ISIS PHARMACEUTICALS INC
10-Q, 1999-05-14
PHARMACEUTICAL PREPARATIONS
Previous: JONES PROGRAMMING PARTNERS 1-A LTD, 10-Q, 1999-05-14
Next: JONES APPAREL GROUP INC, 10-Q, 1999-05-14



<PAGE>   1

                       SECURITIES AND EXCHANGE COMMISSION
                              WASHINGTON, DC 20549

                                    FORM 10-Q

(MARK ONE)

[X]     QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES
        EXCHANGE ACT OF 1934

For the quarterly period ended          March 31, 1999            
                               -----------------------------------

                                             OR

[ ]     TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES
        EXCHANGE ACT OF 1934

For the transition period from             to
                              -------------  ------------
Commission file number   0-19125  

                           ISIS PHARMACEUTICALS, INC.
             (Exact name of registrant as specified in its charter)

<TABLE>
<CAPTION>
              Delaware                                           33-0336973
<S>                                                <C>
(State or other jurisdiction of incorporation      (I.R.S. Employer Identification No.)
          or organization)
</TABLE>


                    2292 Faraday Avenue, Carlsbad, CA 92008
          (Address of principal executive offices, including zip code)


                                 (760) 931-9200
              (Registrant's telephone number, including area code)



- --------------------------------------------------------------------------------
      (Former name, former address and former fiscal year, if changed since
                                  last report)

        Indicate by check mark whether the registrant (1) has filed all reports
required to be filed by Section 13 or 15(d) of the Securities Exchange Act of
1934 during the preceding 12 months (or for such shorter period that the
registrant was required to file such reports), and (2) has been subject to such
filing requirements for the past 90 days.

                (1) Yes [X] No [ ]              (2) Yes [X] No [ ]
 
        Indicate the number of shares outstanding of each of the issuer's
classes of common stock, as of the latest practicable date.

       Common stock $.001 par value                  28,241,989 shares
       ----------------------------                  -----------------
               (Class)                         (Outstanding at May 1, 1999)



                                       1
<PAGE>   2

                                ISIS PHARMACEUTICALS, INC.
                                        FORM 10-Q
                                          INDEX


<TABLE>
<CAPTION>
                                                                                        PAGE
                                                                                        ----
<S>            <C>                                                                      <C>
PART I         FINANCIAL INFORMATION

ITEM 1:        Financial Statements

               Condensed Balance Sheets as of March 31, 1999 and December 31, 1998        3

               Condensed Statements of Operations for the three months
               ended March 31, 1999 and 1998                                              4

               Condensed Statements of Cash Flows for the three months
               ended March 31, 1999 and 1998                                              5

               Notes to Financial Statements                                              6

ITEM 2:        Management's Discussion and Analysis of Financial Condition 
               and Results of Operations

               Results of Operations                                                      7

               Liquidity and Capital Resources                                            8

               Year 2000 Computer Issues                                                  8

PART II        OTHER INFORMATION

ITEM 1:        Legal Proceedings                                                         10

ITEM 2:        Changes in Securities                                                     10

ITEM 3:        Default upon Senior Securities                                            10

ITEM 4:        Submission of Matters to a Vote of Security Holders                       10

ITEM 5:        Other Information                                                         10

ITEM 6:        Exhibits and Reports on Form 8-K                                          10

SIGNATURES                                                                               11
</TABLE>



                                       2
<PAGE>   3

                           ISIS PHARMACEUTICALS, INC.
                            CONDENSED BALANCE SHEETS
                        (in thousands, except share data)


<TABLE>
<CAPTION>
                                     ASSETS

                                                                                March 31,              December 31,
                                                                                  1999                     1998
                                                                                ---------               ---------
                                                                               (Unaudited)                (Note)
<S>                                                                            <C>                     <C>      
Current assets:
 Cash and cash equivalents                                                      $  20,310               $  34,591
 Short-term investments                                                            22,547                  24,258
 Receivable from partners                                                           5,256                   3,466
 Prepaid expenses and other current assets                                            739                     872
                                                                                ---------               ---------
         Total current assets                                                      48,852                  63,187

