GENENCOR INTERNATIONAL INC
S-1/A, EX-3.1, 2000-06-26
COMMERCIAL PHYSICAL & BIOLOGICAL RESEARCH
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<PAGE>   1


                                                                     EXHIBIT 3.1

                               STATE OF DELAWARE
                        OFFICE OF THE SECRETARY OF STATE                  PAGE 1
                        --------------------------------




        I, EDWARD J. FREEL, SECRETARY OF STATE OF THE STATE OF DELAWARE, DO
HEREBY CERTIFY THE ATTACHED IS A TRUE AND CORRECT COPY OF THE CERTIFICATE OF
INCORPORATION OF "ALLENS CREEK ENTERPRISES INC.", FILED IN THIS OFFICE ON THE
TWENTY-SIXTH DAY OF SEPTEMBER, A.D. 1989, AT 4:15 O'CLOCK P.M.





















                                          /s/ Edward J. Freel
                                             -----------------------------------
                                             Edward J. Freel, Secretary of State
2208849   8100                               AUTHENTICATION:   0159190

991552724                                              DATE:   12-22-99


<PAGE>   2


                          Certificate of Incorporation

                                       of

                          Allens Creek Enterprises Inc.


               1. The name of the corporation is Allens Creek Enterprises Inc.

               2. The address of the corporation's registered office in the
                  State of Delaware is 1209 Orange Street in the City of
                  Wilmington, County of New Castle. The name of its registered
                  agent at such address is The Corporation Trust Company.

               3. The purpose of the corporation is to engage in any lawful act
                  or activity for which corporations may be organized under the
                  General Corporation Law of Delaware.

               4. The corporation shall have authority to issue one million
                  shares, consisting of five hundred thousand shares of Common
                  Stock having a par value of $.01 per share and five hundred
                  thousand shares of Preferred Stock having a par value of $.01
                  per share.

                  The Board of Directors is authorized, subject to limitations
                  prescribed by law, to provide for the issuance of the shares
                  of Preferred Stock in series and, by filing a certificate
                  pursuant to the applicable law of the State of Delaware, to
                  establish from time to time the number of shares to be
                  included in each such series, and to fix the designation,
                  powers, preferences, and rights of the shares of each such
                  series and any qualifications, limitations, or restrictions
                  thereof. The number of authorized shares of Preferred Stock
                  may be increased or decreased, but not below the number of
                  shares thereof then outstanding, by the affirmative vote of
                  the holders of a majority of the outstanding shares of Common
                  Stock, without a vote of the holders of the Preferred Stock,
                  or of any series thereof, unless a vote of any such holders is
                  required pursuant to the certificate or certificates
                  establishing any series of Preferred Stock.


<PAGE>   3


               5. The Board of Directors of the corporation is expressly
                  authorized to adopt, amend, or repeal by-laws of the
                  corporation.

               6. Elections of directors need not be by written ballot except
                  and to the extent provided in the by-laws of the corporation.

               7. No director of the corporation shall be liable to the
                  corporation or its stockholders for monetary damages for
                  breach of fiduciary duty as a director, provided that the
                  foregoing shall not eliminate or limit liability of a director
                  (i) for any breach of such director's duty of loyalty to the
                  corporation or its stockholders, (ii) for acts or omissions
                  not in good faith or which involve a intentional misconduct or
                  a knowing violation of law, (iii) under Section 174 of Title 8
                  of the Delaware Code, or (iv) for any transaction from which
                  such director derived an improper personal benefit.

               8. The incorporator is Gary Van Graafeiland, whose mailing
                  address is 343 State Street, Rochester, New York 14650-0208.

               I, the undersigned, being the incorporator, for the purpose of
forming a corporation under the laws of the State of Delaware do make, file, and
record this Certificate of Incorporation, do certify that the facts herein
stated are true, and, accordingly have hereto set my hand this 26th day of
September, 1989.



