INCYTE PHARMACEUTICALS INC
10-Q, 2000-05-15
COMMERCIAL PHYSICAL & BIOLOGICAL RESEARCH
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                                   UNITED STATES
                       SECURITIES AND EXCHANGE COMMISSION
                             WASHINGTON, D.C.  20549

                                    FORM 10-Q


    [X]     QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(D) OF THE SECURITIES
                              EXCHANGE ACT OF 1934

                  For the quarterly period ended March 31, 2000

                                       or


   [  ]     TRANSITION REPORTS PURSUANT TO SECTION 13 OR 15(D) OF THE SECURITIES
                              EXCHANGE ACT OF 1934

For  the  transition period from _____________________ to ______________________


                         Commission File Number: 0-27488

                          INCYTE PHARMACEUTICALS, INC.
             (Exact name of registrant as specified in its charter)

          Delaware               94-3136539
          --------               ----------
(State  or  other  jurisdiction  of     (IRS  Employer  Identification  No.)
incorporation  or  organization)

                                3174 Porter Drive
                          Palo Alto, California  94304
                    (Address of principal executive offices)

                                 (650) 855-0555
              (Registrant's telephone number, including area code)

Indicate by check mark whether the registrant (1) has filed all reports required
by  Section  13  or  15(d)  of  the  Securities  Exchange Act of 1934 during the
preceding 12 months (or for such shorter period that the registrant was required
to  file such reports), and (2) has been subject to such filing requirements for
the  past  90  days.
[X]     Yes     [  ]     No

The  number  of  outstanding shares of the registrant's Common Stock, $0.001 par
value,  was  31,801,867  as  of  March  31,  2000.

<PAGE>
<TABLE>
<CAPTION>

INCYTE  PHARMACEUTICALS,  INC.

INDEX





PART I: FINANCIAL INFORMATION                                                                   PAGE
- ----------------------------------------------------------------------------------------------  ----
<S>                                                                                             <C>

ITEM 1  Financial Statements - Unaudited

            Consolidated Balance Sheets. . . . . . . . . . . . . . . . . . . . . . . . . . . .     3

            Consolidated Statements of Operations. . . . . . . . . . . . . . . . . . . . . . .     4

            Consolidated Statements of Comprehensive Income (Loss) . . . . . . . . . . . . . .     5

            Consolidated Statements of Cash Flows. . . . . . . . . . . . . . . . . . . . . . .     6

            Notes to Consolidated Financial Statements . . . . . . . . . . . . . . . . . . . .     7

ITEM 2  Management's Discussion and Analysis of Financial Condition and Results of Operations.    11

ITEM 3  Quantitative and Qualitative Disclosures about Market Risk . . . . . . . . . . . . . .    27

PART II: OTHER INFORMATION
- ----------------------------------------------------------------------------------------------

ITEM 1  Legal Proceedings. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .    28

ITEM 2  Changes in Securities. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .    29

ITEM 3  Defaults Upon Senior Securities. . . . . . . . . . . . . . . . . . . . . . . . . . . .    29

ITEM 4  Submission of Matters to a Vote of Security Holders. . . . . . . . . . . . . . . . . .    29

ITEM 5  Other Information. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .    29

ITEM 6  Exhibits and Reports on Form 8-K . . . . . . . . . . . . . . . . . . . . . . . . . . .    30

             Signatures. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .    31

             Exhibit Index . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .    32
</TABLE>




<PAGE>
PART  I:  FINANCIAL  INFORMATION
ITEM  1   FINANCIAL  STATEMENTS
<TABLE>
<CAPTION>


                                  INCYTE PHARMACEUTICALS, INC.
                                  CONSOLIDATED BALANCE SHEETS
                                         (in thousands)
                                          (unaudited)


<S>                                                                 <C>          <C>
                                                                     MARCH 31,    DECEMBER 31,
                                                                       2000           1999*
                                                                    -----------  --------------
ASSETS
Current assets:
      Cash and cash equivalents. . . . . . . . . . . . . . . . . .  $  421,334   $      32,220
      Marketable securities - available-for-sale . . . . . . . . .     270,820          34,717
      Accounts receivable, net . . . . . . . . . . . . . . . . . .      14,368          26,608
      Prepaid expenses and other current assets. . . . . . . . . .      22,418          15,956
                                                                    -----------  --------------
            Total current assets . . . . . . . . . . . . . . . . .     728,940         109,501

Property and equipment, net. . . . . . . . . . . . . . . . . . . .      73,562          67,293
Long-term investments. . . . . . . . . . . . . . . . . . . . . . .      41,272          19,275
Goodwill and other intangible assets, net. . . . . . . . . . . . .      13,966          14,564
Deposits and other assets. . . . . . . . . . . . . . . . . . . . .      17,952          11,301
                                                                    -----------  --------------
            Total assets . . . . . . . . . . . . . . . . . . . . .  $  875,692   $     221,934
                                                                    ===========  ==============

LIABILITIES AND STOCKHOLDERS' EQUITY
Current liabilities:
      Accounts payable . . . . . . . . . . . . . . . . . . . . . .  $   11,903   $       6,501
      Accrued compensation . . . . . . . . . . . . . . . . . . . .       6,816           6,731
      Accrued and other current liabilities. . . . . . . . . . . .      11,138          11,767
      Deferred revenue . . . . . . . . . . . . . . . . . . . . . .      38,092          26,459
                                                                    -----------  --------------
            Total current liabilities. . . . . . . . . . . . . . .      67,949          51,458

Non-current portion of capital lease obligations and note payable.           -             194
Convertible subordinated notes . . . . . . . . . . . . . . . . . .     203,423               -
                                                                    -----------  --------------
            Total liabilities. . . . . . . . . . . . . . . . . . .     271,372          51,652
                                                                    -----------  --------------

Stockholders' equity:
      Common stock . . . . . . . . . . . . . . . . . . . . . . . .          32              29
      Additional paid-in capital . . . . . . . . . . . . . . . . .     641,873         222,805
      Deferred compensation. . . . . . . . . . . . . . . . . . . .        (514)           (806)
      Receivable from stockholders . . . . . . . . . . . . . . . .           -             (20)
      Accumulated other comprehensive income (loss). . . . . . . .      26,275           3,443
      Accumulated deficit. . . . . . . . . . . . . . . . . . . . .     (63,346)        (55,169)
                                                                    -----------  --------------
            Total stockholders' equity . . . . . . . . . . . . . .     604,320         170,282
                                                                    -----------  --------------
            Total liabilities and stockholders' equity . . . . . .  $  875,692   $     221,934
                                                                    ===========  ==============

<FN>



                                     See accompanying notes

</TABLE>



<PAGE>
<TABLE>
<CAPTION>

                           INCYTE PHARMACEUTICALS, INC.
                       CONSOLIDATED STATEMENTS OF OPERATIONS
                     (in thousands, except per share amounts)
                                    (unaudited)



                                                        FOR  THE  THREE  MONTHS  ENDED
                                                                    MARCH  31,
                                                                  2000      1999
                                                               ---------  --------
<S>                                                            <C>        <C>
Revenues. . . . . . . . . . . . . . . . . . . . . . . . . . .  $ 40,754   $37,630

Costs and expenses:
 Research and development . . . . . . . . . . . . . . . . . .    41,334    31,244
 Selling, general and administrative. . . . . . . . . . . . .    14,821     8,379
                                                               ---------  --------
Total costs and expenses. . . . . . . . . . . . . . . . . . .    56,155    39,623

Loss from operations. . . . . . . . . . . . . . . . . . . . .   (15,401)   (1,993)

Interest and other income, net. . . . . . . . . . . . . . . .    10,404     1,597
Interest expense. . . . . . . . . . . . . . . . . . . . . . .    (1,897)     (138)
Losses from joint venture . . . . . . . . . . . . . . . . . .    (1,283)   (1,376)
                                                               ---------  --------
Net loss. . . . . . . . . . . . . . . . . . . . . . . . . . .  $ (8,177)  $(1,910)
                                                               =========  ========


Basic and diluted net loss per share. . . . . . . . . . . . .  $  (0.27)  $ (0.07)
                                                               =========  ========

Shares used in computing basic and diluted net loss per share    30,306    27,879
                                                               =========  ========
</TABLE>


                             See accompanying notes


<PAGE>
                          INCYTE PHARMACEUTICALS, INC.
             CONSOLIDATED STATEMENTS OF COMPREHENSIVE INCOME (LOSS)
                                 (in thousands)
                                   (unaudited)
<TABLE>
<CAPTION>


                                                   FOR  THE  THREE  MONTHS  ENDED
                                                              MARCH  31,
                                                            2000      1999
                                                          --------  --------
<S>                                                       <C>       <C>
Net loss . . . . . . . . . . . . . . . . . . . . . . . .  $(8,177)  $(1,910)

Other comprehensive income (loss), net of taxes:
     Unrealized gains (losses) on marketable securities.   22,830      (402)
     Foreign currency translation adjustments. . . . . .        2      (150)
Other comprehensive income (loss). . . . . . . . . . . .   22,832      (552)
                                                          --------  --------
Comprehensive income (loss). . . . . . . . . . . . . . .  $14,655   $(2,462)
                                                          ========  ========

</TABLE>



                             See accompanying notes

<PAGE>
<TABLE>
<CAPTION>

                                 INCYTE PHARMACEUTICALS, INC.
                            CONSOLIDATED STATEMENTS OF CASH FLOWS
                                        (in thousands)
                                         (unaudited)


     THREE  MONTHS  ENDED
     MARCH  31,

<S>                                                                     <C>         <C>
                                                                             2000       1999
                                                                        ----------  ---------

