ADVANCED MAGNETICS INC
SC 13D/A, 1997-05-16
IN VITRO & IN VIVO DIAGNOSTIC SUBSTANCES
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<PAGE>
 
                       SECURITIES AND EXCHANGE COMMISSION
                             WASHINGTON, DC  20549

                                --------------

                                  SCHEDULE 13D
                                 (RULE 13d-101)

                   UNDER THE SECURITIES EXCHANGE ACT OF 1934
                              (AMENDMENT NO. 1)/1/



                            ADVANCED MAGNETICS, INC.
                            ------------------------
                                (Name of Issuer)

                                  Common Stock
                                  ------------
                         (Title of Class of Securities)

                                  00753 P 103
                                  -----------
                                 (CUSIP Number)

                                   Hope Flack
                               BVF Partners L.P.
                       333 West Wacker Drive, Suite 1600
                            Chicago, Illinois  60606
                                 (312) 263-7777
                 --------------------------------------------
                 (Name, Address and Telephone Number of Person
               Authorized to Receive Notices and Communications)

                                 April 28, 1997
                                 --------------
            (Date of Event which Requires Filing of this Statement)

     If the filing person has previously filed a statement on Schedule 13G to
report the acquisition which is the subject of this Schedule 13D, and is filing
this schedule because of Rule 13d-1(b)(3) or (4), check the following box [_].

          Note: Six copies of this statement, including all exhibits, should be
     filed with the Commission.  See Rule 13d-1(a) for other parties to whom
     copies are to be sent.

                         (Continued on following pages)

                              (Page 1 of 7 Pages)


- --------------------------
  /1/ The remainder of this cover page shall be filled out for a reporting
   person's initial filing on this form with respect to the subject class of
   securities, and for any subsequent amendment containing information which
   would alter disclosures provided in a prior cover page.
                                        
      The information required on the remainder of this cover page shall not be
   deemed to be "filed" for the purpose of Section 18 of the Securities Exchange
   Act of 1934 or otherwise subject to the liabilities of that section of the
   Act but shall be subject to all other provisions of the Act (however, see the
   Notes).
<PAGE>
 
- -----------------------                                  ---------------------
 CUSIP NO. 00753 P 103             13D                     PAGE 2 OF 7 PAGES
- -----------------------                                  ---------------------
 
- ------------------------------------------------------------------------------
      NAME OF REPORTING PERSONS
 1    S.S. OR I.R.S. IDENTIFICATION NOS. OF ABOVE PERSONS

         BIOTECHNOLOGY VALUE FUND, L.P.

- ------------------------------------------------------------------------------
      CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP*
 2                                                              (a) [X]
                                                                (b) [_]
                                                 
- ------------------------------------------------------------------------------
      SEC USE ONLY
 3
 

- ------------------------------------------------------------------------------
 4    SOURCE OF FUNDS*

            WC

- ------------------------------------------------------------------------------
 5    CHECK BOX IF DISCLOSURE OF LEGAL PROCEEDING IS
      REQUIRED PURSUANT TO ITEMS 2(d) OR 2(e)                       [_]
            

- ------------------------------------------------------------------------------
 6    CITIZENSHIP OR PLACE OF ORGANIZATION

           DELAWARE

- ------------------------------------------------------------------------------
                          SOLE VOTING POWER
                     7   
     NUMBER OF                  -0-
 
      SHARES       -----------------------------------------------------------
                          SHARED VOTING POWER
   BENEFICIALLY      8
                                232,620
     OWNED BY
                   -----------------------------------------------------------
    REPORTING             SOLE DISPOSITIVE POWER
                     9    
      PERSON                    -0-
 
       WITH        -----------------------------------------------------------
                          SHARED DISPOSITIVE POWER
                     10
                                232,620
- ------------------------------------------------------------------------------
      AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON
11  
           232,620

- ------------------------------------------------------------------------------
      CHECK BOX IF THE AGGREGATE AMOUNT IN ROW 11 EXCLUDES CERTAIN SHARES* [_]
12                  
 
 
- ------------------------------------------------------------------------------
      PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW 11
13    
           3.4%

- ------------------------------------------------------------------------------
      TYPE OF REPORTING PERSON*
14
           PN

- ------------------------------------------------------------------------------

                     *SEE INSTRUCTION BEFORE FILLING OUT!

