REPLIGEN CORP
DEF 14A, 1999-07-29
BIOLOGICAL PRODUCTS, (NO DIAGNOSTIC SUBSTANCES)
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<PAGE>
                            SCHEDULE 14A INFORMATION
                                 (RULE 14A-101)

                  Proxy Statement Pursuant to Section 14(a) of
                      the Securities Exchange Act of 1934

    Filed by the Registrant /X/
    Filed by a Party other than the Registrant / /

    Check the appropriate box:
    / /  Preliminary Proxy Statement
    / /  Confidential, for Use of the Commission Only (as permitted by Rule
         14a-6(e)(2))
    /X/  Definitive Proxy Statement
    / /  Definitive Additional Materials
    / /  Soliciting Material Pursuant to Rule 14a-11(c) or Rule 14a-12

                                      REPLIGEN CORPORATION
- --------------------------------------------------------------------------------
                (Name of Registrant as Specified In Its Charter)

- --------------------------------------------------------------------------------
    (Name of Person(s) Filing Proxy Statement, if other than the Registrant)

Payment of Filing Fee (Check the appropriate box):

/X/  No fee required.
/ /  Fee computed on table below per Exchange Act Rules 14a-6(i)(4)
     and 0-11.
     (1)     Title of each class of securities to which transaction applies:
                                     NOT APPLICABLE
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     (2)      Aggregate number of securities to which transaction applies:
                                     NOT APPLICABLE
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     (3) Per unit price or other underlying value of transaction computed
         pursuant to Exchange Act Rule 0-11 (set forth the amount on which the
         filing fee is calculated and state how it was determined):
                                     NOT APPLICABLE
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     (4)            Proposed maximum aggregate value of transaction:
                                     NOT APPLICABLE
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     (5)                             Total fee paid:
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/ /  Fee paid previously with preliminary materials.
/ /  Check box if any part of the fee is offset as provided by Exchange Act Rule
     0-11(a)(2) and identify the filing for which the offsetting fee was paid
     previously. Identify the previous filing by registration statement number,
     or the Form or Schedule and the date of its filing.
     (1)                         Amount Previously Paid:
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<PAGE>
                              REPLIGEN CORPORATION
                               117 FOURTH AVENUE
                               NEEDHAM, MA 02494
                                 (781-449-9560)

                            ------------------------

                    NOTICE OF ANNUAL MEETING OF STOCKHOLDERS

                            ------------------------

To the Stockholders:

    The Annual Meeting of Stockholders of Repligen Corporation, a Delaware
Corporation ("Repligen") will be held on Thursday, September 16, 1999, 10:00
a.m. local time, at the offices of Repligen, 117 Fourth Avenue, Needham,
Massachusetts for the following purposes:

    1.  To elect a Board of Directors for the ensuing year;

    2.  To ratify the selection of Arthur Andersen LLP as the independent
       auditors of Repligen for the fiscal year ending March 31, 2000;

    3.  To consider and act upon a proposal to amend Repligen's Restated
       Certificate of Incorporation to increase the number of authorized shares
       of Common Stock, par value $.01 per share, from 30,000,000 shares to
       40,000,000 shares; and

    4.  To transact such other business as may properly come before the Annual
       Meeting and any adjournments thereof.

    Stockholders entitled to notice of and to vote at the Annual Meeting shall
be determined as of the close of business on July 23, 1999, the record date
fixed by the Board of Directors for such purpose.

                                          By Order of the Board of Directors
                                          Daniel P. Witt, Secretary

Needham, Massachusetts
July 29, 1999

IT IS IMPORTANT THAT YOUR SHARES BE REPRESENTED AT THE MEETING. WHETHER OR NOT
YOU PLAN TO ATTEND THE MEETING IN PERSON, YOU ARE REQUESTED TO COMPLETE, SIGN,
DATE AND MAIL PROMPTLY THE ENCLOSED PROXY WHICH IS BEING SOLICITED ON BEHALF OF
THE BOARD OF DIRECTORS. A RETURN ENVELOPE WHICH REQUIRES NO POSTAGE IF MAILED IN
THE UNITED STATES IS ENCLOSED FOR THAT PURPOSE.
<PAGE>
                              REPLIGEN CORPORATION
                               117 FOURTH AVENUE
                               NEEDHAM, MA 02494

                            ------------------------

                                PROXY STATEMENT
                                 JULY 29, 1999

    Proxies in the form included with this proxy statement are solicited by the
Board of Directors (the "Board") of Repligen Corporation, a Delaware corporation
("Repligen"), for use at the Annual Meeting of Stockholders of Repligen to be
held, pursuant to the accompanying Notice of Annual Meeting, on Thursday,
September 16, 1999, 10:00 a.m. local time, or at any adjournments thereof (the
"Annual Meeting" or the "Meeting"), at Repligen's principal executive offices at
117 Fourth Avenue, Needham, Massachusetts 02494. Only stockholders of record as
of July 23, 1999 (the "Record Date") will be entitled to notice of and to vote
at the Meeting and any adjournments thereof. As of the Record Date, 21,868,085
shares of Common Stock, $.01 par value (the "Common Stock"), of Repligen were
issued and outstanding.

    Repligen's Annual Report to Stockholders, containing financial statements
for the fiscal year ended March 31, 1999, is being provided together with this
proxy statement to all stockholders entitled to vote. It is anticipated that
this proxy statement and the accompanying proxy will be first provided to
stockholders on or about August 5, 1999.

    The holders of Common Stock are entitled to one vote per share on any
proposal presented at the Annual Meeting. Stockholders may vote in person or by
proxy. Execution of a proxy will not in any way affect a stockholder's right to
attend the Annual Meeting and vote in person. Any proxy given pursuant to this
solicitation may be revoked by the person giving it any time before it is voted.
Proxies may be revoked by: (1) filing with the Secretary of Repligen, before the
taking of the vote at the Annual Meeting, a written notice of revocation bearing
a later date than the proxy; (2) duly executing a later-dated proxy relating to
the same shares and delivering it to the Secretary of Repligen before the taking
of the vote at the Annual Meeting; or (3) attending the Annual Meeting and
voting in person (although attendance at the Annual Meeting will not in and of
itself constitute a revocation of a proxy). Any written notice of revocation or
subsequent proxy should be sent so as to be delivered to Repligen Corporation,
117 Fourth Avenue, Needham, Massachusetts 02494, Attention: Secretary, at or
before the taking of the vote at the Annual Meeting.