                                            By: /s/
                                               ---------------------------------
                                                Gary Van Graafeiland


<PAGE>   4


                                STATE OF DELAWARE
                        OFFICE OF THE SECRETARY OF STATE                  PAGE 1
                        --------------------------------




        I, EDWARD J. FREEL, SECRETARY OF STATE OF THE STATE OF DELAWARE, DO
HEREBY CERTIFY THE ATTACHED IS A TRUE AND CORRECT COPY OF THE CERTIFICATE OF
AMENDMENT OF "ALLENS CREEK ENTERPRISES INC.", CHANGING ITS NAME FROM "ALLENS
CREEK ENTERPRISES INC." TO "GENENCOR INTERNATIONAL, INC.", FILED IN THIS OFFICE
ON THE SECOND DAY OF APRIL, A.D. 1990, AT 3 O'CLOCK P.M.




















                                          /s/ Edward J. Freel
                                             -----------------------------------
                                             Edward J. Freel, Secretary of State

2208849   8100                               AUTHENTICATION:   7891814

960091573                                              DATE:   04-02-96


<PAGE>   5


                            CERTIFICATE OF AMENDMENT
                                       OF
                          CERTIFICATE OF INCORPORATION
                                       OF
                          ALLENS CREEK ENTERPRISES INC.


               Duly Adopted in Accordance with Sections 242 of the
                        Delaware General Corporation Law

               Allens Creek Enterprises Inc., a corporation organized and
existing under and by virtue of the General Corporation Law of the State of
Delaware,

DOES HEREBY CERTIFY:

FIRST: That by unanimous written consent of the Board of Directors of Allens
Creek Enterprises Inc., resolutions were duly adopted setting forth a proposed
amendment of the Certificate of Incorporation of said corporation and declaring
said amendment to be advisable. The resolution setting forth the proposed
amendment is as follows:

               RESOLVED, that the Certificate of Incorporation of this
               corporation be amended by changing paragraph numbered "1." so
               that said paragraph number "1." shall be and read as follows:

               "1.  The name of the corporation is Genencor International, Inc."

SECOND: That said amendment was duly adopted in accordance with the provisions
of Section 242 of the General Corporation Law of the State of Delaware.

               IN WITNESS WHEREOF, the undersigned have executed this
Certificate of Amendment as of the 2nd day of April, 1990.


                                            /s/ Jose J. Corenas
                                               ---------------------------------
                                               Jose J. Corenas, President


ATTEST:

                                            /s/ K. J. Phelps
                                               ---------------------------------
                                               J. Phelps, Secretary


<PAGE>   6


                                STATE OF DELAWARE
                        OFFICE OF THE SECRETARY OF STATE                  PAGE 1
                        --------------------------------




               I, EDWARD J. FREEL, SECRETARY OF STATE OF THE STATE OF DELAWARE,
DO HEREBY CERTIFY THE ATTACHED IS A TRUE AND CORRECT COPY OF THE CERTIFICATE OF
AMENDMENT OF "GENENCOR INTERNATIONAL, INC.", FILED IN THIS OFFICE ON THE FIFTH
DAY OF MAY, A.D. 1992, AT 9 O'CLOCK A.M.





















                                          /s/ Edward J. Freel
                                             -----------------------------------
                                             Edward J. Freel, Secretary of State

2208849   8100                               AUTHENTICATION:   7891812

                                                       DATE:


<PAGE>   7


                            CERTIFICATE OF AMENDMENT
                                     of the
                          CERTIFICATE OF INCORPORATION
                                       of
                          GENENCOR INTERNATIONAL, INC.


               GENENCOR INTERNATIONAL, INC., a corporation organized and
existing under and by virtue of the General Corporation Law of the State of
Delaware, DOES HEREBY CERTIFY THAT:

               FIRST: That the Board of Directors of GENENCOR INTERNATIONAL,
INC. duly adopted resolutions setting forth a proposed amendment to the
Certificate of Incorporation of said Corporation, declaring said amendment to be
advisable and calling for the consent of the stockholders of said Corporation in
furtherance therefor. The resolution setting forth the proposed amendment is as
follows:


               RESOLVED, that the Certificate of Incorporation be, and it hereby
               is, amended by deleting Article 4 in its entirety and
               substituting in lieu thereof the following:

                             "4. The corporation shall have authority to issue
                      one million one thousand shares, consisting of (i) five
                      hundred thousand shares of Common Stock having a par value
                      of $.01 per share, (ii) five hundred thousand shares of
                      Preferred Stock having a par value of $.01 per share and
                      (iii) one thousand shares of Series A Preferred Stock
                      without par value.

