which are Year 2000  compliant.  The  Company's
operations  could be  affected  to the extent  that firms and  vendors  would be
unable to  provide  services  or ship  products.  However,  management  does not
believe  the Year 2000  changes  will have a  material  impact on its  business,
financial condition or results of operations.

                                      -10-

<PAGE>

PART II      OTHER INFORMATION

Item 1.      Legal Proceedings

             None.

Item 2.      Changes in Securities

             None.

Item 3.      Defaults in Senior Securities

             None.

Item 4.      Submission of Matters to a Vote of Security Holders

             None.

Item 5.      Other Information

             Deadline for Receipt of Stockholder Proposals

             Stockholders  are  entitled  to present  proposals  for action at a
             forthcoming  meeting if they  comply with the  requirements  of the
             proxy rules established by the Securities and Exchange  Commission.
             Proposals  of  stockholders  of the Company that are intended to be
             presented by such stockholders at the Company's 1999 Annual Meeting
             of  Stockholders  must be  received  by the  Company  no later than
             December  31,  1998  in  order  that  they  may be  considered  for
             inclusion in the proxy statement and form of proxy relating to that
             meeting.

             If a  stockholder  intends  to submit a proposal  at the  Company's
             Annual  Meeting,  which is not eligible for  inclusion in the proxy
             statement  relating to that meeting,  the stockholder must give the
             Company notice in accordance with the requirements set forth in the
             Securities Exchange Act of 1934, as amended, no later than February
             14, 1999. If such a stockholder  fails to comply with the foregoing
             notice  provision,  the proxy  holders will be allowed to use their
             discretionary  authority  when and if the proposal is raised at the
             Company's Annual Meeting in 1999.

Item 6.      Exhibits and Reports on Form 8-K

     (a)     The following exhibits have been filed with this report:

              27.1     Financial Data Schedule

     (b)     Reports on Form 8-K.

             No  reports  on Form  8-K  were  filed  during  the  quarter  ended
             September 30, 1998.


                                      -11-

<PAGE>

                                   SIGNATURES


         Pursuant to the  requirements  of the Securities  Exchange Act of 1934,
the  registrant  has duly  caused  this report to be signed on its behalf by the
undersigned, thereunto duly authorized.


Dated:   November 16, 1998




                                 MICROCIDE PHARMACEUTICALS, INC.
                                 -------------------------------
                                 (Registrant)


                                   /s/  James E. Rurka
                                 ---------------------
                                 President, Chief Executive Officer and Director
                                 (principal executive officer)




                                   /s/  Matthew J. Hogan
                                 -----------------------
                                 Chief Financial Officer
                                 (principal financial and accounting officer)

                                      -12-


<TABLE> <S> <C>


<ARTICLE>                     5
<CIK>                         0001010915
<NAME>                        MICROCIDE PHARMACEUTICALS, INC.
<MULTIPLIER>                  1,000
<CURRENCY>                    U.S. DOLLARS
       
<S>                           <C>
<PERIOD-TYPE>                 3-MOS
<FISCAL-YEAR-END>                              DEC-31-1998
<PERIOD-START>                                 JUL-01-1998
<PERIOD-END>                                   Sep-30-1998
<EXCHANGE-RATE>                                     1
<CASH>                                          1,970
<SECURITIES>                                   28,548
<RECEIVABLES>                                   1,743
<ALLOWANCES>                                        0
<INVENTORY>                                         0
<CURRENT-ASSETS>                               32,905
<PP&E>                                         18,884
<DEPRECIATION>                                  8,957
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