<PAGE>
 

- -----------------------                                  ---------------------
 CUSIP NO. 00753 P 103             13D                     PAGE 3 OF 7 PAGES
- -----------------------                                  ---------------------
 
- ------------------------------------------------------------------------------
      NAME OF REPORTING PERSONS
 1    S.S. OR I.R.S. IDENTIFICATION NOS. OF ABOVE PERSONS

         BVF PARTNERS L.P.

- ------------------------------------------------------------------------------
      CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP*
 2                                                              (a) [X]
                                                                (b) [_]
                                                 
- ------------------------------------------------------------------------------
      SEC USE ONLY
 3
 

- ------------------------------------------------------------------------------
 4    SOURCE OF FUNDS*

            OO

- ------------------------------------------------------------------------------
 5    CHECK BOX IF DISCLOSURE OF LEGAL PROCEEDING IS
      REQUIRED PURSUANT TO ITEMS 2(d) OR 2(e)                       [_]
            

- ------------------------------------------------------------------------------
 6    CITIZENSHIP OR PLACE OF ORGANIZATION

           DELAWARE

- ------------------------------------------------------------------------------
                          SOLE VOTING POWER
                     7   
     NUMBER OF                  -0-
 
      SHARES       -----------------------------------------------------------
                          SHARED VOTING POWER
   BENEFICIALLY      8
                                474,200
     OWNED BY
                   -----------------------------------------------------------
    REPORTING             SOLE DISPOSITIVE POWER
                     9    
      PERSON                     -0-
 
       WITH        -----------------------------------------------------------
                          SHARED DISPOSITIVE POWER
                     10
                                474,200
- ------------------------------------------------------------------------------
      AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON
11  
           474,200

- ------------------------------------------------------------------------------
      CHECK BOX IF THE AGGREGATE AMOUNT IN ROW 11 EXCLUDES CERTAIN SHARES* [_]
12                  
 
 
- ------------------------------------------------------------------------------
      PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW 11
13    
           7.0%

- ------------------------------------------------------------------------------
      TYPE OF REPORTING PERSON*
14
           PN

- ------------------------------------------------------------------------------

                     *SEE INSTRUCTION BEFORE FILLING OUT!


<PAGE>
 
- -----------------------                                  ---------------------
 CUSIP NO. 00753 P 103             13D                     PAGE 4 OF 7 PAGES
- -----------------------                                  ---------------------
 
- ------------------------------------------------------------------------------
      NAME OF REPORTING PERSONS
 1    S.S. OR I.R.S. IDENTIFICATION NOS. OF ABOVE PERSONS

         BVF INC.

- ------------------------------------------------------------------------------
      CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP*
 2                                                              (a) [X]
                                                                (b) [_]
                                                 
- ------------------------------------------------------------------------------
      SEC USE ONLY
 3
 

- ------------------------------------------------------------------------------
 4    SOURCE OF FUNDS*

            WC, OO

- ------------------------------------------------------------------------------
 5    CHECK BOX IF DISCLOSURE OF LEGAL PROCEEDING IS
      REQUIRED PURSUANT TO ITEMS 2(d) OR 2(e)                       [_]
            

- ------------------------------------------------------------------------------
 6    CITIZENSHIP OR PLACE OF ORGANIZATION

           DELAWARE

- ------------------------------------------------------------------------------
                          SOLE VOTING POWER
                     7   
     NUMBER OF                  -0-
 
