MICROCIDE PHARMACEUTICALS INC
10-Q, 1999-05-14
PHARMACEUTICAL PREPARATIONS
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                                  UNITED STATES
                       SECURITIES AND EXCHANGE COMMISSION

                             Washington, D.C. 20549


                                    FORM 10-Q



(X)  QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE
     ACT OF 1934 FOR THE QUARTERLY PERIOD ENDED MARCH 31, 1999

                                       OR

( )  TRANSITION  REPORT  PURSUANT  TO  SECTION  13 OR  15(d)  OF THE  SECURITIES
     EXCHANGE ACT OF 1934


                         Commission file number: 0-28006


                         MICROCIDE PHARMACEUTICALS, INC.
             (Exact name of registrant as specified in its charter)


                 Delaware                                    94-3186021
      (State or other jurisdiction of                    (I.R.S. Employer
       incorporation of organization)                   Identification Number)

   850 Maude Avenue, Mountain View, California                   94043
    (Address of principal executive offices)                   (ZIP Code)


 Registrant's telephone number, including area code:          650-428-1550



Indicate by check mark whether the registrant (1) has filed all reports required
to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during
the  preceding 12 months (or for such  shorter  period that the  registrant  was
required  to file  such  reports),  and  (2) has  been  subject  to such  filing
requirements for the past 90 days.

                               Yes  X       No
                                   ---         ---

Number of shares of Common Stock,  no par value,  outstanding as of May 4, 1999:
11,068,662.


<PAGE>


                         MICROCIDE PHARMACEUTICALS, INC.

                               INDEX FOR FORM 10-Q

                                 MARCH 31, 1999


                                                                           PAGE
                                                                          NUMBER

PART I            FINANCIAL INFORMATION

Item 1.           Financial Statements and Notes

                  Condensed Balance Sheets as of March 31, 1999
                  and December 31, 1998                                        3

                  Condensed Statements of Operations for the three
                  months ended March 31, 1999 and March 31, 1998               4

                  Condensed Statements of Cash Flows for the three months
                  ended March 31, 1999 and March 31, 1998                      5

                  Notes to Condensed Financial Statements                      6

Item 2.           Management's Discussion and Analysis of Financial
                  Condition and Results of Operations                          7


PART II           OTHER INFORMATION                                           10

Item 1.           Legal Proceedings

Item 2.           Changes in Securities

Item 3.           Defaults in Senior Securities

Item 4.           Submission of Matters to a Vote of Security Holders

Item 5.           Other Information

Item 6.           Exhibits and Reports on Form 8-K


SIGNATURES                                                                    11


                                      -2-
<PAGE>



<TABLE>
                                                   MICROCIDE PHARMACEUTICALS, INC.

                                                      CONDENSED BALANCE SHEETS
                                                           (in thousands)
<CAPTION>


                                                                                                     March 31,          December 31,
                                                                                                       1999                  1998
                                                                                                     --------              --------
                                                                                                   (Unaudited)              (Note)
<S>                                                                                                  <C>                   <C>
ASSETS

Current assets:
    Cash and cash equivalents                                                                        $  4,877              $  7,794
    Short-term investments                                                                             24,272                25,398
    Receivables, prepaid expenses and other current assets                                              2,110                   590
                                                                                                     --------              --------
Total current assets                                                                                   31,259                33,782

Property and equipment, net                                                                             9,293                 9,755

Other assets                                                                                              969                   953
                                                                                                     --------              --------

Total assets                                                                                         $ 41,521              $ 44,490
                                                                                                     ========              ========

LIABILITIES AND STOCKHOLDERS' EQUITY

Current liabilities:
    Accounts payable                                                                                 $    405              $    642
    Accrued compensation                                                                                  789                   920
    Current portion of notes payable                                                                    1,231                 1,129
    Deferred revenue                                                                                      364                   300
    Other accrued liabilities                                                                             556                   522
                                                                                                     --------              --------
Total current liabilities                                                                               3,345                 3,513

