ATLAS VENTURE FUND II L P
SC 13G/A, 2000-02-14
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                                  UNITED STATES
                       SECURITIES AND EXCHANGE COMMISSION
                             WASHINGTON, D.C. 20549


                                  SCHEDULE 13G

                    UNDER THE SECURITIES EXCHANGE ACT OF 1934
                               (AMENDMENT NO. 2 )*


                                    ILOG S.A.
             -------------------------------------------------------
                                (Name of Issuer)

                          AMERICAN DEPOSITARY RECEIPTS
             -------------------------------------------------------
                         (Title of Class of Securities)

                                   0004523601
             -------------------------------------------------------
                                 (CUSIP Number)


             -------------------------------------------------------
             (Date of Event Which Requires Filing of this Statement)

         Check the appropriate box to designate the rule pursuant to which this
Schedule is filed:

         [ ]  Rule 13d-1(b)
         [ ]  Rule 13d-1(c)
         [X]  Rule 13d-1(d)

*The remainder of this cover page shall be filled out for a reporting person's
initial filing on this form with respect to the subject class of securities, and
for any subsequent amendment containing information which would alter the
disclosures provided in a prior cover page.

The information required in the remainder of this cover page shall not be deemed
to be "filed" for the purpose of Section 18 of the Securities Exchange Act of
1934 ("Act") or otherwise subject to the liabilities of that section of the Act
but shall be subject to all other provisions of the Act (however, see the
Notes).


<PAGE>   2


                                  SCHEDULE 13G

CUSIP NO.  0004523601                                 PAGE   2   OF   13   PAGES
           ----------                                       --        --

- --------------------------------------------------------------------------------
  (1)   NAME OF REPORTING PERSON
        S.S. or I.R.S. IDENTIFICATION NO. OF ABOVE PERSON

        Atlas Venture Fund II, L.P.
- --------------------------------------------------------------------------------
  (2)   CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP*
                                                                      (A)  [ ]
                                                                      (B)  [ ]
- --------------------------------------------------------------------------------
  (3)   SEC USE ONLY

- --------------------------------------------------------------------------------
  (4)   CITIZENSHIP OR PLACE OF ORGANIZATION

        Delaware Limited Partnership
- --------------------------------------------------------------------------------
                                 (5)   SOLE VOTING POWER

          NUMBER OF                    0 shares
           SHARES               ------------------------------------------------
        BENEFICIALLY             (6)   SHARED VOTING POWER
          OWNED BY
            EACH                       979,381 shares
          REPORTING             ------------------------------------------------
         PERSON WITH             (7)   SOLE DISPOSITIVE POWER

                                       0 shares
                                ------------------------------------------------
                                 (8)   SHARED DISPOSITIVE POWER

                                       979,381 shares

- --------------------------------------------------------------------------------
  (9)   AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON

        979,381 shares
- --------------------------------------------------------------------------------
 (10)   CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES
        CERTAIN SHARES*                                                    [ ]

- --------------------------------------------------------------------------------
 (11)   PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW 9

        6.9%
- --------------------------------------------------------------------------------
 (12)   TYPE OF REPORTING PERSON*

        PN
- --------------------------------------------------------------------------------


                               Page 2 of 13 Pages

<PAGE>   3

                                  SCHEDULE 13G

CUSIP NO.  0004523601                                 PAGE   3   OF   13   PAGES
           ----------                                       --        --



- --------------------------------------------------------------------------------
  (1)   NAME OF REPORTING PERSON
        S.S. or I.R.S. IDENTIFICATION NO. OF ABOVE PERSON

        Atlas Venture Associates II, L.P.
- --------------------------------------------------------------------------------
  (2)   CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP*
                                                                      (A)  [ ]
                                                                      (B)  [ ]
- --------------------------------------------------------------------------------
  (3)   SEC USE ONLY

- --------------------------------------------------------------------------------
  (4)   CITIZENSHIP OR PLACE OF ORGANIZATION

        Delaware Limited Partnership
- --------------------------------------------------------------------------------
                                 (5)   SOLE VOTING POWER