    Each of the persons named as attorneys in the proxies is a director and/or
officer of Repligen. All properly-executed proxies returned in time to be
counted at the Annual Meeting will be voted as stated below under the heading
"Voting Procedures." Any stockholder submitting a proxy has the right to
withhold authority to vote for any individual nominee to the Board by writing
that nominee's name on the space provided on the proxy. In addition to the
election of Directors, the stockholders will consider and vote upon a proposal
to ratify the selection of auditors and will consider and vote upon a proposal
to amend Repligen's Restated Certificate of Incorporation (the "Charter") to
increase the number of authorized shares of Common Stock from 30,000,000 shares
to 40,000,000 shares, as further described in this proxy statement. Where a
choice has been specified on the proxy with respect to a matter, the shares
represented by the proxy will be voted in accordance with the specifications and
will be voted FOR if no specification is indicated.

    The Board knows of no other matters to be presented at the Annual Meeting.
If any other matter should be presented at the Annual Meeting upon which a vote
properly may be taken, shares
<PAGE>
represented by all proxies received by the Board will be voted with respect
thereto in accordance with the judgment of the persons named as attorneys in the
proxies.

                               VOTING PROCEDURES

    The representation, in person or by proxy, of at least a majority of the
outstanding shares of Common Stock entitled to vote at the Annual Meeting is
necessary to constitute a quorum for the transaction of business. Shares
represented by proxies pursuant to which votes have been withheld from any
nominee for director, or which contain one or more abstentions or broker
"non-votes," are counted as present or represented for purposes of determining
the presence or absence of a quorum for the Annual Meeting. A "non-vote" occurs
when a broker or other nominee holding shares for a beneficial owner votes on
one proposal, but does not vote on another proposal because the broker does not
have discretionary voting power and has not received instructions from the
beneficial owner.

    ELECTION OF DIRECTORS.  Directors are elected by plurality of the votes
cast, in person or by proxy, at the Annual Meeting. The five nominees who
receive the highest number of affirmative votes of the shares present or
represented and voting on the election of directors at the Annual Meeting will
be elected Directors for a one-year term. Shares present or represented and not
so marked as to withhold authority to vote for a particular nominee will be
voted in favor of a particular nominee and will be counted toward such nominee's
achievement of a plurality. Shares present at the meeting or represented by
proxy where the stockholder properly withholds authority to vote by marking the
"WITHHOLD" box on the proxy for such nominee will not be counted toward such
nominee's achievement of plurality.

    AMENDMENT OF REPLIGEN'S RESTATED CERTIFICATE OF INCORPORATION.  Approval of
the proposal to amend Repligen's Charter will require the affirmative vote of a
majority of the outstanding shares of Common Stock of Repligen entitled to vote
on the proposal. Shares voted to abstain and shares subject to broker
"non-votes" are not considered to have voted for the proposal and have the
practical effect of a vote against the proposal.

    OTHER MATTERS.  For all other matters being submitted to stockholders at the
Annual Meeting, the affirmative vote of the majority of shares present, in
person or represented by proxy, and voting on that matter is required for
approval. Shares voted to abstain are included in the number of shares present
or represented and voting on each matter. Shares subject to broker "non-votes"
are not considered to have been voted for the particular matter and have the
practical effect of reducing the number of affirmative votes required to achieve
a majority for such matter by reducing the total number of shares from which the
majority is calculated.

    EquiServe will serve as the Inspector of Elections and will count all votes
and ballots.

                     PRINCIPAL HOLDERS OF VOTING SECURITIES

    The following table sets forth, as of July 23, 1999, the name of each person
who, to Repligen's knowledge, beneficially owned more than 5% of the shares of
Common Stock of Repligen outstanding

                                       2
<PAGE>
at that date, the number of shares beneficially owned by each of these persons,
and the percentage of the outstanding shares of the Company beneficially owned
by each of these persons.

<TABLE>
<CAPTION>
                                                                                  AMOUNT AND NATURE OF
NAME AND ADDRESS OF                                                                    BENEFICIAL        PERCENT OF
  BENEFICIAL OWNERSHIP                                                                OWNERSHIP(1)        CLASS(2)
- --------------------------------------------------------------------------------  --------------------  -------------
<S>                                                                               <C>                   <C>
Paramount Capital Asset Management, Inc.(3).....................................         2,974,945             13.6%
787 Seventh Avenue
New York, NY 10019

Wellington Management Company, LLP(4)...........................................         2,927,600             13.4%
75 State Street
Boston, MA 02110

BVF Partners L.P. (5)...........................................................         1,491,850              6.8%
333 West Wacker Drive
Chicago, IL 60606
</TABLE>

- ------------------------

(1) Beneficial ownership, as such term is used herein, is determined in
    accordance with Rule 13d-3 promulgated under the Securities Exchange Act of
    1934, and includes voting and/or investment power with respect to shares of
    Common Stock of Repligen. Unless otherwise indicated, the named person
    possesses sole voting and investment power with respect to the shares. The
    shares shown include shares issuable pursuant to options or warrants held by
    the named person that may be exercised within 60 days of July 23, 1999.

(2) Percentages of ownership are based upon 21,868,085 shares of Common Stock
    issued and outstanding as of July 23, 1999. Shares of Common Stock that may
    be acquired pursuant to options or warrants that are exercisable within 60
    days of July 23, 1999 are deemed outstanding for computing the percentage
    ownership of the person holding such options or warrants, but are not deemed
    outstanding for the percentage ownership of any other person.

(3) Consists of 2,038,268 shares of Common Stock owned by The Aries Master Fund,
    a Cayman Islands exempted company (the "Master Fund"), 907,616 shares of
    Common Stock owned by Aries Domestic Fund, L.P. (the "ADF") and 29,061
    shares of Common Stock owned by Aries Domestic Fund II, L.P. (the "ADF II").
    Paramount Capital Asset Management, Inc. ("PCAM") serves as the investment
    manager to the Master Fund and the general partner of each of the ADF and
    the ADF II. Lindsay A. Rosenwald, M.D. is the chairman and sole stockholder
    of PCAM. PCAM and Dr. Rosenwald disclaim beneficial ownership of the
    securities held by the ADF, the Master Fund and the ADF II, except to the
    extent of their pecuniary interest therein, if any. Does not include 33,250
    shares of Common Stock which may be acquired pursuant to presently
    exercisable warrants owned by Dr. Rosenwald or 66,750 shares of Common Stock
    which may be acquired pursuant to presently exercisable warrants owned by
    certain other employees of PCAM. Repligen issued the warrants to Dr.
    Rosenwald and such other employees of PCAM in connection with Paramount's
    execution of a Financial Advisory Agreement dated July 15, 1999 between
    Paramount and Repligen. Paramount disclaims beneficial ownership of such
    shares of Common Stock except to the extent of its pecuniary interest
    therein, if any.