                                    (a) Voting Rights. Each share of issued and
                      outstanding Common Stock shall be entitled to one vote.
                      Each share of Series A Preferred Stock shall have no
                      voting rights except: (i) as required by law, and (ii)
                      with respect to any matter being submitted to a vote of
                      stockholders which would (A) increase or decrease the par
                      value or number of authorized shares of Series A Preferred
                      Stock or (B) change any preferences, powers or rights of
                      Series A Preferred Stock so as to affect them adversely,
                      (iii) to issue prior ranking preferred stock and (iv) to
                      redeem any stock with respect to which the Series A
                      Preferred Stock has a preference.

                                    (b) Dividend Rights. The holders of the
                      Series A Preferred Stock shall be entitled to receive,
                      when


<PAGE>   8


                      and as declared by the Board of Directors out of funds
                      legally available therefor, annual cumulative cash
                      dividends of $7,500 per share, payable quarterly.

                             The Series A Preferred Stock shall not be entitled
                      to participate in the profits of the corporation whether
                      by stock dividends or otherwise beyond the rights set
                      forth above nor shall the holders thereof have any
                      preemptive or preferential right to purchase or subscribe
                      to any other issue or stock now or hereafter authorized or
                      any notes, debentures, bonds or other securities
                      convertible into or carrying options or warrants to
                      purchase shares of any issue now or hereafter authorized.

                                    (c) Liquidation Rights. In the event of any
                      voluntary or involuntary liquidation, dissolution or
                      winding up of the affairs of the corporation, the holders
                      of the Series A Preferred Stock shall be entitled to
                      receive on a pro rata basis, out of the net assets of the
                      corporation, before any of the assets be distributed among
                      or paid to the holders of the Common Stock or the
                      Preferred Stock, par value $.01, the sum of $100,000 per
                      share plus accrued but unpaid dividends.

                             After the making of such payments to the holders of
                      the Series A Preferred Stock, the remaining assets of the
                      corporation, if any, shall be distributed among the
                      holders of Common Stock and of Preferred Stock, par value
                      $.01, in accordance with their relative rights.

                                    (d) Redemption. All or any number of the
                      shares of Series A Preferred Stock may be redeemed, at the
                      option of the corporation, at a price of $100,000.00 per
                      share plus accrued but unpaid dividends to the date of
                      redemption. The Board of Directors shall set the number of
                      shares to be redeemed and the redemption date. No stock
                      shall be redeemed under circumstances which would cause
                      the corporation to be in violation of the provisions of
                      the General Corporation Law of the Sate of Delaware.

                             Notice of election to redeem shall be mailed to
                      each holder of record of such stock at its address as it
                      appears on the books of the corporation not fewer than 30
                      days prior to the date upon which the redemption is to
                      take place. In the event that fewer than all of the
                      outstanding Series A Preferred Stock is to be redeemed,
                      the shares shall be redeemed on a pro rata basis among the
                      then existing shareholders of Series A Preferred Stock.


<PAGE>   9


                                    (e) Preferred Stock, par value $.01. The
                      Board of Directors is authorized, subject to limitations
                      prescribed by law, to provide for the issuance of the
                      shares of Preferred Stock, par value $.01, in series and,
                      by filing a certificate pursuant to the applicable law of
                      the State of Delaware, to establish from time to time the
                      number of shares to be included in each such series, and
                      to fix the designation, powers, preferences, and rights of
                      the shares of each such series and any qualifications,
                      limitations, or restrictions thereof. The number of
                      authorized shares of Preferred Stock, par value $.01, may
                      be increased or decreased, but not below the number of
                      shares thereof then outstanding, by the affirmative vote
                      of the holders of a majority of the outstanding shares of
                      Common Stock, without a vote of the holders of the Series
                      A Preferred Stock or the Preferred Stock, par value $.01,
                      or of any series thereof, unless a vote of any such
                      holders is required pursuant to the certificates or
                      certificates establishing any series of Preferred Stock,
                      par value $.01."