Long-term portion of notes payable                                                                      2,594                 2,912
Accrued rent                                                                                              240                   127

Stockholders' equity:
    Common stock                                                                                       66,903                66,902
    Deferred compensation                                                                                (338)                 (464)
    Accumulated deficit                                                                               (31,220)              (28,497)
    Accumulated other comprehensive loss                                                                   (3)                   (3)
                                                                                                     --------              --------

Total stockholders' equity                                                                             35,342                37,938
                                                                                                     --------              --------

Total liabilities and stockholders' equity                                                           $ 41,521              $ 44,490
                                                                                                     ========              ========


<FN>

NOTE:  The balance  sheet at December  31, 1998 has been  derived from the audited  financial  statements  at that date but does not
include all of the information and footnotes required by generally accepted accounting principles for complete financial statements.

                                           See Notes to Condensed Financial Statements.

</FN>
</TABLE>


                                                                -3-
<PAGE>



                         MICROCIDE PHARMACEUTICALS, INC.

                       CONDENSED STATEMENTS OF OPERATIONS
                    (in thousands, except per share amounts)
                                   (unaudited)


                                                             Three Months Ended
                                                                 March 31,
                                                          ----------------------
                                                            1999         1998
                                                          --------     --------

Revenues:
    License, milestone and other revenues                 $    299     $   --
    Research revenue                                         2,393        3,035
                                                          --------     --------
Total revenues                                               2,692        3,035

Operating expenses:
    Research and development                                 4,748        5,061
    General and administrative                               1,005        1,058
                                                          --------     --------
Total operating expenses                                     5,753        6,119
                                                          --------     --------

Loss from operations                                        (3,061)      (3,084)

Interest income                                                409          526
Interest and other expense                                     (71)         (18)
                                                          --------     --------

Net loss                                                  $ (2,723)    $ (2,576)
                                                          ========     ========

Net loss per share                                        $  (0.25)    $  (0.24)
                                                          ========     ========

Shares used in calculation of net loss per share            11,026       10,929


                  See Notes to Condensed Financial Statements.


                                      -4-

<PAGE>



<TABLE>
                                                   MICROCIDE PHARMACEUTICALS, INC.


                                                 CONDENSED STATEMENTS OF CASH FLOWS
                                          Increase (decrease) in cash and cash equivalents
                                                             (unaudited)

<CAPTION>

                                                                                                            Three Months Ended
                                                                                                                 March 31,
                                                                                                     -------------------------------
                                                                                                       1999                 1998
                                                                                                     --------              --------
<S>                                                                                                  <C>                   <C>
Cash flows used in operating activities:
Net loss                                                                                             $ (2,723)             $ (2,576)
Adjustments to reconcile net loss to net cash
    provided by (used in) operating activities:
       Depreciation and amortization                                                                      694                   787
       Amortization of deferred compensation                                                              126                   132
       Accrued rent                                                                                       113                    35
       Net unrealized loss on securities                                                                 --                     (31)
Changes in assets and liabilities:
    Receivables, prepaid expenses and other current assets                                             (1,520)                  305
    Other assets                                                                                          (16)                 (113)
    Accounts payable                                                                                     (237)                 (776)
    Construction payable                                                                                 --                    (347)
    Accrued compensation and other accrued liabilities                                                    (97)                  221
    Deferred revenue                                                                                       64                  (154)
                                                                                                     --------              --------
Net cash used in operating activities                                                                  (3,596)               (2,517)
                                                                                                     --------              --------

Cash flows used in investing activities:
Purchase of short-term investments                                                                     (6,174)              (26,746)
Maturities of short-term investments                                                                    7,300                25,075
Capital expenditures                                                                                     (232)                 (632)
                                                                                                     --------              --------
Net cash provided by (used in) investing activities                                                       894                (2,303)
                                                                                                     --------              --------

Cash flows from financing activities:
Principal payments on notes payable                                                                      (216)                 (234)
Net proceeds from issuance of common stock                                                                  1                    10
                                                                                                     --------              --------
Net cash used in financing activities                                                                    (215)                 (224)
                                                                                                     --------              --------

