MICROSOFT CORP
SC 13G, 2000-02-14
PREPACKAGED SOFTWARE
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<PAGE>

                                 UNITED STATES
                      SECURITIES AND EXCHANGE COMMISSION
                            Washington, D.C. 20549

                                 SCHEDULE 13G

                   Under the Securities Exchange Act of 1934




                          HEALTHEON/WEBMD CORPORATION
         -------------------------------------------------------------
                                (Name of Issuer)

                  Common Stock, Par Value, $0.0001 Per Share
              ---------------------------------------------------
                        (Title of Class of Securities)

                                   422209106
                   -----------------------------------------
                                 (CUSIP Number)


                               December 31, 1999
            -------------------------------------------------------
            (Date of Event Which Requires Filing of this Statement)

Check the appropriate box to designate the rule pursuant to which this schedule
is filed:

     [_]  Rule 13d-1(b)
     [X]  Rule 13d-1(c)
     [_]  Rule 13d-1(d)


*The remainder of this cover page shall be filled out for a reporting person's
initial filing on this form with respect to the subject class of securities, and
for any subsequent amendment containing information which would alter
disclosures provided in a prior cover page.

The information required on the remainder of this cover page shall not be deemed
to be "filed" for the purpose of Section 18 of the Securities Exchange Act of
1934 ("Act") or otherwise subject to the liabilities of that section of the Act
but shall be subject to all other provisions of the Act (however, see the
Notes).
<PAGE>

- ------------------------------------------------------------------------------
  CUSIP NO.: 422209106
- ------------------------------------------------------------------------------

- ------------------------------------------------------------------------------
 1    NAME OF REPORTING PERSON

      Microsoft Corporation

      S.S. OR I.R.S. IDENTIFICATION NO. OF ABOVE PERSON

      91-1144442
- ------------------------------------------------------------------------------
      CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP
 2                                                              (a) [_]
                                                                (b) [_]

- ------------------------------------------------------------------------------
      SEC USE ONLY
 3


- ------------------------------------------------------------------------------
      CITIZENSHIP OR PLACE OF ORGANIZATION
 4
      State of Washington

- ------------------------------------------------------------------------------
                          SOLE VOTING POWER
                     5
     NUMBER OF            25,609,727

      SHARES       -----------------------------------------------------------
                          SHARED VOTING POWER
   BENEFICIALLY      6
                          -0-
     OWNED BY
                   -----------------------------------------------------------
       EACH               SOLE DISPOSITIVE POWER
                     7
    REPORTING             25,609,727

      PERSON       -----------------------------------------------------------
                          SHARED DISPOSITIVE POWER
       WITH          8
                          -0-
- ------------------------------------------------------------------------------
      AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON
 9
      25,609,727

- ------------------------------------------------------------------------------
      CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES
10
      [_]

- ------------------------------------------------------------------------------
      PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (9)
11
      16.8%

- ------------------------------------------------------------------------------
      TYPE OF REPORTING PERSON
12
      CO

- ------------------------------------------------------------------------------
<PAGE>

Item 1.

     (a)  Name of Issuer: Healtheon/WebMD Corporation (the "Issuer").

     (b)  Address of principal executive offices of the Issuer: 400 The Lenox
Building, 3999 Peachtree Road NE, Atlanta, Georgia, 30326.


Item 2.

     (a)  Name of Person Filing: Microsoft Corporation.

     (b)  Address of Principal Business Office: One Microsoft Way, Redmond,
Washington, 98052-6399.

     (c)  Citizenship: State of Washington.

     (d)  Title of Class of Securities: Common Stock, Par Value, $0.0001 Per
Share.

     (e)  CUSIP Number: 422209106.


Item 3.  Not Applicable.


Item 4.  Ownership.

     (a)  Amount beneficially owned: 25,609,727, consisting of 11,933,340 shares
of Issuer's Common Stock, and a warrant, exercisable within 60 days, for
13,676,387 shares of Issuer's Common Stock.

     (b)  Percent of class: 16.8%.

     (c)  Number of shares as to which the person has:

          (i)    Sole power to vote or to direct the vote 25,609,727.

          (ii)   Shared power to vote or to direct the vote -0-.

          (iii)  Sole power to dispose or to direct the disposition of
25,609,727.

          (iv)   Shared power to dispose or to direct the disposition of -0-.


Item 5.   Ownership of Five Percent or Less of a Class: Not applicable.


Item 6.   Ownership of More than Five Percent on Behalf of Another Person: Not
Applicable.


Item 7.   Identification and Classification of the Subsidiary Which Acquired the
Security Being Reported on By the Parent Holding Company: Not Applicable.


Item 8.   Identification and Classification of Members of the Group: Not
Applicable.


Item 9.   Notice of Dissolution of a Group: Not Applicable.
<PAGE>

Item 10.  Certification:

     By signing below I certify that, to the best of my knowledge and belief,
     the securities referred to above were not acquired and are not held for the
     purpose of or with the effect of changing or influencing the control of the
     issuer of the securities and were not acquired and are not held in
     connection with or as a participant in any transaction having that purpose
     or effect.


                                   SIGNATURE

     After reasonable inquiry and to the best of my knowledge and belief, I
certify that the information set forth in this statement is true, complete and
correct.

                                       February 14, 2000
                                       ---------------------------------
                                       Date

                                       MICROSOFT CORPORATION

                                       By /s/ Robert A. Eshelman
                                         -------------------------------
                                           Robert A. Eshelman
                                           General Counsel, Finance & Operations


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