      SHARES       -----------------------------------------------------------
                          SHARED VOTING POWER
   BENEFICIALLY      8
                                474,200
     OWNED BY
                   -----------------------------------------------------------
    REPORTING             SOLE DISPOSITIVE POWER
                     9    
      PERSON                    -0-
 
       WITH        -----------------------------------------------------------
                          SHARED DISPOSITIVE POWER
                     10
                                474,200
- ------------------------------------------------------------------------------
      AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON
11  
           474,200

- ------------------------------------------------------------------------------
      CHECK BOX IF THE AGGREGATE AMOUNT IN ROW 11 EXCLUDES CERTAIN SHARES* [_]
12                  
 
 
- ------------------------------------------------------------------------------
      PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW 11
13    
           7.0%

- ------------------------------------------------------------------------------
      TYPE OF REPORTING PERSON*
14
           IA, CO

- ------------------------------------------------------------------------------

                     *SEE INSTRUCTION BEFORE FILLING OUT!
 
<PAGE>
 
  ------------------------                          ------------------------   
 | CUSIP NO. 00753 P 103  |         13D            |    Page 5 of 7 Pages   |   
  ------------------------                          ------------------------   


     This Amendment No. 1 (this "Amendment") relates to the Statement on
 Schedule 13D (the "Statement") dated October 30, 1996, filed with the
 Securities and Exchange Commission on behalf of Biotechnology Value Fund, L.P.,
 a Delaware limited partnership ("BVF"), BVF Partners L.P., a Delaware limited
 partnership ("Partners"), and BVF Inc., a Delaware corporation ("BVF Inc." and,
 together with BVF and Partners, the "Reporting Persons") with respect to the
 Common Stock, par value $0.10 per share (the "Stock"), of Advanced Magnetics,
 Inc. ("Advanced Magnetics").

     Item 3 is hereby amended to read in its entirety as follows:

ITEM 3.   SOURCE AND AMOUNT OF FUNDS OR OTHER CONSIDERATION.

     Since March 1, 1997, Partners, in its capacity as general partner of BVF,
has purchased on behalf of such limited partnership an aggregate number of
13,800 shares of the Stock for an aggregate consideration of $163,706.13,
utilizing funds provided by BVF from its working capital pursuant to the terms
of its limited partnership agreement with Partners.
 
     Item 5 is hereby amended to read in its entirety as follows:

ITEM 5.   INTEREST IN SECURITIES OF THE ISSUER.

     (a) BVF beneficially owns 232,620 shares of the Stock, Partners
beneficially owns 474,200 shares of the Stock, and BVF Inc. beneficially owns
474,200 shares of the Stock, approximately 3.4%, 7.0% and 7.0%, respectively, of
the aggregate number of shares outstanding as of May 16, 1997.

     (b) BVF shares voting and dispositive power over the 232,620 shares of the
Stock it beneficially owns with Partners.  Partners and BVF Inc. share voting
and dispositive power over the 474,200 shares of the Stock they beneficially own
with, in addition to BVF, the managed accounts on whose behalf Partners, as
investment manager, purchased such shares. The managed accounts on whose behalf
Partners owns shares of the Stock are Investment 10 L.L.C., an Illinois limited
liability company ("ILL10"), Palamundo, L.D.C., a limited duration company
organized under the laws of the Cayman Islands ("Palamundo"), ZPG Securities,
L.L.C., a New York limited liability company ("ZPG") and Biotechnology Value
Fund, Ltd., a Cayman Islands Corporation ("BVF Ltd.").   ILL10, Palamundo, ZPG
and BVF Ltd. are collectively referred to herein as the "Accounts."  The
Accounts specialize in holding biotechnology stocks for investment purposes and
the business address of each is c/o BVF Partners L.P., 333 West Wacker Drive,
Suite 1600, Chicago, Illinois 60606.