(4) Wellington Management Company, LLP ("WMC"), is an investment adviser
    registered with the Securities and Exchange Commission (the "Commission")
    under Section 203 of the Investment

                                       3
<PAGE>
    Advisers Act of 1940, as amended. WMC, in its capacity as investment
    adviser, may be deemed to have beneficial ownership of shares of Common
    Stock of Repligen that are owned of record by investment advisory clients of
    WMC. As of July 23, 1999, numerous investment advisory clients of WMC held
    of record, in the aggregate, 2,927,600 shares of Common Stock of Repligen.
    No such client is known to have such beneficial ownership with respect to
    more than five percent of this class of securities. WMC disclaims true
    beneficial ownership of such shares except to the extent of any pecuniary
    interest derived therefrom.

(5) Consists of 353,400 shares of Common Stock and 262,500 shares of Common
    Stock which may be acquired pursuant to presently exercisable warrants owned
    by Biotechnology Value Fund, L.P., a Delaware limited partnership ("BVF");
    179,200 shares of Common Stock and 112,500 shares of Common Stock which may
    be acquired pursuant to presently exercisable warrants owned by
    Biotechnology Venture Partners L.P., a Delaware limited partnership ("BVF
    Venture"); and 303,000 shares of Common Stock and 281,250 shares of Common
    Stock which may be acquired pursuant to presently exercisable warrants owned
    by certain managed accounts (the "Managed Accounts"). BVF Partners L.P., a
    Delaware limited partnership, is the general partner of BVF and BVF Venture
    and serves as the investment manager of the Managed Accounts.

                       PROPOSAL 1--ELECTION OF DIRECTORS

    The Board has fixed the number of directors at five. Directors of the
Company are elected annually to hold office until the next annual meeting of
stockholders and until their successors have been duly elected and qualified.

    Shares represented by all proxies received by the Board and not marked or
voted so as to withhold authority to vote for any individual director or for any
group of directors will be voted (unless one or more nominees are unable or
unwilling to serve) for the election of the nominees named below. The Board
knows of no reason why any nominee should be unable or unwilling to serve, but
if any nominee should be unable or unwilling to serve, proxies will be voted or
withheld in accordance with the judgment of the persons named as attorneys in
the proxies with respect to the directorship for which that nominee was unable
or unwilling to serve.

    The nominees for director are Walter C. Herlihy, Ph.D., Robert J. Hennessey,
G. William Miller, Alexander Rich, M.D. and Paul Schimmel, Ph.D. All five
nominees are currently directors of Repligen.

    The Board unanimously recommends a vote FOR each of the nominees for
election as directors.

                                       4
<PAGE>
                OCCUPATIONS OF DIRECTORS AND EXECUTIVE OFFICERS

    Repligen's executive officers are appointed by, and serve at the discretion
of, the Board. Each executive officer is a full-time employee of Repligen. The
directors and executive officers of Repligen are as follows:

<TABLE>
<CAPTION>
NAME                                            AGE                                 POSITIONS
- ------------------------------------------      ---      ---------------------------------------------------------------
<S>                                         <C>          <C>
Walter C. Herlihy, Ph.D.(3)...............          47   President, Chief Executive Officer and Director
James R. Rusche, Ph.D.....................          45   Vice President, Research and Development
Daniel P. Witt, Ph.D......................          51   Vice President, Business Development
Robert J. Hennessey.......................          53   Director
G. William Miller(1)(2)(3)................          74   Director
Alexander Rich, M.D.(2)...................          74   Director
Paul Schimmel, Ph.D.(1)(3)................          58   Director
</TABLE>

- ------------------------

(1) Member of the Compensation Committee

(2) Member of the Audit Committee

(3) Member of the Executive Committee

                            BIOGRAPHICAL INFORMATION

    WALTER C. HERLIHY, PH.D. joined Repligen in March 1996 as President, Chief
Executive Officer and Director in connection with Repligen's merger with Glycan
Pharmaceuticals, Inc. From July 1993 to March 1996, Dr. Herlihy was the
President and CEO of Glycan Pharmaceuticals, Inc. From October 1981 to June
1993, he held numerous research positions at Repligen, most recently as Senior
Vice President, Research and Development. Dr. Herlihy holds an A.B. degree in
chemistry from Cornell University and a Ph.D. in chemistry from MIT.

    JAMES R. RUSCHE, PH.D. joined Repligen in March 1996 as Vice President,
Research and Development in connection with Repligen's merger with Glycan
Pharmaceuticals, Inc. From July 1994 to March 1996, Dr. Rusche was Vice
President, Research and Development of Glycan Pharmaceuticals, Inc. From
February 1985 to June 1994, he held numerous research positions at Repligen,
most recently as Vice President, Discovery Research. Dr. Rusche holds a B.S.
degree in microbiology from the University of Wisconsin, LaCrosse and a Ph.D. in
immunology from the University of Florida.

    DANIEL P. WITT, PH.D. joined Repligen in March 1996 as Vice President,
Business Development in connection with Repligen's merger with Glycan
Pharmaceuticals, Inc. From October 1993 to March 1996, Dr. Witt was Vice
President, Business Development of Glycan Pharmaceuticals, Inc. From April 1983
to September 1993, he held numerous research positions at Repligen, most
recently as Vice President, Technology Acquisition. Dr. Witt holds a B.A. degree
in chemistry from Gettysberg College and a Ph.D. in biochemistry from the
University of Vermont.

    ROBERT J. HENNESSEY has served as a Director of Repligen since July 1999.
Mr. Hennessey has served as Chairman of the Board and Chief Executive Officer of
Genome Therapeutics Corp., a biotechnology company, since March 1993. From 1990
to 1993, Mr. Hennessey served as the President of Hennessey & Associates Ltd., a
strategic consulting firm to biotechnology and healthcare companies.

                                       5
<PAGE>
Prior to 1990, Mr. Hennessey held a variety of management positions at Merck,
SmithKline, Abbott and Sterling Drug. Mr. Hennessey is also a director of
PenWest Pharmaceuticals.

    G. WILLIAM MILLER has served as a Director of Repligen since January 1982.
Mr. Miller is the Chairman of the Board of G. William Miller & Co., Inc., a
private merchant banking firm. He has served in that capacity for over five
years. From January 1990 until February 1992, Mr. Miller was Chairman and Chief
Executive Officer of Federated Stores, Inc., an owner and operator of retail
department stores, supermarkets and real estate interests. Mr. Miller is a
former Chairman of the Board of Governors of the Federal Reserve System and
served as Secretary of the Treasury under President Carter. Mr. Miller is a
director of the Simon Property Group, Inc., a real estate investment trust,
Kleinwort Benson Australian Income Fund, Inc., GS Industries, Inc., a producer
of steel and related products and Waccamaw Corporation, a specialty retailer.