CASH FLOWS FROM OPERATING ACTIVITIES:
     Net loss. . . . . . . . . . . . . . . . . . . . . . . . . . . . .  $  (8,177)  $ (1,910)
     Adjustments to reconcile net loss to net cash provided by
         operating activities:
         Depreciation and amortization . . . . . . . . . . . . . . . .      8,114      6,029
         Losses in joint venture . . . . . . . . . . . . . . . . . . .      1,283      1,376
         Gain on sale of long-term investment. . . . . . . . . . . . .     (5,417)         -
         Changes in certain assets and liabilities:
              Accounts receivable. . . . . . . . . . . . . . . . . . .     12,240      4,605
              Prepaid expenses and other assets. . . . . . . . . . . .     (7,684)    (1,186)
              Accounts payable . . . . . . . . . . . . . . . . . . . .      5,402     (1,751)
              Accrued and other current liabilities. . . . . . . . . .       (275)       466
              Deferred revenue . . . . . . . . . . . . . . . . . . . .     11,633     24,033
                                                                        ----------  ---------
Net cash provided by operating activities. . . . . . . . . . . . . . .     16,119     31,662
                                                                        ----------  ---------

CASH FLOWS FROM INVESTING ACTIVITIES:
     Proceeds from the sale of long-term investments . . . . . . . . .      5,417          -
     Capital expenditures. . . . . . . . . . . . . . . . . . . . . . .    (12,490)    (8,927)
     Purchases of marketable securities. . . . . . . . . . . . . . . .   (247,851)   (14,990)
     Sales and maturities of marketable securities . . . . . . . . . .     11,298     25,824
                                                                        ----------  ---------
Net cash provided by (used in) investing activities. . . . . . . . . .   (243,626)     1,907
                                                                        ----------  ---------

CASH FLOWS FROM FINANCING ACTIVITIES:
     Proceeds from exercise of employee stock options. . . . . . . . .     20,972        368
     Proceeds from issuance of common stock. . . . . . . . . . . . . .    398,290          -
     Proceeds from the issuance of convertible subordinated notes, net    196,800          -
     Repayment of receivable from stockholder. . . . . . . . . . . . .         20          -
     Principal payments on capital lease obligations and note
          payable. . . . . . . . . . . . . . . . . . . . . . . . . . .       (463)      (289)
                                                                        ----------  ---------
Net cash provided by financing activities. . . . . . . . . . . . . . .    615,619         79
                                                                        ----------  ---------

Effect of exchange rate on cash and cash equivalents . . . . . . . . .          2       (150)
                                                                        ----------  ---------

Net increase in cash and cash equivalents. . . . . . . . . . . . . . .    389,114     33,498
Cash and cash equivalents at beginning of period . . . . . . . . . . .     32,220     50,048
                                                                        ----------  ---------
Cash and cash equivalents at end of period . . . . . . . . . . . . . .  $ 421,334   $ 83,546
                                                                        ==========  =========
</TABLE>



                             See accompanying notes


<PAGE>
                                     ======
                          INCYTE PHARMACEUTICALS, INC.
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                                 MARCH 31, 2000
                                   (UNAUDITED)

1.  ORGANIZATION  AND  BUSINESS

          Incyte  Pharmaceuticals,  Inc.  (the  "Company")  was  incorporated in
Delaware  in  April  1991.  The  Company  designs, develops, and markets genomic
information-based  tools  including  database  products, genomic data management
software  tools,  microarray-based gene expression services and genomic reagents
and  related  services. The Company's genomic databases integrate bioinformatics
software  with  proprietary  and,  when  appropriate, publicly available genetic
information  to  create  information-based  tools  used  by  pharmaceutical  and
biotechnology  companies  and  academic researchers to understand disease and to
discover and develop drugs. In the first quarter of 2000, the Company's Board of
Directors approved an amendment to the Company's Certificate of Incorporation to
change  the  Company's  name  to  Incyte  Genomics,  Inc.  The amendment will be
submitted  for  stockholder  approval  at  the annual meeting to be held in June
2000.

2.  BASIS  OF  PRESENTATION

The  accompanying unaudited consolidated financial statements have been prepared
in  accordance  with  generally  accepted  accounting  principles  for  interim
financial  information  and with the instructions to Form 10-Q and Article 10 of
Regulation  S-X. The consolidated balance sheet as of March 31, 2000, statements
of  operations for the three months ended March 31, 2000 and 1999, statements of
comprehensive  net  income  (loss) for the three months ended March 31, 2000 and
1999  and the statements of cash flows for the three months ended March 31, 2000
and  1999  are  unaudited,  but  include  all  adjustments (consisting of normal
recurring  adjustments)  which  the  Company  considers  necessary  for  a  fair
presentation of the financial position, operating results and cash flows for the
periods  presented. The balance sheet at December 31, 1999 has been derived from
audited  financial  statements.

      Although  the  Company  believes  that  the disclosures in these financial
statements  are  adequate  to  make  the  information  presented not misleading,
certain  information  and  footnote  information  normally included in financial
statements  prepared in accordance with generally accepted accounting principles
have  been  condensed  or  omitted  pursuant to the rules and regulations of the
Securities  and  Exchange  Commission.

     Results  for  any  interim period are not necessarily indicative of results
for any future interim period or for the entire year. The accompanying financial
statements should be read in conjunction with the financial statements and notes
thereto  included in the Company's Annual Report on Form 10-K for the year ended
December  31,  1999.

3.  PROPERTY  AND  EQUIPMENT

     Property  and  equipment  consisted  of:
<TABLE>
<CAPTION>


<S>                                             <C>          <C>
                                                 MARCH 31,    DECEMBER 31,
                                                   2000           1999
                                                -----------  --------------

Office equipment . . . . . . . . . . . . . . .  $    5,893   $       4,630
Laboratory equipment . . . . . . . . . . . . .      25,735          25,297
Computer equipment . . . . . . . . . . . . . .      56,032          52,565
Leasehold improvements . . . . . . . . . . . .      44,412          37,941
                                                -----------  --------------
                                                   132,072         120,433
Less accumulated depreciation and amortization     (58,510)        (53,140)
                                                -----------  --------------
                                                $   73,562   $      67,293
                                                ===========  ==============
</TABLE>


4.  CONVERTIBLE  SUBORDINATED  NOTES

          In  February  2000,  in  a  private placement, the Company issued $200
million  of  convertible  subordinated  notes, which resulted in net proceeds of
approximately  $196.8  million.  The  notes  bear  interest  at  5.5%,  payable
semi-annually  on  March  1  and  September 1, and are due February 1, 2007. The
notes  are subordinated to all senior indebtedness, as defined. The notes can be
converted  at the option of the holder at an initial conversion price of $134.84
per  share,  subject  to  adjustment. The Company may, at its option, redeem the
notes  at  any  time  before  February  7, 2003, but only if the Company's stock
exceeds  150%  of  the  conversion  price  for 20 trading days in a period of 30
consecutive  trading  days. On or after February 7, 2003 the Company may, at its
option,  redeem the notes at specific prices. Holders may require the Company to
repurchase  the  notes  upon  a  change  in  control,  as  defined.

5.  REVENUE  RECOGNITION

          Revenues  are  recognized  when  persuasive evidence of an arrangement
exists, delivery has occurred or services have been rendered, the price is fixed
and  determinable  and  collectibility  is  reasonably  assured.  For  database
collaboration  agreements,  revenues are recognized evenly over the term of each
agreement.  Revenue  is  deferred for fees received before earned. Revenues from
custom  orders,  such  as  custom  sequencing,  and reagents are recognized upon
completion and delivery. Revenues from genomic screening services are recognized
upon  completion.  Revenue  from  gene  expression microarray services includes;
technology  access  fees, which are generally recognized ratably over the access
term, and usage fees which are recognized at the completion of key stages in the
performance  of the service, in proportion to costs incurred. In accordance with
SOP  97-2,  software  revenue  is allocated between license fees and maintenance
fees  with  the  license  revenue  being  recognized  upon  installation,  and
maintenance  fees  recognized  evenly  over  the  maintenance  term.

6.  LOSS  PER  SHARE

     Basic  net  loss  per  share  is computed by dividing net loss available to
common  stockholders (numerator) by the weighted average number of common shares
outstanding  (denominator) during the period and excludes the dilutive effect of
stock  options.

     The following is a reconciliation of the numerators and denominators of the
basic  and  diluted  net  loss  per share computations for the periods presented
below.
<TABLE>
<CAPTION>

     THREE  MONTHS  ENDED
     MARCH  31,

<S>                                                <C>       <C>
                                                      2000      1999
                                                   --------  --------
Numerator:
 Net loss . . . . . . . . . . . . . . . . . . . .  $(8,177)  $(1,910)
                                                   ========  ========

Denominator:
 Denominator for basic net loss
       Per share - weighted-average shares. . . .   30,306    27,879

 Dilutive potential common shares
             Stock options. . . . . . . . . . . .        -         -
             Convertible subordinated notes . . .        -         -
                                                   --------  --------
       Denominator for diluted net loss per share   30,306    27,879
                                                   ========  ========

Basic net loss per share. . . . . . . . . . . . .  $ (0.27)  $ (0.07)
                                                   ========  ========

Diluted net loss per share. . . . . . . . . . . .  $ (0.27)  $ (0.07)
                                                   ========  ========

</TABLE>


          Options  to  purchase  4,237,496  and 4,944,707 shares of common stock
were outstanding at March 31, 2000 and 1999, respectively, and notes convertible
into  1,483,250  shares  of common stock were outstanding at March 31, 2000, but
were  not  included  in  the computation of diluted net loss per share, as their
effect  was  antidilutive.