Property, plant and equipment, net                                                 22,374                  21,542
Patent costs, net                                                                   9,467                   9,113
Deposits and other assets                                                           2,179                   2,232
                                                                                ---------               ---------
                                                                                $  82,872               $  96,074
                                                                                =========               =========



                 LIABILITIES AND STOCKHOLDERS' EQUITY (DEFICIT)


Current liabilities:
 Accounts payable                                                               $   2,729               $   2,977
 Accrued payroll and related expenses                                               1,708                   3,088
 Accrued liabilities                                                                2,856                   2,714
 Deferred contract  revenues                                                        8,725                  10,176
 Current portion of long term debt and capital lease obligations                    3,614                   3,581
                                                                                ---------               ---------
         Total current liabilities                                                 19,632                  22,536

Long-term debt and capital lease obligations, less current portion                 78,945                  77,724

Stockholders' equity (deficit):
 Common stock, $.001 par value; 50,000,000 shares
   authorized, 27,329,445 shares and 27,053,000 shares issued
   and outstanding at March 31, 1999 and December 31, 1998,
   respectively                                                                        27                      27
 Additional paid-in capital                                                       193,904                 192,737
 Unrealized gain on investments                                                        84                     166
 Accumulated deficit                                                             (209,720)               (197,116)
                                                                                ---------               ---------
         Total stockholders' equity (deficit)                                     (15,705)                 (4,186)
                                                                                ---------               ---------
                                                                                $  82,872               $  96,074
                                                                                =========               =========
</TABLE>


Note: The balance sheet at December 31, 1998 has been derived from the audited
financial statements at that date.



                             See accompanying notes.

                                       3
<PAGE>   4

                           ISIS PHARMACEUTICALS, INC.
                       CONDENSED STATEMENTS OF OPERATIONS
                  (in thousands, except for per share amounts)
                                   (UNAUDITED)



<TABLE>
<CAPTION>
                                                       Three months ended
                                                            March 31,
                                                  1999                    1998
                                                 --------               -------- 
<S>                                              <C>                    <C>     
Revenue:
 Research and development revenues
  under collaborative agreements                 $  6,576               $  5,845

Expenses:
 Research and development                          14,316                 14,859
 General and administrative                         2,815                  1,858
                                                 --------               --------
    Total Operating Expense                        17,131                 16,717
                                                 --------               --------

Loss from operations                              (10,555)               (10,877)
Interest income                                       656                  1,050
Interest expense                                    2,705                  1,704
                                                 --------               -------- 
Net loss                                         $(12,604)              $(11,526)
                                                 ========               ========

Basic  and  diluted  net  loss  per              $   (.46)              $   (.43)
share
                                                 ========               ========

Shares used in computing basic and
   diluted net loss per share                      27,179                 26,740
                                                 ========               ========
</TABLE>



                                See accompanying notes.

                                       4
<PAGE>   5

                           ISIS PHARMACEUTICALS, INC.
                       CONDENSED STATEMENTS OF CASH FLOWS
                                 (in thousands)
                                   (UNAUDITED)


<TABLE>
<CAPTION>
                                                                                  Three months ended
                                                                                        March 31,
                                                                               1999                   1998
                                                                             --------               --------
<S>                                                                          <C>                    <C>      
Cash used in operations:                                                     $(14,042)              $(16,279)

Investing activities:
  Short-term investments                                                        1,711                  6,938
  Property and equipment
                                                                               (1,849)                (1,071)
  Other assets
                                                                                 (598)                  (322)
                                                                             --------               --------
          Net cash provided from (used in) investing activities                  (736)                 5,545
                                                                             --------               --------

Financing activities:
   Net proceeds from issuance of common stock                                   1,167                  1,090
   Proceeds from long-term borrowings                                              --                     --
   Principal payments on debt and capital lease obligations                      (670)                  (672)
                                                                             --------               --------
          Net cash provided from financing activities                             497                    418
                                                                             --------               --------
Net decrease in cash and cash equivalents                                     (14,281)               (10,316)

Cash and cash equivalents at beginning of period                               34,591                 38,102
                                                                             --------               --------
Cash and cash equivalents at end of period                                   $ 20,310               $ 27,786
                                                                             ========               ========

SUPPLEMENTAL DISCLOSURES OF CASH FLOW INFORMATION:
   Interest paid                                                             $    365               $    335
</TABLE>



                             See accompanying notes.