    ALEXANDER RICH, M.D., Co-Founder and Co-Chairman of the Board of Directors
of Repligen, has been on the faculty of MIT since 1958 and is the Sedgwick
Professor of Biophysics. Internationally recognized for his contributions to the
molecular biology of nucleic acids, he has determined their three-dimensional
structure and has investigated their activity in biological systems. He is
widely known for his work in elucidating the three-dimensional structure of
transfer RNA, which is a component of the protein synthesizing mechanism and for
his discovery of a novel, left-handed form of DNA. He is a member of the
National Academy of Sciences, the American Philosophical Society, the Pontifical
Academy of Sciences, Rome and a foreign member of the French Academy of
Sciences, Paris. Dr. Rich has been a Director of Repligen since March 1981. Dr.
Rich is a director of Alkermes, Inc.

    PAUL SCHIMMEL, PH.D., Co-Founder and Co-Chairman of the Board of Directors
of Repligen, has been on the faculty of the Skaggs Institute of Chemical Biology
at Scripps Research Institute since 1997. He is well known for his work in
biophysical chemistry and molecular biology. His field of specialty is the
mechanism of action of proteins and the manner in which they act upon the
nucleic acids in the cell. This work involves broad applications of recombinant
DNA technology. He is a member of the National Academy of Sciences, received the
1978 ACS/Pfizer award for excellence in enzyme research, and is co-author of a
widely read textbook on biophysical chemistry. He also previously served as the
Chairman, Director of Biological Chemistry, American Chemical Society. Dr.
Schimmel has been a Director of Repligen since March 1981. Dr. Schimmel is a
director of Alkermes, Inc. and Cubist Pharmaceuticals, Inc.

                 CERTAIN RELATIONSHIPS AND RELATED TRANSACTIONS

    Pursuant to a Financial Advisory Agreement with Paramount Capital, Inc. its
affiliates, related entities and designees (collectively "Paramount") dated as
of July 15, 1999, Paramount will provide certain financial advisory and/or
investment banking services to Repligen in exchange for consideration, including
$100,000 cash upon execution of the agreement, and the issuance of common stock
purchase warrants exercisable for 100,000 shares of Repligen's Common Stock at
$2.75 per share. The Financial Advisory Agreement also provides for the payment
of additional fees to Paramount upon the consummation of certain transactions
for which Paramount acts as Repligen's financial advisor. Lindsay Rosenwald,
M.D., the chairman of Paramount, is also the chairman of PCAM, the general
partner of ADF, ADF II and the investment manager of the Master Fund
(collectively, the "Aries Funds"). As of July 23, 1999, Dr. Rosenwald and PCAM
may be deemed to beneficially own approximately 13.6% of the outstanding Common
Stock of Repligen. Paramount disclaims beneficial ownership of the shares of

                                       6
<PAGE>
Common Stock owned by Dr. Rosenwald, PCAM and/or the Aries Funds except to the
extent of any pecuniary interest therein, if any.

    No family relationship exists among the officers and directors of Repligen.

        INFORMATION REGARDING THE BOARD OF DIRECTORS AND ITS COMMITTEES

    The Board met five times during the fiscal year ended March 31, 1999. During
the fiscal year ended March 31, 1999, no director attended fewer than 75% of the
aggregate of (i) the total number of meetings of the Board and (ii) the total
number of meetings held by all committees of the Board on which such director
served.

    The Board has a standing Audit Committee, Compensation Committee and
Executive Committee. The Audit Committee, currently consisting of Mr. Miller and
Dr. Rich, is responsible for determining the adequacy of Repligen's internal
accounting and financial controls. The Audit Committee met once with management
and Repligen's independent public accountants to review matters pertaining to
the 1999 fiscal year audit. No member of the Audit Committee is a member of
Repligen's management. The Compensation Committee, currently consisting of Dr.
Schimmel and Mr. Miller, is responsible for reviewing matters pertaining to the
compensation of Repligen's officers and the granting of stock options (other
than stock options which are automatically granted to certain members of the
Board pursuant to Repligen's stock option plan) and contributions to Repligen's
Employee Stock Ownership Plan. See "Compensation of Directors" and "Compensation
Committee Report to Shareholders." The Compensation Committee met once during
the fiscal year ended March 31, 1999. No member of the Compensation Committee is
a member of Repligen's management. The Executive Committee, currently consisting
of Mr. Miller, Dr. Schimmel and Dr. Herlihy (an employee of Repligen), is
authorized to exercise certain powers of the Board not specifically reserved to
the Board by Repligen's By-Laws or the General Corporation Law of the State of
Delaware. The Board does not have a standing nominating committee.

              STOCK OWNERSHIP OF DIRECTORS AND EXECUTIVE OFFICERS

    The following table sets forth certain information as of July 23, 1999 with
respect to beneficial ownership of shares of Repligen's Common Stock by all
directors and executive officers named in the Summary Compensation Table set
forth below under "Summary of Executive Compensation" individually, and by all
directors and executive officers of Repligen as a group.

<TABLE>
<CAPTION>
                                                                                 AMOUNT AND NATURE OF    PERCENT
                                                                                      BENEFICIAL           OF
BENEFICIAL OWNER                                                                     OWNERSHIP(1)       CLASS(2)
- ------------------------------------------------------------------------------  ----------------------  ---------
<S>                                                                             <C>                     <C>
Paul Schimmel, Ph.D.(3).......................................................            630,082         2.9%
Alexander Rich, M.D.(4).......................................................            445,700         2.0%
G. William Miller (5).........................................................            106,667           *
Robert J. Hennessey (6).......................................................             13,000           *
Walter C. Herlihy, Ph.D. (7)..................................................            326,668         1.5%
James R. Rusche, Ph.D. (8)....................................................            163,168           *
Daniel P. Witt, Ph.D. (9).....................................................            144,404           *
All directors and executive officers as group (7 persons)(10).................          1,829,689         8.4%
</TABLE>

- ------------------------

*   Less than one percent

                                       7
<PAGE>
(1) Unless otherwise indicated, the named person possesses sole voting and
    investment power with respect to the shares. The shares shown include shares
    issuable pursuant to options held by the named person that may be exercised
    within 60 days of July 23, 1999.

(2) Percentages of ownership are based upon 21,868,085 shares of Common Stock
    issued and outstanding as of July 23, 1999. Shares of Common Stock that may
    be acquired pursuant to options that are exercisable within 60 days of July
    23, 1999 are deemed outstanding for computing the percentage ownership of
    the person holding such options, but are not deemed outstanding for the
    percentage ownership of any other person.