Net decrease in cash and cash equivalents                                                              (2,917)               (5,044)
Cash and cash equivalents, beginning of period                                                          7,794                11,763
                                                                                                     --------              --------
Cash and cash equivalents, end of period                                                             $ 4 ,877              $  6,719
                                                                                                     ========              ========

Supplemental disclosure of cash flow information:
Income taxes paid                                                                                    $      1              $      2
                                                                                                     ========              ========
Interest paid                                                                                        $     71              $     18
                                                                                                     ========              ========

<FN>
                               See Notes to Condensed Financial Statements.

</FN>
</TABLE>


                                                                -5-
<PAGE>


                         MICROCIDE PHARMACEUTICALS, INC.

                     NOTES TO CONDENSED FINANCIAL STATEMENTS

                                 March 31, 1999
                                   (Unaudited)


1. Summary of Significant Accounting Policies

     Organization and Basis of Presentation

         Microcide Pharmaceuticals,  Inc. (the "Company") is a biopharmaceutical
company  whose  mission  is  to  discover,   develop  and  commercialize   novel
antimicrobials for the improved treatment of serious bacterial, fungal and viral
infections. The Company's discovery and development programs address the growing
problem of bacterial drug  resistance  and the need for improved  antifungal and
antiviral agents through two principal themes: (i) Targeted  Antibiotics,  which
focuses on developing novel antibiotics and antibiotic  potentiators to directly
address existing  bacterial and fungal  resistance  problems,  and (ii) Targeted
Genomics,  which utilizes  bacterial,  fungal and viral genetics to discover new
classes of antimicrobials and other novel treatments for infectious diseases.

         The accompanying  unaudited  condensed  financial  statements have been
prepared in accordance with generally accepted accounting principles for interim
financial  information and with the  instructions to Form 10-Q and Rule 10-01 of
Regulation  S-X.  Accordingly,  they do not include all of the  information  and
footnotes  required by generally  accepted  accounting  principles  for complete
financial statements. In the opinion of management,  all adjustments (consisting
of normal recurring accruals)  considered necessary for a fair presentation have
been included.  The results of operations  for the interim  periods shown herein
are not necessarily indicative of operating results for the entire year.

         This unaudited  financial  data should be read in conjunction  with the
financial  statements and footnotes  contained in the Company's annual report on
Form 10-K for the year ended December 31, 1998.

2. Per Share Information

         Effective December 31, 1997, the Company adopted Statement of Financial
Accounting  Standards  No. 128  "Earnings  per  Share"  ("SFAS  128").  SFAS 128
requires  the  presentation  of basic  earnings  (loss)  per share  and  diluted
earnings  (loss) per share,  if more  dilutive,  for all periods  presented.  In
accordance  with SFAS 128,  basic net loss per share has been computed using the
weighted-average number of shares of Common Stock outstanding during the period.
Diluted net loss per share has not been presented;  given the Company's net loss
position, the result would be anti-dilutive.

         Effective  January 31, 1998, the Company adopted Statement of Financial
Accounting Standards No. 130 "Reporting Comprehensive Income" ("SFAS 130"). SFAS
130 established new rules for the reporting and display of comprehensive  income
and its components; however, the adoption of this Statement has no impact on the
Company's  net loss or  stockholders'  equity.  SFAS 130  requires,  among other
things, unrealized gains or losses on the Company's securities to be included in
comprehensive  income or loss.  During the three months ended March 31, 1999 and
1998, the Company's  comprehensive  loss amounted to $2,723,000 and  $2,607,000,
respectively.


                                      -6-

<PAGE>


                         MICROCIDE PHARMACEUTICALS, INC.