                                       5
<PAGE>   6

                           ISIS PHARMACEUTICALS, INC.

                          NOTES TO FINANCIAL STATEMENTS


1.      BASIS OF PRESENTATION

        The unaudited interim financial statements for the three months ended
March 31, 1999 and 1998 have been prepared on the same basis as the Company's
audited financial statements for the year ended December 31, 1998. The financial
statements include all adjustments (consisting only of normal recurring
adjustments) which the Company considers necessary for a fair presentation of
the financial position at such dates and the operating results and cash flows
for those periods. Results for the interim periods are not necessarily
indicative of the results for the entire year. For more complete financial
information, these financial statements, and notes thereto, should be read in
conjunction with the audited financial statements for the year ended December
31, 1998 included in the Company's Annual Report on Form 10-K filed with the
Securities and Exchange Commission.


2.      SUBSEQUENT EVENTS

        In April 1999, the Company established an agreement with Elan
Pharmaceuticals, an Irish Company, to form a new subsidiary of Isis for purposes
of developing a platform technology for the oral delivery of antisense drugs.
The joint venture, Orasense Ltd. ("Orasense"), a Bermuda limited company, is
initially owned 80.1% by Isis and 19.9% by Elan. In connection with the joint
venture, Elan International Services Ltd. ("EIS") purchased $15 million of
Common Stock of Isis at a premium. Isis also issued a warrant to EIS to purchase
215,000 shares of Isis Common Stock at $24.00 per share. EIS also purchased $12
million of Preferred Stock of Isis, which bears a 5% dividend payable in
Preferred Stock and is convertible into Isis Common Stock at a specified premium
or exchangeable for 30.1% ownership of Orasense. Isis contributed a portion of
the funding to Orasense to pay license fees to Elan for certain of the
technology contributed to the joint venture.



                                       6
<PAGE>   7

ITEM 2. MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND
        RESULTS OF OPERATIONS


        In addition to historical information contained in this Report, this
Report contains forward-looking statements regarding Isis' business and products
and their projected prospects and qualities as well as our relationships with
our corporate partners. Such statements are subject to certain risks and
uncertainties, particularly those inherent in the process of discovering,
developing and commercializing drugs that are safe and effective for use as
human therapeutics, and the endeavor of building a business around such
potential products. Actual results could differ materially from those discussed
in this Form 10-Q. As a result, the reader should not place undue reliance on
these forward-looking statements. Factors that could cause or contribute to such
differences include, but are not limited to, those discussed in Isis' Annual
Report on Form 10-K for the year ended December 31, 1998 which is on file with
the U.S. Securities and Exchange Commission.

        Since its inception in January 1989, almost all of Isis' resources have
been devoted to our research, drug discovery and drug development programs. Isis
is not yet profitable and expects to continue to have operating losses for the
next several years. Our revenue comes from collaborative research and
development agreements with pharmaceutical companies, research grants and
interest income. The revenue from the collaboration increases the amount of
research and development activity that Isis is able to fund and offsets a
portion of its research and development costs. During the quarter ended
September 30, 1998, Isis received approval from the U.S. Food and Drug
Administration ("FDA") to begin marketing its first product, Vitravene(TM), a
drug used to treat CMV retinitis.

RESULTS OF OPERATIONS

        Isis' revenue from collaborative research and development agreements was
$6.6 million for the quarter ended March 31, 1999, compared with $5.8 million
for the same period in 1998, a 14% increase. The revenue increase was primarily
due to revenue received from Zeneca Limited, Merck & Company and Abbott
Laboratories Inc, partnerships established subsequent to March 31, 1998. The
Company also had interest income totaling $.7 million for the quarter compared
with $1.1 million for the same period in 1998. This decrease in interest income
was primarily due to lower average investment balances in the quarter ended
March 31, 1999.