(3) All shares held jointly with Dr. Schimmel's spouse. Includes 15,000 shares
    issuable pursuant to stock options which are exercisable within 60 days of
    July 23, 1999.

(4) Includes 60,000 shares held by Dr. Rich's spouse. Includes 15,000 shares
    issuable pursuant to stock options which are exercisable within 60 days of
    July 23, 1999.

(5) Includes 36,667 shares issuable pursuant to stock options which are
    exercisable within 60 days of July 23, 1999.

(6) Includes 13,000 shares issuable pursuant to stock options which are
    exercisable within 60 days of July 23, 1999.

(7) Includes 185,000 shares issuable pursuant to stock options which are
    exercisable within 60 days of July 23, 1999.

(8) Includes 53,500 shares issuable pursuant to stock options which are
    exercisable within 60 days of July 23, 1999.

(9) Includes 48,500 shares issuable pursuant to stock options which are
    exercisable within 60 days of July 23, 1999.

(10) Includes 366,667 shares issuable pursuant to stock options which are
    exercisable within 60 days of July 23, 1999.

                                       8
<PAGE>
                       SUMMARY OF EXECUTIVE COMPENSATION
                           SUMMARY COMPENSATION TABLE

    The table below shows compensation information with respect to services
rendered to Repligen in all capacities during the fiscal years ended March 31,
1999, 1998 and 1997 for the Chief Executive Officer and each of Repligen's other
most highly compensated executive officers who earned more than $100,000 in
salary and bonus in fiscal 1999 and were serving as executive officers as of
March 31, 1999 (collectively, the "Named Executive Officers").

<TABLE>
<CAPTION>
                                                                                                          LONG-TERM
                                                                                      ANNUAL           COMPENSATION(2)
                                                                                  COMPENSATION(1)     -----------------
                                                                    FISCAL     ---------------------  SHARES UNDERLYING
NAME AND PRINCIPLE POSITION                                          YEAR        SALARY      BONUS       OPTIONS(#)
- ----------------------------------------------------------------  -----------  ----------  ---------  -----------------
<S>                                                               <C>          <C>         <C>        <C>
Walter C. Herlihy, Ph.D.........................................        1999   $  180,000  $  25,000        400,000
President and Chief Executive Officer                                   1998      169,600     17,500         50,000
                                                                        1997      160,000     15,000             --

James R. Rusche, Ph.D...........................................        1999   $  128,000  $  15,000         30,000
Vice President, Research and Development                                1998      121,900     10,000         20,000
                                                                        1997      115,000     10,000             --

Daniel P. Witt, Ph.D............................................        1999   $  128,000  $  15,000         10,000
Vice President, Business Development                                    1998      121,900      7,500         20,000
                                                                        1997      115,000     10,000             --
</TABLE>

- ------------------------

(1) In accordance with the rules of the Securities and Exchange Commission,
    other compensation in the form of perquisites and other personal benefits
    has been omitted in those instances where the aggregate amount of such
    perquisites and other personal benefits was less than the lower of $50,000
    or 10% of the total annual salary and bonus for the Named Executive Officer
    for such year.

(2) Represents stock options granted during the fiscal years ended March 31,
    1999, 1998 or 1997 as determined by the Compensation Committee. Repligen did
    not grant any restricted stock awards or stock appreciation rights or make
    any long-term incentive plan payouts during the fiscal years ended March 31,
    1999, 1998 or 1997.

OPTION GRANTS IN LAST FISCAL YEAR

    The following table shows information regarding stock options granted to the
Named Executive Officers during the fiscal year ending March 31, 1999.

                                       9
<PAGE>
                      OPTIONS GRANTED IN LAST FISCAL YEAR

<TABLE>
<CAPTION>
                                                                                                      POTENTIAL
                                                                                                 REALIZABLE VALUE AT
                                                                                                    ASSUMED ANNUAL
                                       NUMBER OF      PERCENT OF                                 RATES OF STOCK PRICE
                                      SECURITIES     TOTAL OPTIONS                                 APPRECIATION FOR
                                      UNDERLYING      GRANTED TO       EXERCISE                    OPTION TERM (1)
                                        OPTIONS      EMPLOYEES IN        PRICE     EXPIRATION   ----------------------
NAME                                  GRANTED(#)      FISCAL YEAR      ($/SHARE)      DATE          5%         10%
- ------------------------------------  -----------  -----------------  -----------  -----------  ----------  ----------
<S>                                   <C>          <C>                <C>          <C>          <C>         <C>
Walter C. Herlihy, Ph.D.............     400,000              70%      $    1.41     4/29/2008  $  354,697  $  898,871
James R. Rusche, Ph.D...............      30,000               5%      $    1.41     4/29/2008      26,602      67,415
Daniel P. Witt, Ph.D................      10,000               2%      $    1.41     4/29/2008       8,867      22,472
</TABLE>

- ------------------------

(1) These amounts represent hypothetical gains that could be achieved from the
    exercise of respective options and the subsequent sale of the Common Stock
    underlying such options if the options were exercised immediately prior to
    the end of the option term. These gains are based on assumed rates of stock
    price appreciation of 5% and 10% compounded annually from the date the
    respective options were granted to their expiration dates. The gains shown
    are net of the option exercise price, but do not include deductions for
    taxes or other expenses associated with the exercise of the options or sale
    of the underlying shares. The actual gains, if any, on the stock option
    exercises will depend on the future performance of the Common Stock, the
    optionholder's continued employment through the option period, the date on
    which the options are exercised, and the date on which the underlying shares
    of Common Stock are sold. These rates of appreciation are mandated by the
    rules of the Securities and Exchange Commission and do not represent
    Repligen's estimate or projection of the future Common Stock price.

OPTION EXERCISES AND FISCAL YEAR-END VALUES

    The following table provides information regarding stock option exercises by
the Named Executive Officers and the number and value of the Named Executive
Officers' unexercised options at March 31, 1999.

AGGREGATED OPTION EXERCISES IN LAST FISCAL YEAR AND FISCAL YEAR-END OPTION
  VALUES

<TABLE>
<CAPTION>
                                                                                                 VALUE OF UNEXERCISED
                                    SHARES                            NUMBER OF OPTIONS          IN-THE-MONEY OPTIONS
                                   ACQUIRED                         AT FISCAL YEAR-END(2)       AT FISCAL YEAR-END(3)
                                      ON              VALUE       --------------------------  --------------------------
NAME                              EXERCISE(1)      REALIZED($)    EXERCISABLE  UNEXERCISABLE  EXERCISABLE  UNEXERCISABLE
- ------------------------------  ---------------  ---------------  -----------  -------------  -----------  -------------
<S>                             <C>              <C>              <C>          <C>            <C>          <C>
Walter C. Herlihy, Ph.D.......            --               --         72,500        477,500    $ 128,318    $   793,933
James R. Rusche, Ph.D.........            --               --         41,000         69,000       73,083        116,667
Daniel P. Witt, Ph.D..........            --               --         41,000         49,000       73,083         83,527
</TABLE>

- ------------------------

(1) None of the Named Executive Officers exercised any stock options during the
    fiscal year ended March 31, 1999.