         Management's Discussion and Analysis of Financial Condition and
                              Results of Operations

Overview

         As  part  of  the  Company's  strategy  to  enhance  its  research  and
development  capabilities  and to  fund,  in  part,  its  capital  requirements,
Microcide   has  entered  into   collaborative   agreements   with  three  major
pharmaceutical  companies.  The  Company has  received  license  fees,  research
support  payments and milestone  payments  pursuant to these  agreements and can
potentially receive additional research support payments,  additional  milestone
payments and royalty payments. License fees are typically nonrefundable up-front
payments for licenses to develop,  manufacture and market products, if any, that
are developed as a result of the  collaboration.  Research  support payments are
typically contractually obligated payments to fund research and development over
the term of the collaboration.  Milestone payments are payments  contingent upon
the  achievement  of specified  milestones,  such as selection of candidates for
drug  development,  the commencement of clinical trials or receipt of regulatory
approvals. If drugs are successfully developed and commercialized as a result of
the  collaborative  agreements,  the Company will receive royalty payments based
upon the net sales of such drugs.  In  addition,  the Company has derived  other
revenues  principally  through the sale of molecular  diversity samples to other
pharmaceutical and biotechnology companies for use in their research programs.

         In January 1999, the Company expanded its existing  antibiotic research
collaboration  with Pfizer to include a focused  effort to discover  and develop
new classes of antibiotics specifically designed for animal health applications.
The agreement  provides for certain  revenue  payments,  including  payments for
research and development costs for three years and for reaching certain research
and development goals.  Pfizer received  exclusive  worldwide rights to products
developed during the collaboration.  The development,  manufacturing,  marketing
and sale of drugs resulting from the collaboration  will be conducted by Pfizer,
subject to the  Company's  right to co-promote  such products in North  America.
Should the development efforts result in a marketable product,  the Company will
receive royalty payments based on product sales.

         Through March 31, 1999, the Company had received in the aggregate $42.3
million in license fees,  milestone payments and research support payments under
the  collaborative  agreements.  Assuming  none  of the  existing  collaborative
agreements is terminated prior to its scheduled expiration,  the Company will be
entitled  to receive up to an  additional  $11.5  million  of  research  support
payments,  including payments related to the Pfizer Animal Health collaboration.
In addition, in the event that  any of the collaborative  agreements is extended
beyond  its current term,  the Company will  be  entitled to receive  additional
research support payments.

         In the event that the  Company  achieves  the  specified  research  and
product  development  milestones,  the  Company  will  be  entitled  to  receive
milestone  payments  under its  collaborative  agreements  with the three  major
pharmaceutical  companies  ranging  from  $13.0  million  to $32.5  million  per
product.  No royalty  payments  have yet been  received and the Company does not
expect to receive  royalties based upon the net sales of drugs for a significant
number of years, if ever.

         Quarterly results of operations are subject to significant fluctuations
based  on  the  timing  and  amount  of  certain   revenues   earned  under  the
collaborative  agreements.  The Company expects to incur operating losses in the
future.


                                      -7-
<PAGE>

         This Form 10-Q contains  forward-looking  statements based upon current
expectations,  including  statements  with  regard to the  potential  receipt of
additional research support payments,  milestone payments and royalties from the
Company's collaborative partners, and the period of time for which the Company's
existing capital  resources and future payments under  collaborative  agreements
will be sufficient to satisfy the Company's funding  requirements,  expectations
concerning  the  Company's  future  research  and  development  and  general and
administrative  expenses,  and the potential impact of the Year 2000 issue. Such
forward-looking  statements  involve risk and  uncertainties,  including without
limitation,  the risk  that the  Company's  collaborations  will be  terminated,
development candidates will not be identified,  development candidates which are
selected will not proceed through pre-clinical trials or will not prove safe and
effective   for   treatment   of  humans  in  clinical   trials,   or  that  the
identification,  selection,  manufacture,  pre-clinical, and clinical testing of
development  candidates will take substantially  longer or be substantially more
expensive than contemplated by the Company, or that the Company will not be able
to  obtain  on a timely  basis  government  regulatory  clearance  required  for
clinical testing, manufacturing, and marketing of its products, or that the Year
2000 issue will have a material  impact on the Company,  and the other risks and
uncertainties set forth in the Company's annual report on Form 10-K for the year
ended  December  31,  1998.  Actual  results and timing of certain  events could
differ  materially from those indicated in the  forward-looking  statements as a
result of these or other factors.

