MORGAN STANLEY INSTITUTIONAL FUND INC
SC 13D/A, 1996-11-27
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                      SECURITIES AND EXCHANGE COMMISSION
                            WASHINGTON, D.C.  20549

                           --------------------------

                                 SCHEDULE 13D

                   UNDER THE SECURITIES EXCHANGE ACT OF 1934

                               (AMENDMENT NO. 2)

                           ---------------------------

                            GREAT LAKES REIT, INC.
                               (Name of Issuer)

                    COMMON STOCK, $.01 PAR VALUE PER SHARE
                        (Title of Class of Securities)

                                  390752 10 3
                                (Cusip Number)

                           ---------------------------

                            HAROLD J. SCHAAFF, JR.
                     MORGAN STANLEY ASSET MANAGEMENT INC.
                          1221 AVENUE OF THE AMERICAS
                           NEW YORK, NEW YORK 10020
                                (212) 296-7000

                 (Name, Address and Telephone Number of Person
               Authorized to Receive Notices and Communications)

                           --------------------------

                                   COPY TO:
                          Leonard B. Mackey, Jr, Esq.
                                Rogers & Wells
                                200 Park Avenue
                           New York, New York 10166
                                (212) 878-8000

                           --------------------------

                               NOVEMBER 19, 1996
            (Date of event which requires filing of this statement)


- -------------------------------------------------------------------------------
<square>  Check  box  if  the filing person has previously filed a statement on
     Schedule 13G to report  the  acquisition  which  is  the  subject  of this
     Schedule  13D, and is filing this schedule because of Rule 13d-1(b)(3)  or
     (4).

<square> Check box if a fee is being paid with the statement.
- -------------------------------------------------------------------------------

NG16065.1
<PAGE>

<TABLE>
<CAPTION>
<S>            <C>                          <C>                                    <C>
CUSIP No. 390752 10 3                       13D                                    Page 2
</TABLE>

<TABLE>
<CAPTION>
<S>            <C>                          <C>                                    <C>
      1.       NAME OF REPORTING PERSON
               S.S. OR I.R.S. IDENTIFICATION NOS. OF ABOVE PERSON

               MORGAN STANLEY INSTITUTIONAL FUND, INC. - U.S. REAL ESTATE PORTFOLIO
                    I.R.S.# 13-3808424

      2.       CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP
                                                                                   (a) <checked-box>
                                                                                   (b) <square>
      3.       SEC USE ONLY

      4.       SOURCES OF FUNDS
                                             WC

      5.       CHECK BOX IF DISCLOSURE OF LEGAL PROCEEDINGS IS REQUIRED PURSUANT TO ITEM 2(d) OR 2(e)
                                                                                       <square>       

      6.       CITIZENSHIP OR PLACE OF ORGANIZATION

               Maryland


           NUMBER OF                 7.       SOLE VOTING POWER           

             UNITS                                           0

         BENEFICIALLY                8.       SHARED VOTING POWER

           OWNED BY                                       643,150*

             EACH                    9.       SOLE DISPOSITIVE POWER

           REPORTING                                            0

          PERSON WITH                10.      SHARED DISPOSITIVE POWER
      
                                                           643,150*
                                                         
      11.      AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON

                                                           643,150*

      12.      CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (11) EXCLUDES CERTAIN SHARES
                                                                                       <square>

      13.      PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (11)

                                                             7.2%*

      14.      TYPE OF REPORTING PERSON

               IV, CO
</TABLE>
*    Includes 33,150  Class  A  Convertible Preferred shares of the Issuer that
     are exercisable on a one-to-one basis into Common Stock of the Issuer.
<PAGE>

<TABLE>
<CAPTION>
CUSIP No. 390752 10 3                      13D                                     Page 3



<CAPTION>
<S>            <C>                          <C>                                    <C>
      1.       NAME OF REPORTING PERSON
               S.S. OR I.R.S. IDENTIFICATION NOS. OF ABOVE PERSON

               MORGAN STANLEY SICAV SUBSIDIARY S.A.