        Research and development expenses were $14.3 million for first quarter
of 1999, consistent with $14.9 million for the same period in 1998. For both
periods, research and development expenses were driven by the cost of
preclinical and clinical activities to support forward progress of compounds in
clinical trials. We expect that research and development expenses will continue
to increase as compounds continue to advance in clinical development.

        General and administrative expenses increased to $2.8 million for the
quarter ended March 31, 1999, from $1.9 million for the same period in 1998.
This increase in general and administrative expense is related to additional
staffing in general and administrative functions and outside services required
to support the growth in research and development. We expect that general and
administrative expenses will continue to increase in the future to support our
growing research and development efforts.

        Interest expense increased to $2.7 million for the first quarter of 1999
from $1.7 million in the first quarter of 1998. This increase in interest
expense is principally due to an additional $15 million follow-on private debt
financing in the second quarter of 1998. This incremental $15 million brought
the total borrowed under the private long-term debt arrangement to $40 million.
Under the terms of the financing arrangements, payment of both principal and
interest is deferred for the first five years. Therefore, of the $2.7 million
interest expense in the first quarter 1999, $1.9 million was accrued under the
long-term debt agreements and will not require current cash payment.



                                       7
<PAGE>   8

During the quarter ended March 31, 1999, Isis recorded a net loss of $12.6
million, or $.46 per share, compared with $11.5 million, or $.43 per share, for
the same period in 1998. We expect that operating losses will increase for
several more years as research and development activities grow. Operating losses
may fluctuate from quarter to quarter because of differences in the timing of
revenue and expense recognition.

        Isis believes that inflation and changing prices have not had a material
effect on its operations to date.

LIQUIDITY AND CAPITAL RESOURCES

        We have financed our operations with revenue from contract research and
development, through the sale of equity securities and the issuance of long-term
debt. From Isis' inception through March 31, 1999, Isis has earned approximately
$152 million in revenue from contract research and development. Isis has also
raised net proceeds of approximately $185 million from the sale of equity
securities since it was founded. We have borrowed approximately $80 million
under long-term debt arrangements to finance a portion of its operations.

        As of March 31, 1999, Isis had cash, cash equivalents and short-term
investments totaling $42.9 million and working capital of $29.2 million. In
comparison, we had cash, cash equivalents and short-term investments of $58.8
million and working capital of $40.7 million as of December 31, 1998. The
decreases in cash and working capital during the quarter resulted from the
funding of operating losses, investments in capital equipment and principal
payments on debt and capital lease obligations.

        The agreement with Boehringer Ingelheim provides us with a $40 million
line of credit. This line of credit is to be used to support the collaboration
cell adhesion programs. Restrictions on the credit line are based on the
anticipated collaboration costs, the amount of funds available to us, and our
average stock price over specified periods. As of March 31, 1999 this line of
credit was not available. We believe that it will be available before the end of
1999. As of March 31, 1999, the outstanding balance under this line of was $22.6
million.

        In 1997 and 1998, Isis borrowed a total of $40 million in a private
transaction. The loans bear interest at 14% per annum and must be repaid on
November 1, 2007. No payments of either principal or interest are required
during the first five years of the loans. After the first five years, interest
must be paid quarterly. No principal payments are required until November 1,
2007. In conjunction with these transactions, Isis issued warrants to purchase
800,000 shares of common stock at a price of $25 per share. The warrants issued
in connection with both of these financings expire on November 1, 2004. Because
interest is deferred during the first five years, the balance of these
borrowings will accrue to a total of $78 million on November 1, 2002. The debt
under these arrangements is carried on the balance sheet net of the amortized
amount allocated to the warrants and including accrued interest. The combined
carrying amount of these notes at March 31, 1999 was $43.2 million.