(2) Represents the aggregate number of stock options held as of March 31, 1999
    which can and cannot be exercised pursuant to the terms and provisions of
    the applicable stock option agreements and the 1992 Repligen Corporation
    Stock Option Plan (the "Plan").

                                       10
<PAGE>
(3) The dollar values have been calculated by determining the difference between
    the fair market value of the securities underlying the options and the
    exercise price of the options. The fair market value of in-the-money options
    was calculated on the basis of the closing price per share for Common Stock
    on the Nasdaq National Market of $3.063 on March 31, 1999. All of the
    options were in-the-money as of March 31, 1999.

                           COMPENSATION OF DIRECTORS

    Drs. Schimmel and Rich, the Co-Chairmen of the Board of Directors, are
compensated pursuant to consulting agreements described below and receive no
separate compensation for attendance at meetings or otherwise as directors.

    Under the terms of the Plan, each non-employee director, beginning on
September 16, 1996, is granted an option to purchase 5,000 shares of Common
Stock at an option price equal to the fair market value of the Common Stock on
the date of grant, determined in accordance with the terms of the Plan (the
"Board Options"). These options vest in full on the first anniversary of the
date of the grant, provided such person is still a director on such anniversary.
Additionally, each newly-elected, non-employee director who joins the Board is
entitled to receive a Board Option to purchase 24,000 shares of Common Stock on
the date he or she joins the Board. These initial Board Options vest equally
over a three-year period from the date of grant. Board Options have a term of
ten years, subject to early termination in the event of death, removal or
resignation from the Board. No director is entitled to receive Board Options
covering more than an aggregate of 50,000 shares.

    Beginning in August 1998, Mr. Hennessey and Mr. Miller received $1,000 plus
expenses for each Board meeting attended.

    Repligen paid Drs. Schimmel and Rich $49,200 and $43,200, respectively,
during the fiscal year ended March 31, 1999 pursuant to consulting agreements
which have similar terms. These agreements are automatically extended for
successive one-year terms unless terminated by either party at least 90 days
prior to the next anniversary date. Dr. Schimmel's agreement continues until
September 30, 1999 and Dr. Rich's agreement continues until October 31, 1999.
Drs. Schimmel and Rich have advised Repligen that they have no present intention
of terminating their agreements.

EXECUTIVE EMPLOYMENT AGREEMENTS

    On March 14, 1996, Repligen entered into a letter of agreement with Drs.
Herlihy, Rusche, and Witt in connection with Repligen's acquisition and merger
with Glycan Pharmaceuticals, Inc. (the "Herlihy Agreement," the "Rusche
Agreement," and the "Witt Agreement," respectively). Under the terms of the
Herlihy Agreement, Dr. Herlihy is entitled to a minimum salary of $160,000 per
annum, subject to periodic increases at the discretion of the Board of
Directors. Additionally, Dr. Herlihy is eligible for participation in all of
Repligen's welfare, profit sharing, retirement and savings plans on the same
basis as other employees of Repligen. Dr. Herlihy received a stock option to
purchase 100,000 shares of the Common Stock at $1.25 per share, vesting at 20%
per annum over five years pursuant to the Herlihy Agreement. Dr. Herlihy's
employment may be terminated, with or without cause, by either party upon 30
days prior written notice. In such event, Dr. Herlihy would be entitled to
continue receiving his salary for a period of eight months or until he finds
other employment, whichever occurs first.

                                       11
<PAGE>
    Under the terms of the Rusche Agreement, Dr. Rusche is entitled to a minimum
salary of $115,000 per annum, subject to periodic increases at the discretion of
the Board of Directors. Additionally, Dr. Rusche is eligible for participation
in all of Repligen's welfare, profit sharing, retirement and savings plans on
the same basis as other employees of Repligen. Dr. Rusche received a stock
option to purchase 60,000 shares of the Common Stock at $1.25 per share, vesting
at 20% per annum over five years pursuant to the Rusche Agreement. Dr. Rusche's
employment may be terminated, with or without cause, by either party upon 30
days prior written notice. In such event, Dr. Rusche would be entitled to
continue receiving his salary for a period of six months or until he finds other
employment, whichever occurs first.

    Under the terms of the Witt Agreement, Dr. Witt is entitled to a minimum
salary of $115,000 per annum, subject to periodic increases at the discretion of
the Board of Directors. Additionally, Dr. Witt is eligible for participation in
all of Repligen's welfare, profit sharing, retirement and savings plans on the
same basis as other employees of Repligen. Dr. Witt received a stock option to
purchase 60,000 shares of the Common Stock at $1.25 per share, vesting at 20%
per annum over five years pursuant to the Witt Agreement. Dr. Witt's employment
may be terminated, with or without cause, by either party upon 30 days prior
written notice. In such event, Dr. Witt would be entitled to continue receiving
his salary for a period of six months or until he finds other employment,
whichever occurs first.

COMPENSATION COMMITTEE INTERLOCKS AND INSIDER PARTICIPATION

    The Compensation Committee currently consists of Dr. Schimmel and Mr.
Miller. No member of the Compensation Committee is a current or former employee
of Repligen. There are no Compensation Committee interlocks between Repligen and
any other entities involving any of the executive officers or directors of such
entities.

                         STOCK PRICE PERFORMANCE GRAPH

    The following graph compares the yearly percentage change in the cumulative
total stockholder return (change in stock price plus reinvested dividends) on
Repligen's Common Stock with the cumulative total return for the Nasdaq Stock
Market Index (U.S.) (the "Nasdaq Composite Index") and the Nasdaq Pharmaceutical
Stock Index (the "Nasdaq Pharmaceutical Index"). The comparisons in the graph
are required by the Securities and Exchange Commission and are not intended to
forecast or be indicative of possible future performance of Repligen's Common
Stock.