      2.       CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP
               (a) <checked-box>
               (b) <square>                (a) <checked-box>
      3.       SEC USE ONLY


      4.       SOURCES OF FUNDS
                                            AF

      5.       CHECK BOX IF DISCLOSURE OF LEGAL PROCEEDINGS IS REQUIRED 
               PURSUANT TO ITEM 2(d) OR 2(e)
                                                                                       <square>
 
      6.       CITIZENSHIP OR PLACE OF ORGANIZATION

               Luxembourg

      
           NUMBER OF                        7.       SOLE VOTING POWER 

             UNITS                                                   0

         BENEFICIALLY                       8.       SHARED VOTING POWER

           OWNED BY                                                  411,189*

             EACH                           9.       SOLE DISPOSITIVE POWER

           REPORTING                                                 0

          PERSON WITH                       10.      SHARED DISPOSITIVE POWER
                                     
                                                                     411,189*
                                                         
      11.      AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON

                                            411,189*

      12.      CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (11) EXCLUDES CERTAIN SHARES
                                                                                       <square>

      13.      PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (11)

                                            4.6%*

      14.      TYPE OF REPORTING PERSON

                                            OO
</TABLE>
*    Includes 21,189 Class A Convertible  Preferred shares that are exercisable
     on a one-to-one basis into Common Stock of the Issuer.
<PAGE>

<TABLE>
<CAPTION>
CUSIP No. 390752 10 3                       13D                                    Page 4



<CAPTION>
<S>            <C>                          <C>                                    <C>
      1.       NAME OF REPORTING PERSON
               S.S. OR I.R.S. IDENTIFICATION NOS. OF ABOVE PERSON

               MORGAN STANLEY SICAV - U.S. REAL ESTATE SECURITIES FUND

      2.       CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP
                                                                                   (a) <checked-box>
                                                                                   (b) <square>

      3.       SEC USE ONLY


      4.       SOURCES OF FUNDS

                                            WC

      5.       CHECK BOX IF DISCLOSURE OF LEGAL PROCEEDINGS IS REQUIRED PURSUANT TO ITEM 2(d) OR 2(e)
                                                                                       <square>

      6.       CITIZENSHIP OR PLACE OF ORGANIZATION

               Luxembourg

                                     
           NUMBER OF                        7.       SOLE VOTING POWER
                                            
             UNITS                                                   0

         BENEFICIALLY                       8.       SHARED VOTING POWER       

           OWNED BY                                              411,189*

             EACH                           9.       SOLE DISPOSITIVE POWER       

           REPORTING                                                 0
                                            
          PERSON WITH                       10.      SHARED DISPOSITIVE POWER
                                     
                                                                  411,189*
                                     
                                                         
      11.      AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON

                                            411,189*

      12.      CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (11) EXCLUDES CERTAIN SHARES
                                                                                       <square>

      13.      PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (11)

                                             4.6%*

      14.      TYPE OF REPORTING PERSON
                                             OO
</TABLE>
*    Includes 21,189 Class A Convertible Preferred  shares  of  the Issuer that
     are  exercisable  on  a one-to-one basis into Common Stock of the  Issuer.
     Morgan Stanley SICAV beneficially  owns  the shares reported herein as the
     owner of all outstanding capital of Morgan  Stanley  SICAV Subsidiary S.A.
     This  holding  is being simultaneously reported herein by  Morgan  Stanley
     SICAV Subsidiary S.A.
<PAGE>

<TABLE>
<CAPTION>
CUSIP No. 390752 10 3                       13D                                    Page 5



<CAPTION>
<S>            <C>                          <C>                                    <C>
      1.       NAME OF REPORTING PERSON
               S.S. OR I.R.S. IDENTIFICATION NOS. OF ABOVE PERSON

               MORGAN STANLEY ASSET MANAGEMENT INC.
                    I.R.S.# 13-3040307

      2.       CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP
                                                                                   (a) <checked-box>
                                                                                   (b) <square>
      3.       SEC USE ONLY


      4.       SOURCES OF FUNDS

                                            OO

      5.       CHECK BOX IF DISCLOSURE OF LEGAL PROCEEDINGS IS REQUIRED PURSUANT TO ITEM 2(d) OR 2(e)
                                                                                       <square>       