        As of March 31, 1999, our long-term obligations totaled $82.6 million,
versus $81.3 million at December 31, 1998. This increase was due to the accrual
of interest on the ten-year notes described above, partially offset by principal
repayments on existing obligations. We expect that capital lease obligations
will increase over time to fund capital equipment acquisitions required for
Isis' growing business. We will continue to use lease financing as long as the
terms remain commercially attractive. We believe that our existing cash, cash
equivalents and short-term investments, combined with interest income and
contract revenue will be sufficient to meet its anticipated requirements at
least until the end of 2000.

YEAR 2000 COMPUTER ISSUES

        Until recently many computer programs were written to store only two
digits of date-related information. Thus the programs were unable to distinguish
between the year 1900 and the year 2000. As a result, many computer experts have
significant concerns regarding how those programs will function after December
31, 1999. This is frequently referred to as the "Year 2000 Problem." Because
Isis was founded in 1989, our computer systems and equipment are relatively new
and generally not subject to the date and time issues that create the Year 2000
problems.

        A team of Isis employees is conducting our Year 2000 initiative. The
team's activities are designed to ensure that there is no adverse effect on our
core business operations and that transactions with customers, suppliers,
corporate partners and financial institutions are fully supported. Our Year 2000
plan includes the



                                       8
<PAGE>   9

following phases: inventorying critical business systems and vendors, assessment
of the probability of Year 2000 non-compliance, remediation activities including
repairing or replacing identified systems, testing, and developing contingency
plans.

        An inventory of all computer equipment, operating systems and
applications including other equipment that uses embedded microprocessors has
been completed. Compliance assessment has been completed for all critical or
important systems and equipment. Remediation activities have been completed for
all but five systems or pieces of equipment. We estimate that all required
remediation and validation will be completed by the third quarter of 1999.
Testing of our critical and important systems and applications is ongoing and is
scheduled to be completed by the third quarter of 1999. Contingency planning
will begin in the second quarter of 1999. Based on the work completed to date,
we believe that with the completed remediation work, the Year 2000 issue will
not pose significant operational problems for our computer systems and
equipment.

        We have also requested information from our significant suppliers,
corporate partners and financial institutions to ensure that those parties are
addressing Year 2000 issues where their systems could impact our operations. We
are assessing the extent to which our operations are vulnerable should those
organizations fail to properly modify their computer systems. The failure of
systems maintained by our vendors, corporate partners or financial institutions
could affect our ability to process transactions, conduct research and
development projects, manufacture products, or engage in other normal business
activities. We have received responses from all but one of the critical or
important third parties and are in the process of evaluating those responses to
identify areas of exposure. We are also in the process of identifying alternate
sources for products or services in the event that any of our present primary or
secondary vendors are not successful in resolving their Year 2000 issues. We
will continue to monitor the progress of critical and important third parties
throughout 1999 to ascertain that they achieve their Year 2000 objectives.

        Our most likely exposure to Year 2000 problems is related to our high
dependence on commercial utilities such as water and power. If the providers of
these utilities are not able to maintain service due to Year 2000 noncompliance
it could result in temporarily halting research and development activities until
the service is restored or until suitable alternate facilities in a different
geographic area could be obtained. It is not possible to precisely estimate the
length of delays in research and development projects in those circumstances,
but it could range from three to six months.

        While we believe our planning and preparations will be adequate to
address our internal Year 2000 concerns, we cannot guarantee that the systems of
other companies, on which our systems and operations rely, will be converted on
a timely basis and will not have a material effect on us. The total cost of the
Year 2000 risk assessment and remediation is funded through operating cash
flows, and we are expensing these costs as they are incurred. Based on
information obtained to date, the cost of identifying and remediating exposures
to the Year 2000 Problem is not expected to be material to our results of
operations or financial position. The estimated total cost of our Year 2000
assessment and remediation is not expected to exceed $500,000.



                                       9
<PAGE>   10

                           PART II - OTHER INFORMATION

ITEM 1.        LEGAL PROCEEDINGS

               The Company is not party to any legal proceedings.

ITEM 2.        CHANGES IN SECURITIES

               Not applicable.

ITEM 3.        DEFAULT UPON SENIOR SECURITIES

               Not applicable.

ITEM 4.        SUBMISSION OF MATTERS TO A VOTE OF SECURITY HOLDERS

               Not applicable.