                                       12
<PAGE>
                            STOCK PERFORMANCE CHART

EDGAR REPRESENTATION OF DATA POINTS USED IN PRINTED GRAPHIC

<TABLE>
<CAPTION>
             RGEN        NASDAQ PHARMA       NASDAQ US
<S>        <C>        <C>                  <C>
1995            $100                 $100           $100
1996             $63                 $176           $136
1997             $87                 $161           $151
1998             $70                 $193           $229
1999            $181                 $246           $308
</TABLE>

    Assumes $100 invested on March 31, 1995 in each of Repligen Corporation's
Common Stock, the securities comprising the Nasdaq Composite Index and the
securities comprising the Nasdaq Pharmaceutical Index.

                 COMPENSATION COMMITTEE REPORT TO STOCKHOLDERS

    The Compensation Committee, which meets on a periodic basis, is comprised of
two non-employee members of the Board of Directors. The Committee formulates and
administers Repligen's compensation policies for the President and Chief
Executive Officer and all vice presidents of Repligen. The Committee is also
responsible for determining to whom and under what terms stock options should be
granted (other than options which are automatically granted to members of the
Board of Directors) under the Plan.

                                       13
<PAGE>
COMPENSATION PHILOSOPHY

    In designing its compensation programs, Repligen takes into account a number
of considerations, some relevant to companies in general and some relevant
primarily to biotechnology and other research and development intensive
companies. The ultimate goal of Repligen's compensation program is to motivate
each employee to enhance stockholder value, to provide a fair reward for this
effort, and to stimulate each employee's professional and personal growth. In
addition, Repligen's compensation program attempts to achieve the following:

    - Provide compensation which is consistent with Repligen's annual and
      long-term objectives and achievements;

    - Promotion and reward of individual initiative, effort and accomplishment;
      and

    - Establishment of a competitive total compensation package that enables
      Repligen to attract and retain qualified and motivated personnel.

PERFORMANCE CRITERIA

    Since Repligen is still in the process of developing its proprietary
products and because of the highly volatile nature of biotechnology stocks in
general, it is not appropriate to use the traditional performance standards,
such as profit levels and stock performance, to measure the success of Repligen
and an individual's contribution to that success.

    Accordingly, the compensation of executive officers is based, for the most
part, on the achievement of certain goals by Repligen as a whole and the
individual (and his or her business unit) concerned. The Committee therefore
examines three specific areas in formulating the compensation packages of its
three most senior executives. Criteria and specific goals within each category
are as follows:

    COMPANY PERFORMANCE:

    - The extent to which key research, clinical, product manufacturing, product
      sales and financial objectives of Repligen have been met during the
      preceding fiscal year;

    - The development, acquisition and licensing of key technology; and

    - The achievement by Repligen of certain milestones, whether specified in
      agreements with third party collaborators or determined internally.

    EXECUTIVE PERFORMANCE:

    - An executive's involvement in and responsibility for the development and
      implementation of strategic planning and the attainment of strategic
      objectives of Repligen;

    - The participation by an executive in the relationship between Repligen and
      the investment community;

    - The involvement of an executive in personnel recruitment, retention and
      morale; and

    - The responsibility of the executive in working within budgets, controlling
      costs and other aspects of expense management.

                                       14
<PAGE>
    OTHER FACTORS:

    - The necessity of being competitive with companies in the pharmaceutical
      and biotechnology industries, taking into account relative company size,
      stage of development, performance and geographic location as well as
      individual responsibilities and performance.

    MIX OF COMPENSATION

    Repligen's executive compensation has four principal components:

    - base salary;

    - annual cash bonuses;

    - incentive and/or non-qualified stock options; and

    - miscellaneous benefits.

    In each case, the Committee regularly compares the individual elements
comprising Repligen's executives' mix of compensation to that of a similar group
of other biotechnology companies.

    The comparison group is based on a multi-tiered classification of
representative companies within the biotechnology industry according to numerous
characteristics, including but not limited to company size, the number of
proprietary products, stage of development of Repligen's products and total
revenues. The tiered classification of biotechnology companies is reviewed
annually and, if appropriate, revised as members of such tiers change from year
to year.

    After completing a review of the comparison group's compensation policies,
the Committee determines competitive compensation levels for each executive
position.

    Levels of base salary are reviewed on an annual basis by the Committee. Base
salary may be altered in line with changes in compensation amongst the companies
included in the Committee's comparison group and further adjusted if the
committee determines that an executive's contribution to Repligen has increased
or decreased.

    Annual cash bonuses are voted in April and calculated as a percentage of an
executive's base salary as determined by both the bonus schedule that is
established at the beginning of each fiscal year and by the various criteria set
forth above. Stock options are also awarded from time to time based upon the
same criteria and are intended both to retain and reward the executive and to
provide further incentive for him or her to continue contributing to the
long-term success of Repligen.

Respectfully submitted by the Compensation Committee,

G. William Miller
Paul Schimmel, Ph.D.

    The report of the Compensation Committee shall not be deemed incorporated by
reference by any general statement incorporating by reference this proxy
statement into any filing under the Securities Act of 1933 or under the
Securities Act of 1934, except to the extent that Repligen specifically
incorporates this information by reference, and shall not otherwise be deemed
filed under such Acts.

                                       15
<PAGE>
         PROPOSAL 2--RATIFICATION OF SELECTION OF INDEPENDENT AUDITORS

    The Board has selected the firm of Arthur Andersen LLP, certified public
accountants, upon recommendation of the Audit Committee of the Board, as
independent auditors for Repligen to examine and report on its financial
statements for the 2000 fiscal year, which appointment is being submitted to the
stockholders for ratification at the Annual Meeting. Representatives of Arthur
Andersen LLP are expected to be present at the Annual Meeting, with the
opportunity to make a statement if they desire to do so, and to be available to
respond to appropriate questions. The appointment of the independent auditors
will be ratified if it receives the affirmative vote of the holders of a
majority of shares of the Common Stock of Repligen present at the Annual
Meeting, in person or by proxy. Submission of the appointment of the auditors to
the stockholders for ratification will not limit the authority of the Board to
appoint another accounting firm to serve as independent auditors if the present
auditors resign or their engagement is otherwise terminated.

    The Board recommends a vote FOR the ratification of Arthur Andersen LLP as
independent auditors.

          PROPOSAL 3--AMEND THE RESTATED CERTIFICATE OF INCORPORATION

    The Board has voted to recommend to the stockholders that Repligen amend its
Charter to increase the number of authorized shares of Common Stock from
30,000,000 shares to 40,000,000 shares. Shares of Repligen's Common Stock,
including the additional shares proposed for authorization, do not have
preemptive or similar rights.