      6.       CITIZENSHIP OR PLACE OF ORGANIZATION

               Delaware


           NUMBER OF                        7.       SOLE VOTING POWER

             UNITS                                                   0
                                            
         BENEFICIALLY                       8.       SHARED VOTING POWER

           OWNED BY                                             1,054,339*            

             EACH                           9.       SOLE DISPOSITIVE POWER       

           REPORTING                                                 0
                                                  
          PERSON WITH                       10.      SHARED DISPOSITIVE POWER
                                     
                                                                1,054,339*         
                                                         
                                                        
      11.      AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON

                                            1,054,339*

      12.      CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (11) EXCLUDES CERTAIN SHARES
                                                                                       <square>

      13.      PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (11)

                                            11.8%*

      14.      TYPE OF REPORTING PERSON

               IA, CO
</TABLE>
*    Includes 54,339  Class  A  Convertible  Preferred  shares  of  the Issuer,
     exercisable on a one-to-one basis into Common Stock.  Morgan Stanley Asset
     Management  Inc.  may  be  deemed  to beneficially own the shares reported
     herein  in  its  capacity  as the investment  adviser  of  Morgan  Stanley
     Institutional Fund, Inc. and  Morgan  Stanley SICAV Subsidiary S.A., whose
     holdings are being simultaneously reported herein.
<PAGE>

<TABLE>
<CAPTION>
CUSIP No. 390752 10 3                       13D                                    Page 6



<CAPTION>
<S>            <C>                         <C>                                     <C>
      1.       NAME OF REPORTING PERSON
               S.S. OR I.R.S. IDENTIFICATION NOS. OF ABOVE PERSON

               MORGAN STANLEY GROUP INC.
                    IRS# 13-283-8811

      2.       CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP
                                                                                   (a) <checked-box>
                                                                                   (b) <square>

      3.       SEC USE ONLY


      4.       SOURCES OF FUNDS

                                            OO

      5.       CHECK BOX IF DISCLOSURE OF LEGAL PROCEEDINGS IS REQUIRED PURSUANT TO ITEM 2(d) OR 2(e)
                                   
                                                                                       <square>

      6.       CITIZENSHIP OR PLACE OF ORGANIZATION

               Delaware

                                

           NUMBER OF                        7.       SOLE VOTING POWER                         

             UNITS                                                   0

         BENEFICIALLY                       8.       SHARED VOTING POWER       

           OWNED BY                                               1,054,339*        

             EACH                           9.       SOLE DISPOSITIVE POWER
                                            
           REPORTING                                                  0

          PERSON WITH                       10.      SHARED DISPOSITIVE POWER
                                            
                                                                  1,054,339*
                                                         
      11.      AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON

                                            1,054,339*

      12.      CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (11) EXCLUDES CERTAIN SHARES
                                                                                       <square>

      13.      PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (11)

                                            11.8%*

      14.      TYPE OF REPORTING PERSON

               IA, CO
</TABLE>

*    Includes  54,339  Class  A Convertible Preferred  shares  of  the  Issuer,
     exercisable on a one-to-one basis into Common Stock.  Morgan Stanley Group
     Inc. may be deemed to beneficially  own  the shares reported herein in its
     capacity as the owner of all the outstanding  capital  of  Morgan  Stanley
     Asset  Management  Inc.   This  holding  is  being simultaneously reported
     herein by Morgan Stanley Asset Management Inc.
<PAGE>


                     AMENDMENT NO. 2 TO SCHEDULE 13D


     This   Statement,  which  is  being  filed  jointly  by   Morgan   Stanley
Institutional  Fund, Inc. - U.S. Real Estate Portfolio ("MSIF"), Morgan Stanley
SICAV Subsidiary  S.A.  (the  "SICAV  Subsidiary"), Morgan Stanley SICAV - U.S.
Real Estate Securities Fund ("MSSICAV"),  Morgan  Stanley Asset Management Inc.
("MSAM") and Morgan Stanley Group Inc. ("MSGI") (each  a  "Filing  Person"  and
collectively,  the  "Filing  Persons"),  constitutes  Amendment  No.  2  to the
Statement  on  Schedule  13D relating to shares of Common Stock, par value $.01
per share (the "Shares"),  of  Great  Lakes  REIT, Inc., a Maryland Corporation
(the "Issuer") originally filed by MSIF, the SICAV  Subsidiary,  MSSICAV,  MSAM
and MSGI with the Commission on August 30, 1996, as amended by Amendment No.  1
thereto  filed  with  the  Commission  on  October  16,  1996  (as amended, the
"Schedule 13D").  Capitalized terms used but not defined in this  Amendment No.
2 shall have the meanings ascribed to them in the Schedule 13D.