7.  JOINT  VENTURE

     In  September  1997,  the  Company  formed  a  joint venture, diaDexus, LLC
("diaDexus"),  with  SmithKline  Beecham  Corporation  ("SB") which will utilize
genomic and bioinformatic technologies in the discovery and commercialization of
molecular diagnostics. The Company held a 50 percent equity interest in diaDexus
and  accounted  for  the  investment  under the equity method. In July 1999, the
Company  and  SB  each  invested  an additional $2.5 million in diaDexus through
convertible notes that matured in April 2000. The notes had an interest at 5.6%,
and  were  subordinate  to  all  other  claims.

On  April  6,  2000,  diaDexus  obtained  additional financing through a private
equity  offering.  In conjunction with the offering, diaDexus repaid in full the
$2.5  million  principal  amount  of,  together  with  accrued  interest on, the
convertible note held by the Company. Under diaDexus' new capital structure, the
Company 's investment is below 20% and the Company' no longer has the ability to
exert significant influence over diaDexus. Accordingly, the Company will account
for  its  investment  in  diaDexus under the cost method of accounting as of the
date  of  the  financing.

     diaDexus  purchased  $0.6  million  of  contract  sequencing and microarray
services from the Company in the three months ended March 31, 2000, diaDexus did
not  make  similar  purchases  in  1999.

8.  SEGMENT  REPORTING

     The  Company  operates  primarily  in  one  reportable segment: the design,
development,  and  marketing of genomic information based tools, and follows the
requirements  of  SFAS  131,  Disclosures  about  Segments  of an Enterprise and
Related  Information.  For  the  three  months ended March 31, 2000, the Company
recorded  revenue  from  customers  throughout  the United States and in Canada,
Austria,  Belgium,  France,  Germany,  Israel, Netherlands, Switzerland, and the
United  Kingdom.  Export  revenue  for the three months ended March 31, 2000 and
1999  were  $11,487,000  and  $10,783,000,  respectively.

9.  NEW  PRONOUNCEMENTS

          In  June  1998,  the  FASB  issued  Statement  No. 133, Accounting for
Derivative  Instruments  and  Hedging  Activities.  ("SFAS  133").  SFAS  133
established  standards  for  accounting and reporting derivative instruments and
hedging  activities. In June 1999, The FASB issued Statement No. 137, Accounting
for  Derivative  Instruments  and Hedging Activities - Deferral of the Effective
Date of FASB Statement No. 133 ("SFAS 137"). This statement defers the effective
date  of  SFAS  133  until  June  15, 2000. Application of SFAS 133 will have no
impact  on  the  consolidated  financial  position  or  results of operations as
currently  reported.

          In  December 1999, the Securities and Exchange Commission issued Staff
Accounting  Bulletin  No. 101, Revenue Recognition in Financial Statements ("SAB
101").  Among other things, SAB 101 discusses the SEC staff's view on accounting
for non-refundable up-front fees. The Company is currently evaluating SAB 101 as
to  whether it would have any material impact on the Company. Should the Company
determine  that  a  change  in its accounting policy is necessary, such a change
will  be  made  effective  in  the  second quarter of 2000 and would result in a
charge  to  results  of operations for the cumulative effect of the change. This
amount,  if  recognized, would be recorded as deferred revenue and recognized as
revenue  in  future  periods. Financial statements prior to January 1, 2000 will
not  be  restated.

10.  LITIGATION

          In  January  1998,  Affymetrix, Inc. ("Affymetrix") filed a lawsuit in
the  United  States  District  Court  for the District of Delaware, subsequently
transferred  to  the  United  States District Court for the Northern District of
California  in  November  1998,  alleging  infringement  of  U.S.  patent number
5,445,934 (the " '934 Patent") by both Synteni and Incyte. The complaint alleges
that  the  '934  Patent  has  been  infringed  by  the  making,  using, selling,
importing,  distributing  or offering to sell in the U.S. high density arrays by
Synteni  and  Incyte  and that such infringement was willful. Affymetrix seeks a
permanent  injunction  enjoining Synteni and Incyte from further infringement of
the  '934  Patent and, in addition, seeks damages, costs and attorney's fees and
interest.  Affymetrix further requests that any such damages be trebled based on
its  allegation  of  willful  infringement  by  Incyte  and  Synteni.

          In  September  1998,  Affymetrix  filed  an  additional lawsuit in the
United  States  District  Court  for  the  District  of  Delaware,  subsequently
transferred  to  the  United  States District Court for the Northern District of
California  in  November  1998,  alleging infringement of the U.S. patent number
5,800,992  (the  "  '992  Patent")  and U.S. patent number 5,744,305 (the " '305
Patent")  by both Synteni and Incyte. The complaint alleges that the '305 Patent
has  been  infringed  by  the making, using, selling, importing, distributing or
offering to sell in the United States high density arrays by Synteni and Incyte,
that the '992 Patent has been infringed by the use of Synteni's and Incyte's GEM
microarray  technology  to  conduct  gene  expression monitoring using two-color
labeling,  and  that such infringement was willful. Affymetrix seeks a permanent
injunction  enjoining  Synteni  and Incyte from further infringement of the '305
and  '992  Patents  and,  in  addition,  Affymetrix  had  sought  a  preliminary
injunction  enjoining  Incyte  and Synteni from using Synteni's and Incyte's GEM
microarray  technology  to  conduct  gene  expression monitoring using two-color
labeling as described in the '992 Patent. Affymetrix's request for a preliminary
injunction  was denied in May 1999. As a result of the assignment of the case to
a new judge, all scheduled trial and pretrial dates have been vacated. The court
is  expected  to  set  a  new  schedule  in  late  July  2000.

          In April 1999, the Board of Patent Appeals and Interferences of United
States  Patent and Trademark Office (PTO) declared interferences between pending
patent  applications  licensed exclusively to Incyte and the Affymetrix '305 and
'992  Patents.  An  interference proceeding is invoked by the PTO when more than
one  patent applicant claims the same invention. The Board of Patent Appeals and
Interferences  evaluates all relevant facts, including those bearing on first to
invent, validity, enablement and scope of claims, and then makes a determination
as  to  who,  if anyone, is entitled to the patent on the disputed invention. In
September  1999,  the  Board of Patent Appeals and Interferences determined that
Incyte  had not met its prima facie case, and ruled that the patents licensed by
Incyte  and  Synteni from Stanford University were not entitled to priority over
corresponding  claims  in  the two Affymetrix patents. The Company is seeking de
novo  review  of the Board decisions in the United States District Court for the
Northern  District  of  California.

     Incyte  and  Synteni  believe  they have meritorious defenses and intend to
defend  the suits vigorously. However, there can be no assurance that Incyte and
Synteni  will  be  successful  in  the defense of these suits. At this time, the
Company cannot reasonably estimate the possible range of any loss resulting from
these suits due to uncertainty regarding the ultimate outcome. Regardless of the
outcome,  this  litigation has resulted and is expected to continue to result in
substantial  expenses  and  diversion of the efforts of management and technical
personnel.  Further,  there  can  be  no  assurance that any license that may be
required as a result of this suit or the outcome thereof would be made available
on  commercially  acceptable  terms,  if  at  all.

11.  PRIVATE  PLACEMENT  OF  EQUITY

     In  February  2000, in a private placement, the Company issued 2,000,000 of
its  common  stock at a price of $211.00 per share, resulting in net proceeds of
$398.3  million.

<PAGE>
PART  I:  FINANCIAL  INFORMATION
ITEM  2


                      MANAGEMENT'S DISCUSSION AND ANALYSIS
                OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS


     This  Management's  Discussion  and  Analysis  of  Financial  Condition and
Results of Operations as of March 31, 2000 and for the three month periods ended
March  31,  2000  and  1999  should  be  read  in conjunction with the unaudited
condensed  consolidated financial statements and notes thereto set forth in Item
1  of this report and the section entitled "Management's Discussion and Analysis
of Financial Condition and Results of Operations" in the Company's Annual Report
on  Form  10-K  for  the  year  ended  December  31,  1999.

     When  used  in  this  discussion,  the  words  "expects,"  "anticipates,"
"estimates,"  and  similar  expressions are intended to identify forward-looking
statements.  These statements, which include statements as to expected net loss,
expected  expenditure  levels,  expected  cash  flows,  the  adequacy of capital
resources, and growth in operations, are subject to risks and uncertainties that
could  cause  actual  results  to  differ materially from those projected. These
risks  and  uncertainties include, but are not limited to, those risks discussed
below,  as  well  as  the  extent  of  utilization of genomic information by the
biotechnology,  pharmaceutical,  and  agricultural industries; risks relating to
the  development of new products and their use by potential collaborators of the
Company;  the  impact  of technological advances and competition; the ability of
the  Company  to  obtain  and retain customers; competition from other entities;
early  termination  of a database collaboration agreement or failure to renew an
agreement  upon expiration; the ability to successfully integrate the operations
of recent business combinations; the cost of accessing or acquiring technologies
developed  by  other  companies;  uncertainty  as  to  the  scope  of  coverage,
enforceability  or  commercial  protection  from  patents  that  issue  on  gene
sequences  and  other genetic information; developments in and expenses relating
to  litigation  and interference proceedings; the results and viability of joint
ventures  and  businesses  in  which  the  Company has purchased equity; and the
matters  discussed  in  "Factors That May Affect Results." These forward-looking
statements speak only as of the date hereof. The Company expressly disclaims any
obligation  or  undertaking  to release publicly any updates or revisions to any
forward-looking  statements  contained  herein  to  reflect  any  change  in the
Company's  expectations  with regard thereto or any change in events, conditions
or  circumstances  on  which  any  such  statement  is  based.