          NUMBER OF                    0 shares
           SHARES               ------------------------------------------------
        BENEFICIALLY             (6)   SHARED VOTING POWER
          OWNED BY
            EACH                       979,381 shares
          REPORTING             ------------------------------------------------
         PERSON WITH             (7)   SOLE DISPOSITIVE POWER

                                       0 shares
                                ------------------------------------------------
                                 (8)   SHARED DISPOSITIVE POWER

                                       979,381 shares
- --------------------------------------------------------------------------------
  (9)   AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON

        979,381 shares
- --------------------------------------------------------------------------------
 (10)   CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES
        CERTAIN SHARES*                                                    [ ]

- --------------------------------------------------------------------------------
 (11)   PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW 9

        6.9%
- --------------------------------------------------------------------------------
 (12)   TYPE OF REPORTING PERSON*

        PN
- --------------------------------------------------------------------------------


                               Page 3 of 13 Pages

<PAGE>   4


                                  SCHEDULE 13G

CUSIP NO.  0004523601                                 PAGE   4   OF   13   PAGES
           ----------                                       --        --

- --------------------------------------------------------------------------------
  (1)   NAME OF REPORTING PERSON
        S.S. or I.R.S. IDENTIFICATION NO. OF ABOVE PERSON

        Atlas Venture Europe Fund B.V.
- --------------------------------------------------------------------------------
  (2)   CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP*
                                                                      (A)  [ ]
                                                                      (B)  [ ]
- --------------------------------------------------------------------------------
  (3)   SEC USE ONLY

- --------------------------------------------------------------------------------
  (4)   CITIZENSHIP OR PLACE OF ORGANIZATION

        The Netherlands
- --------------------------------------------------------------------------------
                                 (5)   SOLE VOTING POWER

          NUMBER OF                    0 shares
           SHARES               ------------------------------------------------
        BENEFICIALLY             (6)   SHARED VOTING POWER
          OWNED BY
            EACH                       979,381 shares
          REPORTING             ------------------------------------------------
         PERSON WITH             (7)   SOLE DISPOSITIVE POWER

                                       0 shares
                                ------------------------------------------------
                                 (8)   SHARED DISPOSITIVE POWER

                                       979,381 shares
- --------------------------------------------------------------------------------
  (9)   AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON

        979,381 shares
- --------------------------------------------------------------------------------
 (10)   CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES
        CERTAIN SHARES*                                                    [ ]

- --------------------------------------------------------------------------------
 (11)   PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW 9

        6.9%
- --------------------------------------------------------------------------------
 (12)   TYPE OF REPORTING PERSON*

        CO
- --------------------------------------------------------------------------------



                               Page 4 of 13 Pages


<PAGE>   5

                                  SCHEDULE 13G

CUSIP NO.  0004523601                                 PAGE   5   OF   13   PAGES
           ----------                                       --        --


- --------------------------------------------------------------------------------
  (1)   NAME OF REPORTING PERSON
        S.S. or I.R.S. IDENTIFICATION NO. OF ABOVE PERSON

        Atlas InvesteringsGroep N.V.
- --------------------------------------------------------------------------------
  (2)   CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP*
                                                                      (A)  [ ]
                                                                      (B)  [ ]
- --------------------------------------------------------------------------------
  (3)   SEC USE ONLY

- --------------------------------------------------------------------------------
  (4)   CITIZENSHIP OR PLACE OF ORGANIZATION

        The Netherlands
- --------------------------------------------------------------------------------
                                 (5)   SOLE VOTING POWER

          NUMBER OF                    0 shares
           SHARES               ------------------------------------------------
        BENEFICIALLY             (6)   SHARED VOTING POWER
          OWNED BY
            EACH                       979,381 shares
          REPORTING             ------------------------------------------------
         PERSON WITH             (7)   SOLE DISPOSITIVE POWER

                                       0 shares
                                ------------------------------------------------
                                 (8)   SHARED DISPOSITIVE POWER

                                       979,381 shares
- --------------------------------------------------------------------------------
  (9)   AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON

        979,381 shares
- --------------------------------------------------------------------------------
 (10)   CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES
        CERTAIN SHARES*

- --------------------------------------------------------------------------------
 (11)   PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW 9

        6.9%
- --------------------------------------------------------------------------------
 (12)   TYPE OF REPORTING PERSON*

        CO
- --------------------------------------------------------------------------------


                               Page 5 of 13 Pages


<PAGE>   6

                                  SCHEDULE 13G

Item 1(a).        NAME OF ISSUER:  ILOG S.A.