Results of Operations

Three Months Ended March 31, 1999 and March 31, 1998

Revenues.  Total  revenues for the first  quarter of 1999 were $2.7  million,  a
decrease  of 11% from the $3.0  million  in  revenues  recognized  in the  first
quarter of 1998;  the decrease  was due to lower  revenues  recognized  from the
Company's collaborations with Daiichi and Johnson & Johnson, partially offset by
additional revenues from the Pfizer Animal Health  collaboration and the sale of
molecular diversity samples to Iconix  Pharmaceuticals.  Revenues related to the
sale of molecular diversity samples to Iconix were exactly offset by an increase
in expenses charged to Microcide as part of the antiviral research collaboration
with Iconix.

Research and Development  Expenses.  Research and  development  expenses for the
first  quarter  decreased  approximately  6% from $5.1  million  in 1998 to $4.7
million in 1999.  The  decrease  was due  primarily  to lower  costs  related to
assembling  the Company's  molecular  diversity  collection,  lower expenses for
research  supplies and  materials,  and lower  expenses  for outside  consulting
services to support the  Company's  corporate  collaborations  and its  internal
programs,  partially offset by higher research support expenses  associated with
the Company's antiviral discovery program with Iconix.  Research and development
expenses are not expected to materially change in the second quarter.

General and Administrative Expenses. General and administrative expenses for the
first  quarter were  approximately  equal at $1.0 million in both 1999 and 1998.
General and administrative expenses are not expected to materially change in the
second quarter.

Interest  Income,  net.  Interest  income for the first quarter  decreased  from
$526,000  in 1998 to $409,000  in 1999,  primarily  due to a decrease in average
cash balances.  Interest expense for the first quarter increased from $18,000 in
1998 to $71,000 in 1999 primarily due to a new equipment  financing  arrangement
entered into at the end of 1998.

Liquidity and Capital Resources

         The Company has  financed  its  operations  since  inception  primarily
through  the  sale  of  equity,   through  funds  provided  under  collaborative
agreements,  through other revenues principally consisting of


                                      -8-
<PAGE>

sales of molecular  diversity  samples and through  equipment  financing.  As of
March 31, 1999 the  Company  had  received  approximately  $64.6  million in net
proceeds  from the sale of equity and  approximately  $42.3 million from license
fees and milestone  payments,  and research support payments under collaborative
agreements.

         Cash,  cash  equivalents  and short-term  investments at March 31, 1999
were $29.1 million  compared to $33.2 million at December 31, 1998. The decrease
during  the  first  three  months  of 1999  was due  primarily  to cash  used by
operations  of $3.6  million,  $232,000  in capital  expenditures  and  $215,000
utilized in  financing  activities  which  predominantly  consisted of principal
payments on the Company's new equipment financing arrangement.

         The Company  believes  that its existing  capital  resources,  interest
income and future  payments due under  collaborative  agreements will enable the
Company to maintain current and planned operations at least through 2000.

Impact of Year 2000

         The "Year 2000" issue  generally  describes the various  problems which
may  result  from  the   improper   processing   of  dates  and   date-sensitive
calculations.   Computers  and  other  equipment   containing   computer-related
components (such as programmable  logic  controllers and other embedded systems)
using two digits to identify  the year in a date may not be able to  distinguish
between  dates in the 20th  century  versus the 21st  century.  This issue could
cause  system or  equipment  malfunctions  resulting  in  material  and  adverse
interruptions in operations.