     Incyte,  LifeSeq  and  PathoSeq  are  our  registered  trademarks.  ZooSeq,
LifeTools,  LifeArray,  LifeProt,  LifeExpress,  GeneAlbum  and  GEM  are  our
trademarks.  We also refer to trademarks of other corporations and organizations
in  this  document.

OVERVIEW

     Incyte  Pharmaceuticals, Inc. ("Incyte" and, together with its wholly owned
subsidiaries,  the  "Company")  designs,  develops  and  markets  genomic
information-based  products  and  services.  These products and services include
database products, genomic data management software tools, microarray-based gene
expression  services,  genomic  reagents,  and  related  services. The Company's
genomic  databases  integrate bioinformatics software with proprietary and, when
appropriate,  publicly available genetic information to create information-based
products  and  services  used  by pharmaceutical and biotechnology companies and
academic researchers to understand disease and to discover and develop drugs. In
the  first  quarter  of  2000,  the  Company's  Board  of  Directors approved an
amendment  to the Company's Certificate of Incorporation to change the Company's
name  to  Incyte  Genomics,  Inc.The amendment will be submitted for stockholder
approval  at  the  annual  meeting  to  be  held  in  June  2000.

Revenues  recognized  by the Company consist primarily of non-exclusive database
access  fees  related to database agreements. Revenues also include the sales of
genomic  screening products and services, fees for contract sequencing services,
sales  of  genomic data management software tools, and fees for microarray-based
gene  expression  services. The Company's database agreements provide for future
milestone  payments  and  royalties  from  the  sale  of  products  derived from
proprietary  information  obtained  through  the  databases.  There  can  be  no
assurance  that  any  database  subscriber  will  ever  generate  products  from
information  contained  within the databases and thus that the Company will ever
receive  additional  milestone  payments  or royalties. The Company's ability to
maintain  and  increase  revenues  depends  on  its ability to obtain additional
database  subscribers, to retain existing subscribers, to expand its product and
service offerings and to expand its customer base. The loss of revenues from any
individual  database  agreement,  if  terminated  or  not renewed, could have an
adverse  impact  on  the  Company's  results  of  operations, although it is not
anticipated  to  have  a  material  adverse  impact on the Company's business or
financial  conditions.

The  Company  intends  to  invest  in its sequencing, bioinformatics, expression
database  development,  SNP  discovery, and e-commerce programs in 2000 and as a
result expects to report a net loss at least through 2000. If the costs of these
programs  are  greater  than  anticipated,  or  if these programs take longer to
complete,  or if losses are incurred from strategic investments, the Company may
incur  losses  in  future  periods,  as  well.

The  Company  has  made  and  intends  to  continue  to  make  strategic  equity
investments  in,  and  acquisitions  of,  technologies  and  businesses that are
complementary  to  the  businesses  of the Company. As a result, the Company may
record  losses  or  expenses  related  to  the Company's proportionate ownership
interest  in  such  long-term  equity  investments,  record  charges  for  the
acquisition of in-process technologies, or record charges for the recognition of
the  impairment  in  the  value  of  the securities underlying such investments.

In  September  1997,  the  Company  formed  a  joint  venture,  diaDexus,  LLC
("diaDexus"),  with  SmithKline  Beecham  Corporation  ("SB") which will utilize
genomic  and  bioinformatics technologies in the discovery and commercialization
of molecular diagnostics. Through March 31, 2000, the Company and SB each held a
50  percent  equity interest in diaDexus. The investment was accounted for under
the  equity method, and the Company recorded its share of diaDexus' earnings and
losses  in  its  statement of operations. On April 6, 2000, diaDexus completed a
private  equity  financing.  Under  the  new  capital  structure,  the Company's
investment is below 20% and the Company no longer has significant influence over
diaDexus.  Accordingly,  the Company will account for its investment in diaDexus
under  the  cost  method  of  accounting  as  of  the  date  of  the  financing.

In  January  1998,  the  Company  announced a relationship relating to the joint
development  of  proteomics  data and related software with Oxford GlycoSciences
plc  ("OGS").  As  part  of  this  relationship, the Company made a $5.0 million
initial  equity  investment  and  a  follow-on  investment  in  April  1998  of
approximately  $0.8  million  as  part of the OGS initial public offering of its
ordinary  shares. As part of the collaborative agreement, the Company reimbursed
OGS $5.0 million in 1999 for services rendered and will reimburse OGS up to $5.0
million in 2000 to offset OGS' expenses for services rendered. The market prices
of  the  securities  of  the  companies  in which the Company invests are highly
volatile  and  therefore  subject  to declines in market value. The Company will
continue  to  evaluate  its  long-term  equity  investments  for impairment on a
quarterly  basis.

In  an  effort  to broaden its business, the Company is investing in a number of
new  areas,  including  molecular diagnostics, genome sequencing, SNP discovery,
proteomics,  microarray services and the sale of its products over the internet.
Given  that many of these address new markets, or involve untested technologies,
it is not known if any of them will generate revenues or if the revenues will be
sufficient  to  provide  an  adequate return on the investment. Depending on the
investment  required  and  the  timing  of  such investments, expenses or losses
related  to  these  investments  could  adversely  affect  operating  results.

The Company has incurred and could continue to incur substantial expenses in its
defense  of the lawsuits filed in January and September 1998 by Affymetrix, Inc.
("Affymetrix")  alleging  patent  infringement by Synteni and Incyte. Affymetrix
seeks  a  preliminary injunction enjoining Incyte and Synteni from using certain
microarray technology in a manner alleged to infringe an Affymetrix patent and a
permanent  injunction  enjoining Incyte and Synteni from further infringement of
certain  Affymetrix  patents.  In  addition,  Affymetrix  seeks  damages, costs,
attorneys'  fees and interest. Affymetrix further requests that any such damages
be  trebled  on  its  allegation  of willful infringement by Incyte and Synteni.
Incyte  and  Synteni believe they have meritorious defenses and intend to defend
these  suits  vigorously.  However,  there  can  be no assurance that Incyte and
Synteni  will  be  successful  in  the defense of these suits. At this time, the
Company  cannot  reasonably  estimate  the possible range of any loss related to
these suits due to uncertainty regarding the ultimate outcome. Regardless of the
outcome,  this  litigation has resulted and is expected to continue to result in
substantial  expenses  and  diversion of the efforts of management and technical
personnel.  Any future litigation could result in similar expenses and diversion
of  efforts.  Further,  there  can  be no assurance that any license that may be
required  as  a  result  of  these  suits  or  the outcome thereof would be made
available  on  commercially  acceptable  terms,  if  at  all.

RESULTS  OF  OPERATIONS

     Net loss and diluted net loss per share were $8.2 million and $0.27 for the
three months ended March 31, 2000, respectively, as compared to $1.9 million and
$0.07  in  the  same period a year ago, respectively. Diluted net loss per share
for  the  three  months  ended  March  31, 2000 was impacted by a private equity
offering  of  2,000,000  shares  of  common  stock  in  February  2000.

     Revenues  for  the  three  months  ended  March 31, 2000 increased to $40.8
million compared to $37.6 million for the corresponding period in 1999. Revenues
resulted  primarily  from  database  and  related products and, to a much lesser
extent,  from the Company's custom genomics product line, which includes genomic
screening  products and services, gene expression services and custom sequencing
services. The increase in revenues was primarily attributed to revenues from new
products  such  as  expression  databases  and  in  silico  Single  Nucleotide
Polymorphism  ("isSNP")  product  as  well  as  increased  revenues  from custom
genomics  products.

     Total  costs  and  expenses  for  the  three  months  ended  March 31, 2000
increased  to  $56.2  million  compared  to  $39.6 million for the corresponding
period  in  1999.  Total  costs  and  expenses  are  expected to increase in the
foreseeable  future  due  to  the continued investment in the development of new
products  and  services,  and  in  the  expansion of the Company's customer base

     Research and development expenses for the three months ended March 31, 2000
increased  to  $41.3  million  compared  to  $31.2 million for the corresponding
period  in  1999.  The  increase  in  research and development expenses resulted
primarily  from  an increase in bioinformatics and software development efforts,
gene  mapping  and  SNP  discovery  efforts,  microarray  production,  and  the
development of e-commerce products. The Company expects research and development
spending  to  increase as the Company continues to pursue the development of new
database  products  and  services,  expansion  of  existing  database  products,
increases in sequencing, bioinformatics, expression database development and SNP
discovery  operations,  development  of  e-commerce  products  and  services and
investments  in  new  technologies.

     Selling,  general  and  administrative  expenses for the three months ended
March  31,  2000  increased  to  $14.8  million compared to $8.4 million for the
corresponding  period  in  1999.  The  increase  in  selling,  general  and
administrative  expenses  resulted  primarily  from  the growth in the Company's
sales  and  marketing  function,  including  its branding efforts, and increased
personnel  to  support  the  growing complexity of the Company's operations. The
Company's  operations  were  also  impacted  by  legal  expenses from the patent
infringement lawsuits filed by Affymetrix of approximately $1.4 million and $2.1
million  in  the  three  months ended March 31, 2000 and 1999, respectively. The
Company  expects that selling, general and administrative expenses will increase
throughout 2000 due to continued growth in marketing, sales and customer support
functions,  legal  expenses  related  to  the  Company's  defense  of the patent
infringement  lawsuit  filed by Affymetrix and increases in personnel to support
the  Company's  growing  complexity.

     Interest  and  other  income, net for the three months ended March 31, 2000
increased  to  $10.4  million  from $1.6 million for the corresponding period in
1999.  This  increase  was  primarily  a  result of a $5.4 million gain from the
exercise  and  sale  of a warrant in a long-term strategic investment as well as
increased  interest  income  due  to  higher  cash  balances  from the Company's
convertible  subordinated  note  and  private equity offerings in February 2000.