Item 1(b).        ADDRESS OF ISSUER'S PRINCIPAL EXECUTIVE OFFICES:
                  9, rue de Verdun, 94253 Gentilly, France.

Item 2(a).        NAMES OF PERSONS FILING: Atlas Venture Fund II, L.P., Atlas
                  Venture Associates II, L.P., Atlas Venture Europe Fund B.V.
                  and Atlas InvesteringsGroep N.V.

                  Atlas Venture Associates II, L.P. is the sole general partner
                  of Atlas Venture Fund II, L.P. Atlas InvesteringsGroep N.V. is
                  the sole shareholder of Atlas Venture Europe Fund B.V.

Item 2(b).        ADDRESS OF PRINCIPAL BUSINESS OFFICE OR, IF NONE, RESIDENCE:
                  The address of the principal business office of Atlas Venture
                  Fund II, L.P. and Atlas Venture Associates II, L.P. is Atlas
                  Venture, 222 Berkeley Street, Boston, Massachusetts 02116. The
                  address of the principal business office of Atlas Venture
                  Europe Fund B.V. and Atlas InvesteringsGroep N.V. is Atlas
                  InvesteringsGroep N.V., Naarderpoort 1, 1411 MA Naarden, The
                  Netherlands.

Item 2(c).        CITIZENSHIP: Atlas Venture Fund II, L.P. and Atlas Venture
                  Associates II, L.P. are each a limited partnership organized
                  under the laws of the State of Delaware. Atlas Venture Europe
                  Fund B.V. and Atlas InvesteringsGroep N.V. are each a
                  corporation organized under the laws of The Netherlands.

Item 2(d).        TITLE OF CLASS OF SECURITIES:  American Depositary Receipts

Item 2(e).        CUSIP NUMBER:  0004523601

Item 3.           IF THIS STATEMENT IS FILED PURSUANT TO RULES 13d-1(b), OR
                  13d-2(b) OR (c), CHECK WHETHER THE PERSON FILING IS A:

                  Not Applicable.

Item 4.           OWNERSHIP.

                  (a)      Amount Beneficially Owned:

                  Each of Atlas Venture Fund II, L.P., Atlas Venture Associates
                  II, L.P., Atlas Venture Europe Fund B.V. and Atlas
                  InvesteringsGroep N.V. (individually an "Entity" and
                  collectively the "Entities") may be deemed to own beneficially
                  979,381 shares of Common Stock as of December 31, 1999 (the
                  "Beneficial Shares").

                  As of December 31, 1999, Atlas Venture Fund II, L.P. is the
                  record owner of 316,700 shares of Common Stock and Atlas
                  Venture Europe Fund B.V. is the record owner of 449,154 shares
                  of Common Stock. In addition, an affiliate of



                               Page 6 of 13 Pages


<PAGE>   7


                  the Entities shares dispositive and voting control with
                  certain third parties as to 213,357 shares held by Parquest
                  Venture Partnership. By virtue of the affiliate relationships
                  among the Entities, each Entity may be deemed to own
                  beneficially all of the Beneficial Shares. Hence, each Entity
                  may be deemed to own beneficially 979,381 shares of Common
                  Stock.

         (b)      Percent of Class:

                  Atlas Venture Fund II, L.P.                    6.9%
                  Atlas Venture Associates II, L.P.              6.9%
                  Atlas Venture Europe Fund B.V.                 6.9%
                  Atlas InvesteringsGroep N.V.                   6.9%

         The foregoing percentages are calculated based on the 14,096,500 shares
         of Common Stock reported to be outstanding in an Annual Report on Form
         20-F for ILOG S.A. for the year ended June 30, 1999.