ITEM 5. INTEREST IN SECURITIES OF THE ISSUER.

     The following is added to Item 5(c):

           On  November  19,  1996,  MSIF  and  the  SICAV  Subsidiary,  in   a
transaction  effected by MSAM as investment adviser, acquired 300,000 shares of
Common Stock and  16,301  shares  of  Preferred  Stock.  Of this, MSIF acquired
212,000 shares of Common Stock and 11,500 shares of  Preferred  Stock  (for  an
aggregated  purchase  price  of  $2,756,000)  and the SICAV Subsidiary acquired
88,000  shares of Common Stock and 4,801 shares  of  Preferred  Stock  (for  an
aggregated purchase price of $1,144,000).  The Common Stock and Preferred Stock
were purchased  in  the  aggregate and not for a specific price per share.  The
transaction described herein  took  place in Chicago, Illinois.  Other than the
purchases described in this Amendment  No.  2, none of Filing Persons have made
any transactions within the past 60 days.

           As had been contemplated by MSAM,  MSIF  and  the  SICAV Subsidiary,
MSAM, prior to the closing on November 19, 1996, in its capacity  as investment
adviser  to  MSIF  and  the SICAV Subsidiary, reallocated the amount of  Common
Stock and Preferred Stock  that  each  of  MSIF and the SICAV Subsidiary was to
receive  on November 19, 1996, resulting in MSIF  acquiring  44,000  additional
shares of Common Stock and 2,371 additional shares of Preferred Stock from that
originally  contemplated  in  the  initial  Schedule 13D filing.  The foregoing
allocations to MSIF resulted in a corresponding decrease in shares beneficially
owned by the SICAV Subsidiary and MSSICAV.


ITEM 6. CONTRACTS, ARRANGEMENTS, UNDERSTANDINGS  OR  RELATIONSHIPS WITH RESPECT
        TO SECURITIES OF THE ISSUER.

       The following is added to Item 6:

       There exists an agreement of Joint Filing (previously  filed  as Exhibit
7.1)  between  the  Filing Persons with respect to the filing of this Amendment
No. 2 to the Schedule 13D.


ITEM 7. MATERIAL TO BE FILED AS EXHIBITS.

       Not Applicable.

                                      7

<PAGE>

                                SIGNATURE

     After reasonable  inquiry  and  to  the best of my knowledge and belief, I
certify that the information set forth in  this statement is true, complete and
correct.

Dated:  November 26, 1996

                            MORGAN STANLEY INSTITUTIONAL FUND, INC. -
                              U.S. REAL ESTATE PORTFOLIO

                            /S/ HAROLD SCHAAFF, JR.
                            ---------------------------------------------------
                            Name:  Harold Schaaff, Jr.
                            Title:   Vice President



                            MORGAN STANLEY SICAV  - U.S. REAL ESTATE SECURITIES
                            FUND


                            /S/ KAREN FROST
                            ---------------------------------------------------
                            Name:  Karen Frost
                            Title:   Vice President



                            MORGAN STANLEY SICAV SUBSIDIARY S.A.


                            /S/ KAREN FROST
                            ---------------------------------------------------
                            Name: Karen Frost
                            Title:  Vice President



                            MORGAN STANLEY ASSET MANAGEMENT INC.


                            /S/ HAROLD SCHAAFF, JR.
                            ---------------------------------------------------
                            Name:  Harold Schaaff, Jr.
                            Title:   General Counsel



                            MORGAN STANLEY GROUP INC.


                            /S/ STUART BRESLOW
                            ---------------------------------------------------
                            Name:  Stuart Breslow
                            Title:    Principal

                                      8
<PAGE>


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