     Interest  expense  for  the  three months ended March 31, 2000 increased to
$1.9  million  from  $0.1  million  for  the  corresponding  period in 1999. The
increase  was  due  to  the  interest  expense  associated  with  the  Company's
convertible  subordinated  notes  issued  in  February  2000.

     Losses  from  joint  venture  were  $1.3 million for the three months ended
March  31,  2000  compared to $1.4 million for the corresponding period in 1999.
The  loss  represents  the  Company's share of diaDexus' losses from operations.
Beginning  on  April  6,  2000,  the  Company will account for its investment in
diaDexus  under  the  cost  method  of  accounting  and therefore will no longer
reflect  diaDexus'  losses  in  the  Company's  statement  of  operations.

     Due  to  the Company's expected loss in 2000, the Company expects a minimal
effective  annual  income  tax  rate, which is consistent with the corresponding
period  a  year  ago.

LIQUIDITY  AND  CAPITAL  RESOURCES

     As  of  March  31,  2000,  the  Company  had  $692.2  million in cash, cash
equivalents  and marketable securities, compared to $66.9 million as of December
31,  1999.  The  Company  has  classified  all  of  its marketable securities as
short-term,  as  the  Company  may  choose not to hold its marketable securities
until  maturity  in  order  to  take  advantage  of favorable market conditions.
Available  cash is invested in accordance with the Company's investment policy's
primary  objectives  of  liquidity,  safety  of  principal  and  diversity  of
investments.

     Net  cash  provided by operating activities was $16.4 million for the three
months  ended  March 31, 2000, as compared to $31.7 million for the three months
ended March 31, 1999. The decrease was primarily due to the higher net loss, net
of non-cash charges in 2000 as compared to 1999, increase in prepaid expenses in
2000  and  the  lower increase in deferred revenues in 2000 as compared to 1999.
These  changes  were  partially  offset  by  the  larger  decrease  in  accounts
receivable  in  2000 as compared to 1999 and the increase in accounts payable in
2000.  Net  cash  generated  by operating activities may in the future fluctuate
significantly  from quarter to quarter due to the timing of large prepayments by
database  collaborators.

          In  February  2000,  in  a  private placement, the Company issued $200
million  of  convertible  subordinated  notes, which resulted in net proceeds of
approximately  $196.8  million.  The  notes  bear  interest  at  5.5%,  payable
semi-annually  on  March  1  and  September 1, and are due February 1, 2007. The
notes  are  subordinated  to  senior  indebtedness, as defined. The notes can be
converted  at the option of the holder at an initial conversion price of $134.84
per  share,  subject to adjustment. The Company may redeem the notes at any time
before  February  7,  2003,  only  if  the  Company's  stock exceeds 150% of the
conversion price for 20 trading days in a period of 30 consecutive trading days.
On  or  after  February  7,  2003  the  Company may redeem the notes at specific
prices. Holders may require the Company to repurchase the notes upon a change in
control,  as  defined.

          In February 2000, in a private placement, the Company issued 2,000,000
of  its  common stock at a price of $211.00 per share, resulting in net proceeds
of  $398.3  million.

     The  Company's  investing  activities,  other  than  purchases,  sales  and
maturities  of marketable securities, have consisted of capital expenditures and
long-term investments. Capital expenditures for the three months ended March 31,
2000  were $12.5 million as compared to $8.9 million in the same period in 1999,
primarily  due  to  the  expansion  of  the  Company's  facilities.  The Company
generated  net proceeds of $5.4 million on the exercise of a warrant and sale of
the  underlying common shares in one of its long term strategic investments. Net
cash used by investing activities may in the future fluctuate significantly from
quarter  to  quarter  due to the timing of investments in and sales of strategic
equity  investments,  capital  expenditures  and maturity/sales and purchases of
marketable  securities.

     Net  cash provided by financing activities was $616.3 million for the three
months  ended  March  31, 2000 as compared to $0.01 million for the three months
ended March 31, 1999. The 2000 activity included the issuance of common stock in
a  private  equity offering resulting in net proceeds of $398.3 million, the net
proceeds  from  the  issuance  of  5.5% Convertible Subordinated Notes of $196.8
million,  and  the proceeds from the exercise of employee stock options of $21.0
million.

     The  Company  expects its cash requirements to continue to increase in 2000
as  it:  invests  in  its  sequencing,  bioinformatics,  expression  database
development,  and  SNP  discovery  programs;  invests in data-processing-related
computer  hardware  to  support  its  existing  and new database products and to
enable  the  on-line  delivery  of  those  products; continues to seek access to
technologies  through  investments,  research and development alliances, license
agreements  and/or  acquisitions;  makes strategic investments; and continues to
make  improvements  in  existing  facilities.

     Based  upon  its  current  plans,  the  Company  believes that its existing
resources  will  be  adequate to satisfy its capital needs for at least the next
twelve  months.  The  Company's  cash  requirements  depend on numerous factors,
including the ability of the Company to attract and retain collaborators for its
databases  and  other  products  and  services;  expenditures in connection with
alliances,  license  agreements  and  acquisitions  of  and  investments  in
complementary  technologies  and  businesses; competing technological and market
developments;  the  cost  of filing, prosecuting, defending and enforcing patent
claims  and  other  intellectual  property  rights;  the  purchase of additional
capital equipment, including capital equipment necessary to ensure the Company's
sequencing  and  microarray  operations remain competitive; capital expenditures
required  to  expand  the  Company's  facilities;  and costs associated with the
integration  of new operations assumed through mergers and acquisitions. Changes
in  the  Company's research and development plans or other changes affecting the
Company's  operating  expenses may result in changes in the timing and amount of
expenditures  of  the  Company's  capital  resources.

EURO  CONVERSION

     A  single  currency  called the euro was introduced in Europe on January 1,
1999.  Eleven  of  the  fifteen member countries of the European Union agreed to
adopt  the  euro  as  their common legal currency on that date. Fixed conversion
rates  between  these  participating countries' existing currencies (the "legacy
currencies")  and  the  euro  were  established  as  of  that  date.  The legacy
currencies  are  scheduled  to  remain legal tender as denominations of the euro
until  at  least  January  1, 2002, but not later than July 1, 2002. During this
transition  period,  parties  may settle transactions using either the euro or a
participating  country's legal currency. The Company will evaluate the impact of
the  euro  conversion on its computer and financial systems, business processes,
market  risk, and price competition. The Company does not expect this conversion
to  have  a  material impact on its results of operations, financial position or
cash  flows.


FACTORS  THAT  MAY  AFFECT  RESULTS

     The  risks  and  uncertainties described below are not the only ones facing
our  company.  Additional  risks  and uncertainties not presently known to us or
that  we  currently  deem  immaterial  may  also impair our business operations.

     If  any  of  the  following  risks  actually occur, our business, financial
condition  and results of operations could be materially and adversely affected.

WE  HAVE HAD ONLY LIMITED PERIODS OF PROFITABILITY AND WE EXPECT TO INCUR LOSSES
IN  THE  FUTURE,  WHICH  MAY  PREVENT  US  FROM  RETURNING  TO  PROFITABILITY

          We  had  net  losses  from  inception  in 1991 through 1996, and again
incurred  net  losses  in  1999  and  2000.  Because  of those losses, we had an
accumulated deficit of $63.3 million as of March 31, 2000. We intend to continue
to  make  significant  investments  in  sequencing,  bioinformatics,  expression
database  development,  single  nucleotide  polymorphism,  or SNP, discovery and
development  of e-commerce products. As a result, we expect to report a net loss
for  the  year  ending  December  31,  2000.  We may report net losses in future
periods  as  well.  We  expect that our expenditures may continue to increase in
2000  due  in  part  to  our  continued investment in new product and technology
development,  including  the  continuation  of  our  genomic  sequencing,
bioinformatics,  expression  database  development,  SNP-discovery  programs,
e-commerce  initiative,  obligations  under  existing  and  future  research and
development  alliances,  and  our  increasing investment in marketing, sales and
customer  service.  Our  profitability  depends  on  our ability to increase our
revenues:

          TO  GENERATE  SIGNIFICANT REVENUES, WE MUST OBTAIN ADDITIONAL DATABASE
COLLABORATORS  AND  RETAIN EXISTING COLLABORATORS. While we had over 20 database
agreements  as  of March 31, 2000, we may be unable to enter into any additional
agreements.  Also,  our  database  collaborators  may  choose not to renew their
agreements  upon  expiration.  In  1999,  one  of  our  LifeSeq  Gold  database
collaborators  did  not  renew  its subscription. Our database revenues are also
affected  by  the extent to which existing collaborators expand their agreements
with  us  to  include  our new database products and to the extent that existing
collaborators  reduce  the  number  of  products  or  services  for  which  they
subscribe.  Some  of  our  database  agreements  require  us to meet performance
obligations.  A database collaborator can terminate its agreement before the end
of  its  scheduled  term  if we breach the agreement and fail to cure the breach
within  a  specified  period.

          OUR  REVENUES  AND  PROFITABILITY  WILL  ALSO DEPEND ON OUR ABILITY TO
GENERATE  PROFITS FROM EXPRESSION DATABASES AND MICROARRAY SERVICES. We acquired
Synteni,  Inc.  in  January  1998 to provide microarray services and to generate
information  for  expression  databases.  The  contribution  of  our  microarray
operations  to  our  operating results will depend on whether we can continue to
obtain  high-volume  customers for microarray services and expression databases,
whether  we  can  continue  to  increase our microarray production capacity in a
timely  manner and with consistent volumes and quality, and the costs associated
with  increasing  our  microarray  production  capacity.