               SECOND: That thereafter, pursuant to resolution of its Board of
Directors, written consent, pursuant to statute, in favor of such action was
given by stockholders having not less than the minimum number of votes necessary
to authorize such action and that written notice was given to those stockholders
who did not consent in writing, all as prescribed by Section 228 of the General
Corporation Law of the State of Delaware.

               THIRD: That said amendment was duly adopted in accordance with
the provisions of Section 242 of the General Corporation Law of the State of
Delaware.

               FOURTH: That the capital of said Corporation shall not be reduced
under or by reason of said amendment.

               IN WITNESS WHEREOF, said GENENCOR INTERNATIONAL, INC. has caused
its corporate seal to be affixed hereto and this Certificate to be signed by W.
Thomas Mitchell, its President, and Stuart L. Melton, its Secretary, this 17th
day of April, 1992.


                                            By:       /s/ W. Thomas Mitchell
                                               ---------------------------------
                                                      W. Thomas Mitchell,
                                                      President

                                            Attest:   /s/ Stuart L. Melton
                                               ---------------------------------
                                                      Stuart L. Melton,
                                                      Secretary


<PAGE>   10


                            CERTIFICATE OF AMENDMENT

                                     OF THE

                          CERTIFICATE OF INCORPORATION

                                       OF

                          GENENCOR INTERNATIONAL, INC.

           DULY ADOPTED IN ACCORDANCE WITH SECTIONS 242 AND 222 OF THE
                            DELAWARE CORPORATION LAW


<PAGE>   11


                                STATE OF DELAWARE
                        OFFICE OF THE SECRETARY OF STATE                  PAGE 1
                        --------------------------------




               I, EDWARD J. FREEL, SECRETARY OF STATE OF THE STATE OF DELAWARE,
DO HEREBY CERTIFY THE ATTACHED IS A TRUE AND CORRECT COPY OF THE CERTIFICATE OF
AMENDMENT OF "GENENCOR INTERNATIONAL, INC.", FILED IN THIS OFFICE ON THE SEVENTH
DAY OF FEBRUARY, A.D. 2000, AT 1 O'CLOCK P.M.

               A FILED COPY OF THIS CERTIFICATE HAS BEEN FORWARDED TO THE NEW
CASTLE COUNTY RECORDER OF DEEDS.



















                                                    /s/ Edward J. Freel
                                             -----------------------------------
                                             Edward J. Freel, Secretary of State

2208849   8100                               AUTHENTICATION:   0242968

001060434                                              DATE:   02-07-00


<PAGE>   12


                            CERTIFICATE OF AMENDMENT

                                     OF THE

                          CERTIFICATE OF INCORPORATION

                                       OF

                          GENENCOR INTERNATIONAL, INC.


               Duly Adopted in Accordance with Sections 242 and 222 of the
Delaware Corporation Law.

               GENENCOR INTERNATIONAL, INC., a corporation organized and
existing under and by virtue of the General Corporation Law of the State of
Delaware, DOES HEREBY CERTIFY THAT:

               FIRST: That on December 8,1999, the Board of Directors of
Genencor International, Inc. duly adopted resolutions setting forth a proposed
amendment to the Certificate of Incorporation of said Corporation, and calling
for the consent of the stockholders of the Corporation to said Amendment, which
consent was unanimously voted by the stockholders.

               This Amended Certificate of Incorporation further amends the
provisions of the Corporation's Certificate of Incorporation as heretofore
amended or supplemented. The present name of the Corporation is Genencor
International, Inc., which was incorporated on September 26, 1989 in the State
of Delaware under the original name of Allens Creek Enterprises Inc. The
resolution setting forth the proposed amendment is as follows:

               RESOLVED, that the Certificate of Incorporation be, and it hereby
               is, amended by deleting the first paragraph of Article 4 in its
               entirety and substituting in lieu thereof the following:

                             "4. The Corporation shall have authority to issue
                      one hundred and fifty million, five hundred and one
                      thousand shares, consisting of (i) one hundred and fifty
                      million shares of Common Stock having a par value of $0.01
                      per share, (ii) five hundred thousand shares of Preferred
                      Stock having a par value of $0.01 per share and (iii) one
                      thousand shares of Series A Preferred Stock without par
                      value.