     (c) Exhibit B attached hereto contains information as to all transactions
in the Stock by the Reporting Persons during the past 60 days.  All such
transactions were made for 
<PAGE>
 
  ------------------------                          ------------------------   
 | CUSIP NO. 00753 P 103  |         13D            |    Page 6 of 7 Pages   |   
  ------------------------                          ------------------------   

cash in open market, over-the-counter transactions. No other transactions in the
Stock have been effected by the Reporting Persons during the past 60 days.

     (d) The Accounts are entitled to receive dividends and any sale proceeds
with respect to the Stock in proportion to their respective ownership interests
therein.

     Item 7 is hereby amended to read in its entirety as follows:

ITEM 7.   MATERIAL TO BE FILED AS EXHIBITS.

     Exhibit A - Agreement Regarding Joint Filing

     Exhibit B - Transactions in the Stock by the Reporting Persons during the
last 60 days.
<PAGE>
 
  ------------------------                          ------------------------   
 | CUSIP NO. 00753 P 103  |         13D            |    Page 7 of 7 Pages   |   
  ------------------------                          ------------------------   

     After reasonable inquiry and to the best of my knowledge and belief, I
certify that the information set forth in this statement is true, complete and
correct.

Dated:  May 16, 1997

     BIOTECHNOLOGY VALUE FUND, L.P.

     By:  BVF Partners L.P., its general partner

          By:  BVF Inc., its general partner


               By:    /s/ MARK N. LAMPERT
                     ---------------------------------
                     Mark N. Lampert
                     President

     BVF PARTNERS L.P.

     By:  BVF Inc., its general partner


          By:    /s/ MARK N. LAMPERT
                --------------------------------------
                Mark N. Lampert
                President

     BVF INC.


     By:    /s/ MARK N. LAMPERT
           -------------------------------------------
           Mark N. Lampert
           President

<PAGE>
 
                                   EXHIBIT A

                        AGREEMENT REGARDING JOINT FILING
                        --------------------------------


     The undersigned, Biotechnology Value Fund, L.P., a Delaware limited
partnership, and BVF Partners L.P., a Delaware limited partnership, and BVF
Inc., a Delaware corporation, hereby agree and acknowledge that the Amendment
containing the information required by Schedule 13D, to which this Agreement is
attached as an exhibit, is filed on behalf of each of them.  The undersigned
further agree that any further amendments or supplements thereto shall also be
filed on behalf of each of them.

Dated:  May 16, 1997

     BIOTECHNOLOGY VALUE FUND, L.P.

     By:  BVF Partners L.P., its general partner

          By:  BVF Inc., its general partner


               By:    /s/ MARK N. LAMPERT
                     ---------------------------------
                     Mark N. Lampert
                     President

     BVF PARTNERS L.P.

     By:  BVF Inc., its general partner


          By:    /s/ MARK N. LAMPERT
                --------------------------------------
                Mark N. Lampert
                President

     BVF INC.


     By:    /s/ MARK N. LAMPERT
           -------------------------------------------
           Mark N. Lampert
           President

<PAGE>
 
                                   EXHIBIT B

               TRANSACTIONS IN THE STOCK BY THE REPORTING PERSONS
               --------------------------------------------------
                            DURING THE LAST 60 DAYS
                            -----------------------
<TABLE>
<CAPTION>
 
 Settlement              For the                    Price per          
 ----------              -------                    ---------                        
    Date      By      Account of     Quantity         Share     Type of Trade  Broker 
    ----      --      ----------     --------         -----     -------------  ------
======================================================================================
<S>         <C>        <C>           <C>          <C>           <C>             <C>
04/28/97     Partners   BVF            5,000      $11.5000      Purchase        DAKN
05/06/97     Partners   BVF            2,500      $11.6563      Purchase        MIST
05/16/97     Partners   BVF            6,300      $12.1250      Purchase        DAKN      
- --------------------------------------------------------------------------------------
</TABLE> 
   DAKN         =          Dakin Securities
   MIST         =          Mr. Stock


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