         (c) Number of shares as to which such person has:

                  (i)      sole power to vote or to direct the vote:

                           0 shares for each reporting person

                 (ii)      shared power to vote or to direct the vote:

                           Atlas Venture Fund II, L.P.            979,381 shares
                           Atlas Venture Associates II, L.P.      979,381 shares
                           Atlas Venture Europe Fund B.V.         979,381 shares
                           Atlas InvesteringsGroep N.V.           979,381 shares

                (iii)      sole power to dispose or to direct the disposition
                           of:

                           0 shares for each reporting person

                 (iv)      shared power to dispose or to direct the disposition
                           of:

                           Atlas Venture Fund II, L.P.            979,381 shares
                           Atlas Venture Associates II, L.P.      979,381 shares
                           Atlas Venture Europe Fund B.V.         979,381 shares
                           Atlas InvesteringsGroep N.V.           979,381 shares

         Each of the reporting persons expressly disclaims beneficial ownership
         of any shares of Common Stock of ILOG S.A., except in the case of (i)
         Atlas Venture Fund II, L.P. for the 316,700 shares which it holds of
         record and (ii) Atlas Venture Europe Fund B.V. for the 449,154 shares
         which it holds of record.

Item 5.           OWNERSHIP OF FIVE PERCENT OR LESS OF A CLASS.

                  Not Applicable.



                               Page 7 of 13 Pages


<PAGE>   8


Item 6.           OWNERSHIP OF MORE THAN FIVE PERCENT ON BEHALF OF ANOTHER
                  PERSON.

                  Not Applicable.

Item 7.           IDENTIFICATION AND CLASSIFICATION OF THE SUBSIDIARY WHICH
                  ACQUIRED THE SECURITY BEING REPORTED ON BY THE PARENT HOLDING
                  COMPANY.

                  Not Applicable.

Item 8.           IDENTIFICATION AND CLASSIFICATION OF MEMBERS OF THE GROUP.

                  Not Applicable. The reporting persons expressly disclaim
                  membership in a "group" as defined in Rule 13d-1(b)(1)(ii)(J).

Item 9.           NOTICE OF DISSOLUTION OF GROUP.

                  Not Applicable.

Item 10.          CERTIFICATIONS.

                  Not Applicable. This statement on Schedule 13G is not filed
                  pursuant to Rule 13d-1(b) or Rule 13d-1(c).


                               Page 8 of 13 Pages


<PAGE>   9


                                   SIGNATURES

         After reasonable inquiry and to the best of our knowledge and belief,
we certify that the information set forth in this statement is true, complete
and correct. We also hereby agree to file this statement jointly pursuant to the
Agreement listed on EXHIBIT 1 hereto.

Dated:  February 10, 2000

ATLAS VENTURE FUND II, L.P.              ATLAS INVESTERINGSGROEP N.V.

By: Atlas Venture Associates II, L.P.
                                         By:                  *
                                            ------------------------------------
                                             Hans Bosman,
                                             Managing Director
By:               *
   -------------------------------
    Christopher J. Spray,
    General Partner                      ATLAS VENTURE EUROPE FUND B.V.

ATLAS VENTURE ASSOCIATES II, L.P.        By: Atlas InvesteringsGroep N.V.


By:               *                      By:                  *
   -------------------------------          ------------------------------------
    Christopher J. Spray,                    Hans Bosman,
    General Partner                          Managing Director




*   The undersigned attorney-in-fact, by signing her name below, does hereby
    sign this statement on behalf of the above indicated filers pursuant to
    Powers of Attorney filed hereto as EXHIBIT 2.


    /s/ Jeanne Larkin Henry
    -------------------------------------
    Jeanne Larkin Henry
    Attorney-in-fact



                               Page 9 of 13 Pages

<PAGE>   10


                                                                       EXHIBIT 1
                                    AGREEMENT

         Pursuant to Rule 13d-1(k)(1) under the Securities Exchange Act of 1934,
the undersigned hereby agree that only one statement containing the information
required by Schedule 13G need be filed with respect to the ownership by each of
the undersigned of shares of Common Stock of ILOG S.A.

         This agreement may be executed in any number of counterparts, each of
which shall be deemed an original.

         EXECUTED this 10th day of February, 2000.