                             The remainder of Article 4 remains unmodified.


                                         By:       /s/ W. Thomas Mitchell
                                            ---------------------------------
                                                   W. Thomas Mitchell,
                                                   President and Chief Executive
                                                     Officer

                                         Attest:   /s/ Stuart L. Melton
                                                --------------------------------
                                                   Stuart L. Melton,
                                                   Secretary


<PAGE>   13


                                STATE OF DELAWARE
                        OFFICE OF THE SECRETARY OF STATE                  PAGE 1
                        --------------------------------




               I, EDWARD J. FREEL, SECRETARY OF STATE OF THE STATE OF DELAWARE,
DO HEREBY CERTIFY THE ATTACHED IS A TRUE AND CORRECT COPY OF THE CERTIFICATE OF
CORRECTION OF "GENENCOR INTERNATIONAL, INC.", FILED IN THIS OFFICE ON THE
TWENTY-FIFTH DAY OF APRIL, A.D.
2000, AT 10:30 O'CLOCK A.M.

               A FILED COPY OF THIS CERTIFICATE HAS BEEN FORWARDED TO THE NEW
CASTLE COUNTY RECORDER OF DEEDS.



















                                                   /s/ Edward J. Freel
                                             -----------------------------------
                                             Edward J. Freel, Secretary of State

2208849   8100                               AUTHENTICATION:   0400288

001208363                                              DATE:   04-25-00


<PAGE>   14


                            CERTIFICATE OF CORRECTION

                                       TO

                            CERTIFICATE OF AMENDMENT

                                     OF THE

                          CERTIFICATE OF INCORPORATION

                                       OF

                          GENENCOR INTERNATIONAL, INC.



               Genenor International, Inc., a Delaware corporation (the
"Corporation"), pursuant to Section 103(f) of the General Corporation Law of the
State of Delaware, certifies:

               FIRST: That the Certificate of Amendment of the Certificate of
Incorporation of Genencor International, Inc. (the "Certificate") filed with the
Secretary of State of the State of Delaware on February 7, 2000 is an inaccurate
record of the corporate action referred to therein.

               SECOND: That the Certificate was inaccurate in that the first
paragraph of Article 4 thereof inadvertently omitted the following provision:
"Upon the effectiveness of the amendment to the Certificate of Incorporation of
the Corporation containing this sentence, each issued and outstanding share of
Common Stock shall be subdivided and changed into twenty-five thousand (25,000)
shares of Common Stock of the corporation."

               THIRD: That the first paragraph of Article 4 of the Certificate
of Incorporation of Genencor International, Inc. in correct form is as follows:

                       4. The Corporation shall have authority to issue one
               hundred and fifty million, five hundred and one thousand shares,
               consisting of (i) one hundred and fifty million shares of Common
               Stock having a par value of $ 0.01 per share, (ii) five hundred
               thousand shares of Preferred Stock having a par value of $0.01
               per share and (iii) one thousand shares of Series A Preferred
               Stock without par value. Upon the effectiveness of the amendment
               to the Certificate of Incorporation of the Corporation containing
               this


<PAGE>   15


               sentence, each issued and outstanding share of Common Stock
               shall be subdivided and changed into twenty-five thousand
               (25,000) shares of Common Stock of the corporation.

               IN WITNESS WHEREOF, the Corporation has caused this Certificate
of Correction to be executed by Stuart L. Melton , its Secretary this 24th day
of April, 2000.

                                           GENENCOR INTERNATIONAL, INC.


                                           By:    /s/ Stuart L. Melton
                                              ----------------------------------
                                                  Name:   Stuart L. Melton
                                                  Title:  Senior V.P., Secretary


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