ITEM 5.        OTHER INFORMATION

               Not applicable.


ITEM 6.        EXHIBITS AND REPORTS ON FORM 8-K

        a.     Exhibits

               None.

        b.     Reports on Form 8-K

               On April 30, 1999, the Company filed the following report on form
               8-K:

                      Report dated April 20, 1999 which described the joint
                      venture the Registrant entered into with Elan Corporation,
                      plc. No financial statements were filed with this report
                      on Form 8-K. Eight documents, including the Subscription,
                      Joint Development and Operating Agreement, security and
                      warrant purchase agreements and related license agreements
                      (with certain confidential information deleted) were filed
                      as an exhibit to the report.



                                       10
<PAGE>   11

                           ISIS PHARMACEUTICALS, INC.

                                   SIGNATURES



Pursuant to the requirements of the Securities Exchange Act of 1934, the
registrant has duly caused this report to be signed on its behalf by the
undersigned thereunto duly authorized.


                           ISIS PHARMACEUTICALS, INC.
                           --------------------------
                                  (Registrant)





Date:   May 8, 1998          By: /s/ STANLEY T. CROOKE
     ----------------            -----------------------------------------------
                                 Stanley T. Crooke, M.D., Ph.D.
                                 Chairman of the Board and Chief Executive 
                                 Officer
                                 (Principal Executive Officer)



Date:   May 8, 1998          By: /s/ B. LYNNE PARSHALL
     ----------------            -----------------------------------------------
                                 B. Lynne Parshall
                                 Executive Vice President and Chief Financial
                                 Officer
                                 (Principal Financial Officer)



                                       11

<TABLE> <S> <C>

<ARTICLE> 5 
<LEGEND>
THIS SCHEDULE CONTAINS SUMMARY FINANCIAL INFORMATION DERIVED FROM THE COMPANY'S
CONDENSED BALANCE SHEET AS OF MARCH 31, 1999 (UNAUDITED) AND CONDENSED
STATEMENTS OF OPERATIONS FOR THE THREE MONTHS ENDED MARCH 31, 1999 (UNAUDITED)
AND IS QUALIFIED IN ITS ENTIRETY BY REFERENCE TO SUCH FINANCIAL STATEMENTS.
</LEGEND>
<MULTIPLIER> 1,000
       
<S>                             <C>
<PERIOD-TYPE>                   3-MOS 
<FISCAL-YEAR-END>                          DEC-31-1999 
<PERIOD-START>                             JAN-01-1999 
<PERIOD-END>                               MAR-31-1999 
<CASH>                                          20,310 
<SECURITIES>                                    22,547 
<RECEIVABLES>                                    5,256 
<ALLOWANCES>                                         0 
<INVENTORY>                                          0 
<CURRENT-ASSETS>                                48,852 
<PP&E>                                          22,374 
<DEPRECIATION>                                       0 
<TOTAL-ASSETS>                                  82,872
<CURRENT-LIABILITIES>                           19,632
<BONDS>                                         78,945 
                                0
                                          0 
<COMMON>                                            27 
<OTHER-SE>                                     (15,705) 
<TOTAL-LIABILITY-AND-EQUITY>                    82,872 
<SALES>                                              0 
<TOTAL-REVENUES>                                 7,232 
<CGS>                                                0 
<TOTAL-COSTS>                                   17,131
<OTHER-EXPENSES>                                     0  
<LOSS-PROVISION>                                     0 
<INTEREST-EXPENSE>                               2,705 
<INCOME-PRETAX>                                (12,604) 
<INCOME-TAX>                                         0
<INCOME-CONTINUING>                            (12,604) 
<DISCONTINUED>                                       0 
<EXTRAORDINARY>                                      0 
<CHANGES>                                            0 
<NET-INCOME>                                   (12,604) 
<EPS-PRIMARY>                                    (0.46)
<EPS-DILUTED>                                    (0.46)
        

</TABLE>


© 2022 IncJournal is not affiliated with or endorsed by the U.S. Securities and Exchange Commission