ATLAS VENTURE FUND II, L.P.              ATLAS INVESTERINGSGROEP N.V.

By: Atlas Venture Associates II, L.P.
                                         By:                  *
                                            ------------------------------------
                                             Hans Bosman,
                                             Managing Director
By:               *
   -------------------------------
    Christopher J. Spray,
    General Partner                      ATLAS VENTURE EUROPE FUND B.V.

ATLAS VENTURE ASSOCIATES II, L.P.        By: Atlas InvesteringsGroep N.V.


By:               *                      By:                  *
   -------------------------------          ------------------------------------
    Christopher J. Spray,                    Hans Bosman,
    General Partner                          Managing Director



*   The undersigned attorney-in-fact, by signing her name below, does hereby
    sign this statement on behalf of the above indicated filers pursuant to
    Powers of Attorney filed hereto as EXHIBIT 2.


    /s/ Jeanne Larkin Henry
    --------------------------------
    Jeanne Larkin Henry
    Attorney-in-fact


                               Page 10 of 13 Pages

<PAGE>   11


                                                                       EXHIBIT 2

                                POWER OF ATTORNEY


         KNOW ALL MEN BY THESE PRESENTS, that each person whose signature
appears below hereby constitutes and appoints each and any of Christopher J.
Spray and Jeanne Larkin Henry his true and lawful attorney-in-fact and agent,
with full power of substitution and resubstitution, for him and in his name,
place and stead, in any and all capacities (until revoked in writing) to sign
any and all instruments, certificates and documents required to be executed on
behalf of himself individually or on behalf of each or any of Atlas Venture
Fund, L.P., Atlas Venture Associates, L.P., Atlas Venture Partners III, B.V.,
Atlas Venture Fund II, L.P., Atlas Venture Associates II, L.P., Atlas Venture
Europe Fund B.V., Atlas InvesteringsGroep N.V., and Atlas Venture Beheer II B.V.
pursuant to sections 13 and 16 of the Securities Exchange Act of 1934, as
amended (the "Exchange Act"), and any and all regulations promulgated
thereunder, and to file the same, with all exhibits thereto, and any other
documents in connection therewith, with the Securities and Exchange Commission,
and with any other entity when and if such is mandated by the Exchange Act or by
the By-laws of the National Association of Securities Dealers, granting unto
said attorney-in-fact and agent full power and authority to do and perform each
and every act and thing requisite and necessary fully to all intents and
purposes as he might or could do in person thereby ratifying and confirming all
that said attorney-in-fact and agent, or his substitute or substitutes, may
lawfully do or cause to be done by virtue hereof.





                  [REMAINDER OF PAGE LEFT BLANK INTENTIONALLY]

                      [SIGNATURE PAGE FOLLOWS IMMEDIATELY]


                               Page 11 of 13 Pages

<PAGE>   12



      IN WITNESS WHEREOF, this Power of Attorney has been signed as of the 31st
day of January, 1997.



                                            /s/ Christopher J. Spray
                                            ------------------------------------
                                            Christopher J. Spray


Commonwealth of Massachusetts)
                             ) ss:
County of Suffolk            )

      On this 31st day of January, 1997, before me personally came Christopher
J. Spray, known to me to be the person described and who executed the foregoing
instrument that he acknowledged that he executed the same.


[Notary Seal]                               /s/ Elizabeth  A. LeBlanc
                                            ------------------------------------
                                            Notary Public

                                            My commission expires:  July 3, 1998





                               Page 12 of 13 Pages

<PAGE>   13


      IN WITNESS WHEREOF, this Power of Attorney has been signed as of the 7th
day of February, 2000.



                                            /s/ Hans Bosman
                                            ------------------------------------
                                            Hans Bosman


Commonwealth of Massachusetts)
                             ) ss:
County of Suffolk            )

      On this 7th day of February, 2000, before me personally came Hans Bosman,
known to me to be the person described and who executed the foregoing instrument
that he acknowledged that he executed the same.


[Notary Seal]                           /s/ Ann M. Grummitt
                                        ------------------------------------
                                        Notary Public

                                        My commission expires:  November 6, 2003













                              Page 13 of 13 Pages



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