          WE  DO  NOT  EXPECT  MILESTONE  OR  ROYALTY  PAYMENTS TO SUBSTANTIALLY
CONTRIBUTE  TO REVENUES FOR SEVERAL YEARS. Part of our strategy is to license to
database  collaborators  our know how and patent rights associated with the gene
sequences  and  related information in our proprietary databases, for use in the
discovery  and  development  of  potential  pharmaceutical,  diagnostic or other
products.  Any  potential  product  that  is  the subject of such a license will
require  several  years  of further development, clinical testing and regulatory
approval  before  commercialization.

OUR OPERATING RESULTS ARE UNPREDICTABLE AND MAY ADVERSELY IMPACT OUR STOCK PRICE

          Our  operating  results  are  unpredictable  and  may  fluctuate
significantly  from  period  to  period  due to a variety of factors, including:

- -     changes  in  the  demand  for  our  products  and  services;

- -     the  introduction  of  competitive databases or services, including public
domain  databases;

- -     the  pricing  of  access  to  our  databases;

- -     the  nature, pricing and timing of other products and services provided to
our  collaborators;

- -     changes  in  the research and development budgets of our collaborators and
potential  collaborators;

- -     depreciation  expense  from  capital  expenditures;

- -     acquisition,  licensing  and  other  costs related to the expansion of our
operations,  including  operating  losses  of  acquired  businesses;

- -     losses  and  expenses  related  to  our  investments in joint ventures and
businesses;

- -     payments  of milestones, license fees or research payments under the terms
of  our  increasing  number  of  external  alliances;  and

- -     expenses  related to, and the results of, litigation and other proceedings
relating  to  intellectual  property  rights  (including  the  lawsuits filed by
Affymetrix,  Inc.  described  below).

     In  particular,  revenues  from  our  database  business  are unpredictable
because:

- -     the  timing  of  our  database  installations  is  determined  by  our
collaborators;

- -     the  sales  cycle  for  our  database  products  is  lengthy;  and

- -     the  time  required  to  complete  custom  orders  can vary significantly.

          We  expect  our expression databases to represent an increasing amount
of our revenues. These revenues may, however, be affected by developments in the
Affymetrix litigation, which may cause potential customers to postpone or change
their  decision  to  use  our  microarray services or to purchase our expression
databases

          We  are  investing  in  a  number  of  new areas to try to broaden our
business.  These  areas  include  sequencing,  bioinformatics,  gene  expression
databases, SNP discovery, molecular diagnostics, proteomics, or the large scale,
high-throughput  analysis  of protein expression, and the online delivery of our
database  and  software  products.  Because many of these address new markets or
involve  untested technologies, they may not generate any revenues or provide an
adequate  return  on  our  investment.  In these cases, we may have to recognize
expenses  or  losses.

          We  have  significant  fixed  expenses,  due  in  part  to our need to
continue to invest in product development and extensive support for our database
collaborators.  We  may  be  unable  to adjust our expenditures if revenues in a
particular  period  fail  to meet our expectations, which would adversely affect
our  operating  results  for  that period. Forecasting operating and integration
expenses for acquired businesses may be particularly difficult, especially where
the  acquired  business  focuses on technologies that do not have an established
market.

          We  believe that period-to-period comparisons of our financial results
will  not necessarily be meaningful. You should not rely on these comparisons as
an  indication of our future performance. If our operating results in any future
period  fall  below  the  expectations of securities analysts and investors, our
stock  price  will  likely  fall,  possibly  by  a  significant  amount.

          WE  EXPERIENCE  INTENSE COMPETITION AND RAPID TECHNOLOGICAL CHANGE AND
IF  WE  DO  NOT  COMPETE  EFFECTIVELY  OUR  REVENUES  MAY  DECLINE

          GENOMIC  BUSINESSES  ARE  INTENSELY  COMPETITIVE.  The  human  genome
contains  a  finite  number  of  genes.  Our  competitors  may seek to identify,
sequence  and  determine  the  biological function of numerous genes in order to
obtain  a proprietary position with respect to new genes. A number of companies,
other  institutions  and  government-financed  entities  are  engaged  in  gene
sequencing,  gene  discovery,  gene expression analysis, positional cloning, the
study  of genetic variation, and other genomic service businesses. Many of these
companies,  institutions and entities have greater financial and human resources
than  we  do.

          Some  of  our  competitors  have  developed  databases containing gene
sequence,  gene  expression,  genetic variation or other genomic information and
are  marketing  or  plan  to  market  their  data  to  pharmaceutical companies.
Additional  competitors  may  attempt  to  establish  databases  containing this
information  in  the  future.  We  expect  that competition in our industry will
continue  to  intensify.  Several  large  pharmaceutical companies have formed a
consortium to create a SNPs database and to make all of the information publicly
available.  The formation of this consortium could delay or reduce the potential
revenues  related  to  our  SNP-related  business.

          PATENT  POSITIONS  OR  PUBLIC  DISCLOSURES MAY REDUCE THE VALUE OF OUR
DATABASES.  Competitors may discover and establish patent positions with respect
to  gene  sequences  in our databases. Further, certain entities engaged in gene
sequencing have made the results of their sequencing efforts publicly available.
In April 2000, the Celera Genomics Group of PE Corporation announced that it has
completed  the  sequencing  phase  of  one person's genome and will now begin to
assemble  the  sequenced fragments of the genome into their proper order. Celera
has  announced  that  it  has  filed  a  provisional patent application on newly
discovered  partial  genes and stated its intention to file full applications on
medically  important discoveries. The Human Genome Project, which is coordinated
by  the  U.S.  Department  of  Energy and the National Institutes of Health, has
announced that a consortium of laboratories associated with the Project predicts
that  they  will produce at least 90% of the human genome sequence in a "working
draft  form"  by the spring of 2000 and that they intend to make the information
publicly  available.  The  public  availability  of  gene sequences or resulting
patent  positions covering substantial portions of the human genome or microbial
or  plant  genomes  could  reduce  the  potential  value of our databases to our
collaborators.  It  could  also impair our ability to realize royalties or other
revenue  from  any  commercialized  products  based on this genetic information.

          COMPETITORS  MAY  DEVELOP  SUPERIOR  TECHNOLOGY.  The  gene sequencing
machines  used  in  our  computer-aided  sequencing  operations are commercially
available  and  are  being used by at least one competitor. In addition, some of
our  competitors and potential competitors are developing proprietary sequencing
technologies  that  may  be  more  advanced  than  ours.

          In  addition,  a  number of companies are pursuing alternative methods
for  generating  gene expression information, including microarray technologies.
These  advanced  sequencing  or  gene  expression  technologies  may  not  be
commercially  available for us to purchase or license on reasonable terms, if at
all.  At least one other company currently offers microarray-based services that
might  be  competitive  with  ours.

          Our SNP discovery platform represents a modification of a process that
is  in  the  public  domain.  We  are  seeking  patent  protection  for  these
improvements,  but have not yet received any patents. Other companies could make
similar  or superior improvements to this process without infringing our rights,
and  we  may  not  have access to those improvements. The discovery of SNPs is a
competitive  area. Other companies may develop or obtain access to different SNP
discovery  platforms,  to  which  we  may  not  have  access,  that may make our
technology  obsolete.

          We  also  face  competition  from  providers  of software. A number of
companies  have  announced their intent to develop and market software to assist
pharmaceutical  companies  and  academic  researchers  in managing and analyzing
their  own  genomic  data  and  publicly  available  data.

          WE  MUST CONTINUE TO INVEST IN NEW TECHNOLOGIES. The genomics industry
is characterized by extensive research efforts, resulting in rapid technological
progress.  To  remain  competitive,  we  must  continue to expand our databases,
improve  our  software,  and  invest  in  new technologies. New developments are
expected  to  continue,  and  discoveries  by others may render our services and
potential  products  noncompetitive.

WE ARE INVOLVED IN PATENT LITIGATION, WHICH IF NOT RESOLVED FAVORABLY COULD HARM
OUR  BUSINESS

          In  January 1998, Affymetrix filed a lawsuit in federal court alleging
infringement  of  U.S.  patent  number 5,445,934 by both Synteni and Incyte. The
complaint  alleges  that  the  '934  patent  has been infringed by Synteni's and
Incyte's  making,  using,  selling,  importing, distributing or offering to sell
high density arrays in the United States and that this infringement was willful.
Affymetrix  seeks  a  permanent  injunction  enjoining  Synteni  and Incyte from
further  infringement  of  the  '934 patent and seeks damages, costs, attorneys'
fees  and  interest.  Affymetrix also requests triple damages based on allegedly
willful  infringement.

          In  September  1998,  Affymetrix  filed an additional lawsuit alleging
infringement  of  U.S.  patent  numbers  5,744,305  and 5,800,992 by Synteni and
Incyte.  The  complaint  alleges  that  the  '305  patent  has been infringed by
Synteni's  and  Incyte's  making,  using,  selling,  importing,  distributing or
offering  to sell high density arrays in the United States. It also alleges that
the  '992  patent  has  been  infringed by the use of Synteni's and Incyte's GEM
microarray  technology  to  conduct  gene  expression monitoring using two-color
labeling  and  that  this  infringement  was  willful.  Affymetrix  had sought a
preliminary  injunction  enjoining  Synteni and Incyte from using GEM microarray
technology  to  conduct this kind of gene expression monitoring, and a permanent
injunction  enjoining  Synteni  and  Incyte from further infringing the '305 and
'992  patents.

          The  lawsuits were initially filed in the United States District Court
for  the  District  of  Delaware.  In  November 1998, the court granted Incyte's
motion  to  transfer  the  suits  to  the  United  States District Court for the
Northern  District  of  California.  Affymetrix's  request  for  a  preliminary
injunction  was  denied in April 1999. As a result of the assignment of the case
to  a  new  judge, all scheduled trial and pretrial dates have been vacated. The
court  is  expected  to  set  a  new  schedule  in  July  2000.