    The Board believes that the authorized number of shares of Common Stock
should be increased to provide sufficient shares for such corporate purposes as
may be determined by the Board to be necessary or desirable. These purposes may
include, without limitation: facilitating broader ownership of Repligen's Common
Stock by effecting a stock split or issuing a stock dividend; acquiring other
businesses in exchange for shares of Repligen's Common Stock; and raising
capital through the sale of Repligen's Common Stock. Repligen has no
commitments, agreements or undertakings to issue any such additional shares. The
Board considers the authorization of additional shares of Repligen's Common
Stock advisable to ensure availability of shares for issuance should the
occasion arise. As of July 23, 1999, there were 21,868,085 shares of Common
Stock issued and outstanding, 3,349,477 shares of Common Stock reserved for
issuance pursuant to the Plan and 3,307,050 shares of Common Stock reserved for
issuance pursuant to previously issued warrants. If the amendment to the Charter
is approved, the Board will have the authority to issue approximately 11,475,388
additional shares of Common Stock, generally without further stockholder
approval.

    The issuance of additional shares of Repligen's Common Stock could have the
effect of diluting earnings per share and book value per share, which could
adversely affect Repligen's existing stockholders. The Board's ability to issue
additional shares of Repligen's Common Stock could make a change in control of
Repligen more difficult or costly by diluting the stock ownership of persons
seeking to obtain control of Repligen. Repligen is not aware, however, of any
pending or threatened efforts to obtain control of Repligen.

    Approval of the proposal to amend Repligen's Charter will require an
affirmative vote of a majority of the outstanding shares of Common Stock of
Repligen entitled to vote on the proposal.

                                       16
<PAGE>
    The Board recommends a vote FOR the proposal to amend Repligen's Charter to
increase the number of authorized shares of Common Stock from 30,000,000 shares
to 40,000,000 shares.

              SECTION 16 BENEFICIAL OWNERSHIP REPORTING COMPILANCE

    Section 16(a) of the Securities Exchange Act of 1934 requires Repligen's
directors, executive officers, and holders of more than ten percent of
Repligen's Common Stock (collectively, "Reporting Persons"), to file with the
Securities and Exchange Commission ("SEC") initial reports of ownership and
reports of changes in ownership of Common Stock of Repligen. Such Reporting
Persons are required by SEC regulation to furnish Repligen with copies of all
Section 16(a) reports they file. Based on its review of the copies of such
filings received by it with respect to the fiscal year ended March 31, 1999,
Repligen believes that all required persons complied with all Section 16(a)
filing requirements with respect to the fiscal year ended March 31, 1999, except
that each of Drs. Rusche, Witt, Rich, and Schimmel did not report one
transaction on a timely basis and filed a late report with respect to that
transaction. Mr. Hennessey did not report two transactions on a timely basis and
filed a late report with respect to those transactions.

                            STOCKHOLDERS' PROPOSALS

    Any proposal by a stockholder of Repligen intended to be presented at the
2000 Annual Meeting of Stockholders must be received by Repligen at its
principal executive office not later than February 1, 2000 for inclusion in
Repligen's proxy statement and form of proxy relating to that meeting. Any such
proposal must also comply with the other requirements of the proxy solicitation
rules of the SEC.

                                 OTHER BUSINESS

    Management does not know of any other matters to be brought before the
Meeting except those set forth in the notice thereof. If other business is
properly presented for consideration at the Meeting, it is intended that the
Proxies will be voted by the persons named therein in accordance with their
judgment on such matters.

    Even if you plan to attend the Meeting in person, please sign, date and
return the enclosed Proxy promptly. A postage-paid return-addressed envelope is
enclosed for your convenience. Your cooperation in giving this matter your
immediate attention and in returning your proxies will be appreciated.

                                    EXPENSES

    The cost of solicitation will be borne by Repligen, and in addition to
directly soliciting stockholders by mail, Repligen may request banks and brokers
to solicit their customers who have stock of Repligen registered in the name of
the nominee and, if so, will reimburse such banks and brokers for their
reasonable out-of-pocket costs. Solicitation by officers and employees of
Repligen may also be made of some stockholders in person or by mail or telephone
following the original solicitation. Repligen may, if appropriate, retain an
independent proxy solicitation firm to assist Repligen in soliciting proxies. If
Repligen does retain a proxy solicitation firm, Repligen would pay such firm's
customary fees and expenses.

                                       17
<PAGE>

Dear Shareholder:

Please take note of the important information enclosed with this Proxy. There
are a number of issues related to the operation of the Company that require
your immediate attention.

Your vote counts, and you are strongly encouraged to exercise your right to
vote your shares.

Please mark the boxes on the proxy card to indicate how your shares will be
voted. Please sign the card, detach it and return your proxy in the enclosed
postage paid envelope.

Thank you in advanced for your prompt consideration of these matters.

Sincerely,
Repligen Corporation

Please mark
votes as in     / X /
this example.

THE SHARES REPRESENTED BY THIS PROXY WILL BE VOTED AS DIRECTED OR, IF NO
DIRECTION IS GIVEN, WILL BE VOTED FOR THE ELECTION OF DIRECTORS AND FOR THE
PROPOSALS IN ITEM 2 AND 3, AND AUTHORITY WILL BE DEEMED GRANTED UNDER ITEM 4
TO HAVE THE PROXIES VOTED UPON SUCH ADJORNMENTS THEREOF.

<TABLE>
<CAPTION>
<S>  <C>                                                         <C>  <C>
1.   To elect five persons to the Board of Directors for the     3.   To consider and act upon a proposal to amend Repligen's
     ensuing year.                                                    Restated Certificate of Incorporation to increase the
Nominees:  Walter C. Herlihy, Ph.D., Robert J. Hennessey,             number of authorized shares of Common Stock, par value
G. William Miller, Alexander Rich, M.D., Paul Schimmel, Ph.D.         $.01 per share, from 30,000,000 shares to 40,000,000 shares.

         For                     Withheld                                 For             Against            Abstain
         / /                        / /                                   / /               / /                / /

/ /                                                              4.   In their discretion, the proxies are authorized to vote
    --------------------------------------------                      upon such other matters as may properly come before the
For all nominees except as noted above                                meeting or any adjournments thereof.

2. To ratify the selection of Arthur Andersen LLP as the         / /  MARK HERE FOR ADDRESS CHANGE AND NOTE AT LEFT.
   independent auditors of Repligen for the fiscal year
   ending March 31, 2000.                                        (If signing as attorney, executor, trustee, or guardian, please
         For             Against            Abstain              give your full title as such. If stock is held jointly, each
         / /               / /                / /                owner should sign.)

                                                                 Dated:                       , 1999
                                                                        ----------------------

                                                                 ---------------------------------------------------------------

                                                                 ---------------------------------------------------------------

                                                                 Signature(s) of Stockholder(s)

                                                                 ---------------------------------------------------------------
                                                                 Print Name(s)
</TABLE>



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