         The Company has begun to assess the  potential  impact of the Year 2000
computer problem on its computer systems, research equipment with embedded chips
or software,  and on the ability of third parties to supply  critical  materials
and services.  The Company has completed the assessment of its computer  systems
and believes them to be Year 2000 compliant. The Company expects to complete the
assessment  of its  embedded  systems and certain  third party  suppliers by the
third quarter of 1999,  and to take necessary  remediation  action by the end of
1999.  Expenditures to date have not been material and have consisted  solely of
the time of certain company personnel. Based on the partial assessment completed
through March 31, 1999,  the Company does not currently  expect the future costs
of completing the assessment and making equipment  modifications to be material.
Although the Company  believes its key financial,  information  and  operational
systems are Year 2000  compliant,  there can be no assurances that other defects
will not be discovered in the future.  The Company is unable to control  whether
the firms and vendors it does business with currently,  and in the future,  will
have systems which are Year 2000 compliant.  The Company's  operations  could be
affected  to the  extent  that  firms and  vendors  would be  unable to  provide
services or ship  products.  Management  does not believe the Year 2000  changes
will have a material impact on its business,  financial  condition or results of
operations.  Because of this,  the  Company  does not have a formal  contingency
plan,  however, if deemed appropriate in the future, the Company would implement
one.


                                      -9-
<PAGE>


PART II      OTHER INFORMATION

Item 1.      Legal Proceedings

             None.

Item 2.      Changes in Securities

             None.

Item 3.      Defaults in Senior Securities

             None.

Item 4.      Submission of Matters to a Vote of Security Holders

             None.

Item 5.      Other Information

             None.

Item 6.      Exhibits and Reports on Form 8-K

     (a) The following exhibits have been filed with this report:

             27.1    Financial Data Schedule

     (b)     Reports on Form 8-K.

             No reports on Form 8-K were filed  during the  quarter  ended March
             31, 1999.


                                      -10-
<PAGE>


                                   SIGNATURES


         Pursuant to the  requirements  of the Securities  Exchange Act of 1934,
the  registrant  has duly  caused  this report to be signed on its behalf by the
undersigned, thereunto duly authorized.


Dated:   May 14, 1999




                              MICROCIDE PHARMACEUTICALS, INC.
                              --------------------------------------------------
                              (Registrant)



                                /s/  James E. Rurka
                              --------------------------------------------------
                              President, Chief Executive Officer and Director
                              (principal executive officer)




                                /s/  Matthew J. Hogan
                              --------------------------------------------------
                              Chief Financial Officer
                              (principal financial and accounting officer)



                                      -11-

<TABLE> <S> <C>

<ARTICLE>                     5
<CIK>                         0001010915
<NAME>                        MICROCIDE PHARMACEUTICALS, INC.
<MULTIPLIER>                                   1,000
<CURRENCY>                                     U.S. DOLLARS
       
<S>                           <C>
<PERIOD-TYPE>                 3-MOS
<FISCAL-YEAR-END>                              DEC-31-1999
<PERIOD-START>                                 JAN-01-1999
<PERIOD-END>                                   MAR-31-1999
<EXCHANGE-RATE>                                1
<CASH>                                          4,877
<SECURITIES>                                   24,272
<RECEIVABLES>                                   1,287
<ALLOWANCES>                                        0
<INVENTORY>                                         0
<CURRENT-ASSETS>                               31,259
<PP&E>                                         19,578
<DEPRECIATION>                                (10,285)
<TOTAL-ASSETS>                                 41,251
<CURRENT-LIABILITIES>                           3,345
<BONDS>                                             0
                               0
                                         0
<COMMON>                                       66,903
<OTHER-SE>                                    (31,561)
<TOTAL-LIABILITY-AND-EQUITY>                   41,521
<SALES>                                           299
<TOTAL-REVENUES>                                2,692
<CGS>                                               0
<TOTAL-COSTS>                                   5,753
<OTHER-EXPENSES>                                    0
<LOSS-PROVISION>                                    0
<INTEREST-EXPENSE>                                 71
<INCOME-PRETAX>                                (2,723)
<INCOME-TAX>                                        0
<INCOME-CONTINUING>                            (2,723)
<DISCONTINUED>                                      0
<EXTRAORDINARY>                                     0
<CHANGES>                                           0
<NET-INCOME>                                   (2,723)
<EPS-PRIMARY>                                   (0.25)
<EPS-DILUTED>                                   (0.25)
        

</TABLE>


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