          In April 1999, the Board of Patent Appeals and Interferences of United
States Patent and Trademark Office declared interferences between pending patent
applications  licensed  exclusively  to  us  and  the  Affymetrix  '305 and '992
patents.  An  interference  proceeding  is  invoked  by the Patent and Trademark
Office  when more than one patent applicant claims the same invention. The Board
of  Patent  Appeals  and  Interferences  evaluates all relevant facts, including
those  bearing on first to invent, validity, enablement and scope of claims, and
then  makes  a  determination as to who, if anyone, is entitled to the patent on
the  disputed  invention.  In  September  1999,  the Board of Patent Appeals and
Interferences determined that Incyte had not met its prima facie case, and ruled
that  patents  licensed  by Incyte and Synteni from Stanford University were not
entitled to priority over corresponding claims in the two Affymetrix patents. We
are  seeking de novo review of the board decisions in the United States district
court  for  the  Northern  District  of  California.

          We  believe  we  have  meritorious defenses and intend to defend these
suits  vigorously.  However,  our  defense may be unsuccessful. At this time, we
cannot  reasonably  estimate the possible range of any loss resulting from these
suits due to uncertainty about the ultimate outcome. We have spent and expect to
continue  to  spend  a  significant  amount of money and management time on this
litigation.  Also,  if  we are required to license any technology as a result of
these  suits,  we  do  not know whether we will be able to do so on commercially
acceptable  terms,  if  at  all.

WE  SPEND  A  SUBSTANTIAL  AMOUNT  OF  MONEY ON NEW AND UNCERTAIN BUSINESSES AND
DEMAND  FOR  OUR  PRODUCTS  AND SERVICES MAY BE INSUFFICIENT TO COVER OUR COSTS,
WHICH  COULD  IMPACT  OUR  PROFITABILITY

          There  is  little  precedent  for  microarray-based  gene  expression
database  or  service  businesses  or  the  use  of  SNP-based genetic variation
information.  We  and  our  potential  customers  are  in  the  early  stages of
evaluating  the usefulness of the information generated by these businesses, and
market demand for this information is uncertain. Our collaborators and potential
collaborators  may  determine  that  our  databases,  software  tools  and
microarray-related  services are not useful or cost-effective. Due to the nature
and  price  of some of the products and services we offer, only a limited number
of  companies are potential collaborators for those products and services. If we
do  not develop these new products and services in time to meet market demand or
if  there  is insufficient demand for these products and services, we may not be
able  to  cover  our  costs  of developing these products and services or earn a
sufficient  return  on  our  investment.

     Additional  factors  that  may  affect demand for our products and services
include:

- -     the  extent  to  which  pharmaceutical and biotechnology companies conduct
these  activities  in-house  or  through  industry  consortia;

- -     the  emergence  of  competitors  offering  similar services at competitive
prices;

- -     the  extent to which the information in our databases is made public or is
covered  by  others'  patents;

- -     our  ability  to establish and enforce proprietary rights to our products;

- -     regulatory  developments  or changes in public perceptions relating to the
use  of  genetic information and the diagnosis and treatment of disease based on
genetic  information;  and

- -     technological  innovations  that  are  more advanced than the technologies
that  we  have  developed  or  that  are  available  to  us.

     Many  of  these  factors  are  beyond  our  control.

OUR  NEW  PROGRAMS RELATING TO THE ROLE OF GENETIC VARIATION IN DISEASE AND DRUG
RESPONSE  MAY  NEVER  GENERATE  SIGNIFICANT  REVENUES  OR  PROFITABLE OPERATIONS

          We  recently  began  to  focus  part  of  our  business  on developing
information-based  products and services to assist pharmaceutical companies in a
new  and  unproven area: the identification and correlation of genetic variation
to  disease  and  drug  response.  We will incur significant costs over the next
several  years  in  expanding  our  research and development in this area. These
activities  may  never  generate  significant revenues or profitable operations.

          This  new  aspect  of  our  business  will  focus on SNPs, one type of
genetic  variation.  The  role of SNPs in disease and drug response is not fully
understood, and relatively few, if any, therapeutic or diagnostic products based
on  SNPs  have  been developed and commercialized. Among other things, demand in
this  area  may  be  adversely affected by ethical and social concerns about the
confidentiality  of  patient-specific  genetic  information and about the use of
genetic  testing  for  diagnostic  purposes.

          Except  for  a  few anecdotal examples, we have no precedent that SNPs
have any correlation to diseases or a patient's response to a particular drug or
class  of  drug.  Identifying  statistically  significant  correlations  is
time-consuming  and could involve the collection and screening of a large number
of  patient  samples.  We do not know if the SNPs we have discovered to date are
suitable  for  these correlation studies. Nor do we currently have access to the
patient samples needed or technology allowing us to rapidly and cost-effectively
identify  pre-determined  SNPs  in  large  numbers  of  patients.

          Most SNPs may occur too infrequently to warrant their use in analyzing
patients'  genetic  variation.  We  may  have trouble identifying SNPs that both
correlate with diseases or drug responses and occur frequently enough to justify
their  use  by  pharmaceutical  companies.

          Our  success  will  also  depend  upon our ability to develop, use and
enhance  new  and  relatively  unproven  technologies.  Our  strategy  of  using
high-throughput mutation detection processes and sequencing to identify SNPs and
genes  rapidly  is  unproven.  Among  other  things, we will need to continue to
improve  the  throughput  of our SNP-discovery technology. We may not be able to
achieve  these  necessary improvements, and other factors may impair our ability
to  develop  our  SNP-related  products and services in time to be competitively
available.

OUR  STRATEGIC  INVESTMENTS  MAY  RESULT  IN  LOSSES  AND  OTHER ADVERSE EFFECTS

          We  make  strategic  investments  in joint ventures or businesses that
complement  our  business.  These  investments  may:

- -     often  be made in securities lacking a public trading market or subject to
trading  restrictions,  either  of  which  increases  our  risk  and reduces the
liquidity  of  our  investment;

- -     require  us  to  record  losses  and  expenses  related  to  our ownership
interest;

- -     require  us  to  record  charges  related to the acquisition of in-process
technologies or for the impairment in the value of the securities underlying our
investment;  and

- -     require  us  to  invest  greater  amounts  than  anticipated  or to devote
substantial  management  time  to  the  management  of  research and development
relationships  and  joint  ventures.

          The  market  values  of  many  of  these  investments  fluctuate
significantly.  We  evaluate  our long-term equity investments for impairment of
their  values on a quarterly basis. Impairment could result in future charges to
our  earnings.  These  losses  and  expenses  may  exceed  the  amounts  that we
anticipated.

OUR  SALES  CYCLE  IS  LENGTHY  AND THERE IS NO GUARANTEE THAT A SUBSCRIPTION OR
SERVICES  AGREEMENT  WILL  RESULT

          Our  ability  to  obtain  new  subscribers for our databases, software
tools  and  microarray  and other services depends upon prospective subscribers'
perceptions  that  our  products and services can help accelerate drug discovery
efforts.  Our  database  sales  cycle  is  typically  lengthy because we need to
educate  our  potential  subscribers  and  sell  the  benefits  of our tools and
services  to  a variety of constituencies within potential subscriber companies.
In  addition,  each  database  subscription  and  microarray  services agreement
involves  the  negotiation  of unique terms. We may expend substantial funds and
management  effort  with  no assurance that a subscription or services agreement
will result. Actual and proposed consolidations of pharmaceutical companies have
affected  the  timing  and  progress of our sales efforts. We expect that future
proposed  consolidations  will  have  similar  effects.

PATENTS  AND  OTHER  PROPRIETARY  RIGHTS  PROVIDE  UNCERTAIN  PROTECTION  OF OUR
PROPRIETARY  INFORMATION  AND  OUR  INABILITY  TO  PROTECT  A  PATENT  OR  OTHER
PROPRIETARY  RIGHT  MAY  IMPACT  OUR  BUSINESS  AND  OPERATING  RESULTS

          WE  MAY  BE  UNABLE  TO PROTECT OUR PROPRIETARY INFORMATION, WHICH MAY
RESULT  IN  UNAUTHORIZED USE AND A LOSS OF REVENUE. Our business and competitive
position depend upon our ability to protect our proprietary database information
and  software  technology,  but  our  strategy  of  obtaining  and  protecting
proprietary  rights  in  pharmaceutically-relevant  genes  and SNPs is untested.
Despite  our  efforts  to  protect this information and technology, unauthorized
parties may attempt to obtain and use information that we regard as proprietary.
Although our database subscription agreements require our subscribers to control
access to our databases, policing unauthorized use of our databases and software
may  be  difficult.

          We  pursue  a policy of having our employees, consultants and advisors
execute proprietary information and invention agreements when they begin working
for  us. However, these agreements may not provide meaningful protection for our
trade  secrets or other proprietary information in the event of unauthorized use
or  disclosure.

     Our  means of protecting our proprietary rights may not be adequate and our
competitors  may:

- -     independently develop substantially equivalent proprietary information and
techniques;

- -     otherwise  gain  access  to  our  proprietary  information;  or

- -     design  around  patents  issued  to us or our other intellectual property.

          OUR  PATENT  APPLICATIONS MAY CONFLICT WITH OTHERS. Our current policy
is  to  file  patent applications on what we believe to be novel full-length and
partial  gene  sequences  obtained  through our gene sequencing efforts. We have
filed  U.S.  patent  applications  in which we have claimed certain partial gene
sequences.  We  have  also  applied  for patents in the U.S. and other countries
claiming  full-length  gene sequences associated with cells and tissues involved
in  our  gene  sequencing  program.  We  hold a number of issued U.S. patents on
full-length  genes  and  one  issued  U.S. patent claiming multiple partial gene
sequences.  A number of entities make certain gene sequences publicly available,
which  may  adversely  affect  our  ability  to  obtain  patents on those genes.

          We  believe  that some of our patent applications claim genes that may
also  be claimed in patent applications filed by others. In some or all of these
applications, a determination of priority of inventorship may need to be decided
in  an  interference  before  the  United  States  Patent  and Trademark Office.

          ENFORCEMENT OF GENE PATENTS IS UNCERTAIN AND GENE PATENTS MAY BE FOUND
UNENFORCEABLE, RESULTING IN A LOSS OF COMPETITIVE BENEFIT. One of our strategies
is  to  obtain  proprietary rights in pharmaceutically-relevant genes (including
partial  gene  sequences)  and SNPs. While the USPTO has issued patents covering
full-length  genes,  partial  gene sequences and SNPs, we do not know whether or
how  courts  may  enforce  those  patents, if that becomes necessary. If a court
finds these types of inventions to be unpatentable, or interprets them narrowly,
the  benefits  of  our  strategy  may  not  materialize.

          WE MAY DECIDE TO ABANDON PATENT APPLICATIONS, WHICH COULD DIMINISH THE
VALUE  OF  OUR  PATENT PORTFOLIO AND POSSIBLY OUR FUTURE REVENUES. The USPTO has
had  a  substantial  backlog  of biotechnology patent applications, particularly
those claiming gene sequences. In 1996, the USPTO issued guidelines limiting the
number  of  partial  gene  sequences that can be examined within a single patent
application. Many of our patent applications contain more partial sequences than
the  maximum  number allowed under these guidelines. Due to the resources needed
to  comply with the guidelines, we may decide to abandon patent applications for
some  of  our  partial  gene  sequences.

          Because  filing  large  numbers of patent applications and maintaining
issued  patents  can  be  very  costly,  we  may  choose  not  to  pursue  every
application.  If  we  do not pursue patent protection for all of our full-length
and  partial  gene  sequences,  the value of our intellectual property portfolio
could  be  diminished.  Because  of the possible delay in obtaining allowance of
some  of  our patent applications, and the secrecy of patent applications, we do
not  know  if  other  applications  having  priority  over ours have been filed.

          WE  MAY  NEED TO REFILE SOME OF OUR PATENT APPLICATIONS AND THE PERIOD
OF PATENT PROTECTION HAS BEEN SHORTENED, WHICH MAY AFFECT OUR POTENTIAL REVENUES
AND  PROFITS.  The  value  of our patents depends in part on their duration. The
U.S.  patent  laws  were amended in 1995 to change the term of patent protection
from  17  years  from  patent  issuance  to 20 years from the earliest effective
filing date of the application. Because the average time from filing to issuance
of  biotechnology  applications  is at least one year and may be more than three
years  depending  on  the  subject matter, a 20-year patent term from the filing
date  may result in substantially shorter patent protection, which may adversely
affect  our  rights  under  any  patents  that  we obtain. We may need to refile
applications  claiming large numbers of gene sequences and, in these situations,
the  patent  term  will  be  measured  from  the  date  of the earliest priority
application.  This  would  shorten  our  period  of  patent  exclusivity.

          INTERNATIONAL  PATENT  PROTECTION  IS  PARTICULARLY  UNCERTAIN,  AND
OPPOSITION  PROCEEDINGS IN FOREIGN COUNTRIES MAY BE COSTLY AND DIVERT MANAGEMENT
RESOURCES.  Biotechnology  patent  law  outside  the  United States is even more
uncertain  than  in  the  United  States  and is currently undergoing review and
revision  in many countries. Further, the laws of some foreign countries may not
protect our intellectual property rights to the same extent as U.S. laws. We may
participate  in  opposition  proceedings to determine the validity of our or our
competitors'  foreign  patents,  which  could  result  in  substantial costs and
diversion  of  our  efforts.

WE MAY BE SUBJECT TO ADDITIONAL LITIGATION AND INFRINGEMENT CLAIMS THAT COULD BE
COSTLY  AND  DISRUPT  OUR  BUSINESS

          The  technology that we use to develop our products, and those that we
incorporate  in  our  products,  may be subject to claims that they infringe the
patents or proprietary rights of others. The risk of this occurring will tend to
increase  as  the  genomics,  biotechnology and software industries expand, more
patents  are  issued  and other companies attempt to discover genes and SNPs and
engage  in  other  genomic-related  businesses.

          As  is typical in the genomics, biotechnology and software industries,
we have received, and we will probably receive in the future, notices from third
parties  alleging patent infringement. We believe that we are not infringing the
patent rights of any such third party. Except for Affymetrix, no third party has
filed  a  patent  lawsuit  against  us.

          We  may,  however,  be  involved  in  future  lawsuits alleging patent
infringement  or  other  intellectual  property  rights violations. In addition,
litigation  may  be  necessary  to:

- -     assert  claims  of  infringement;

- -     enforce  our  patents;

- -     protect  our  trade  secrets  or  know-how;  or

- -     determine the enforceability, scope and validity of the proprietary rights
of  others.

          We  may  be  unsuccessful  in  defending  or  pursuing these lawsuits.
Regardless  of  the  outcome,  litigation  can  be  very  costly  and can divert
management's  efforts.  An  adverse  determination may subject us to significant
liabilities  or  require  us  to  seek  licenses  to  other  parties' patents or
proprietary rights. We may also be restricted or prevented from manufacturing or
selling  our  products.  Further,  we  may  not  be able to obtain the necessary
licenses  on  acceptable  terms,  if  at  all.

WE  MAY  ENCOUNTER  PROBLEMS  IN  MEETING CUSTOMERS' SOFTWARE NEEDS, WHICH COULD
ADVERSELY  IMPACT  OUR  REVENUES  AND  THE  GOODWILL  OF  OUR  CUSTOMERS

          Our  databases  also  require  software  support  and  will  need  to
incorporate  features  determined  by  database  collaborators. If we experience
delays  or  difficulties  in implementing our database software or collaborator-
requested  features,  we  may  be  unable  to  service  our  collaborators.

PAST  ACQUISITIONS  HAVE  AND  ANY  FUTURE  ACQUISITIONS  THAT WE MAY MAKE COULD
ADVERSELY  AFFECT  OUR  OPERATIONS  OR  FINANCIAL  RESULTS

          As  part  of  our  business  strategy,  we  may  acquire other assets,
technologies  and businesses. We acquired Synteni in January 1998 and Hexagen in
September  1998.

     These  and  any  future  acquisitions  involve risks such as the following:

- -     we  may  be  exposed  to  unknown  liabilities  of  acquired  companies;

- -     our  acquisition  and  integration costs may be higher than we anticipated
and  may  cause  our  quarterly  and  annual  operating  results  to  fluctuate;

- -     we  may  experience  difficulty and expense in assimilating the operations
and  personnel of the acquired businesses, disrupting our business and diverting
management's  time  and  attention;

- -     we  may be unable to integrate or complete the development and application
of  acquired  technology;

- -     we  may  experience  difficulties  in establishing and maintaining uniform
standards,  controls,  procedures  and  policies;

- -     our  relationships  with  key  customers  of  acquired  businesses  may be
impaired, due to changes in management and ownership of the acquired businesses;

- -     we  may  be  unable  to  retain  key employees of the acquired businesses;

- -     we  may  incur  amortization  expenses  if  an  acquisition  results  in
significant  goodwill  or  other  intangible  assets;  and

- -     our  stockholders may be diluted if we pay for the acquisition with equity
securities.

          In  addition, if we acquire additional businesses that are not located
near  our  Palo Alto, California headquarters, we may experience more difficulty
integrating  and  managing  the  acquired  businesses'  operations.

WE  MAY  HAVE  DIFFICULTY  MANAGING  OUR GROWTH, WHICH MAY IMPACT OUR ABILITY TO
OPTIMIZE  OUR  RESOURCES

          We  expect  to continue to experience significant growth in the number
of  our  employees  and the scope of our operations. This growth has placed, and
may  continue  to  place, a significant strain on our management and operations.
Our  ability to manage this growth will depend upon our ability to attract, hire
and retain skilled employees. Our success will also depend on the ability of our
officers  and key employees to continue to implement and improve our operational
and  other  systems  and  to  hire,  train  and  manage  our  employees.

          In  addition, we must continue to invest in customer support resources
as the number of database collaborators and their requests for support increase.
Our  database  collaborators typically have worldwide operations and may require
support at multiple U.S. and foreign sites. To provide this support, we may need
to  open  offices  in addition to our Palo Alto, California headquarters and our
offices  in  Fremont,  California,  St.  Louis, Missouri and Cambridge, England,
which  could  result  in  additional  burdens  on  our  systems  and  resources.

WE DEPEND ON KEY EMPLOYEES IN A COMPETITIVE MARKET FOR SKILLED PERSONNEL AND THE
LOSS  OF  THE  SERVICES  OF ANY OF OUR KEY EMPLOYEES WOULD MATERIALLY AFFECT OUR
BUSINESS

          We  are  highly  dependent on the principal members of our management,
operations  and  scientific staff, including our executive officers. The loss of
services  of  these  individuals  may  have  a  material  adverse  effect on our
business.  We  have  not entered into any employment agreement with any of these
persons  and  do  not maintain a key person life insurance policy on the life of
any  employee.

          Our  future  success also will depend in part on the continued service
of  our  executive management team, key scientific, software, bioinformatics and
management  personnel  and  our  ability to identify, hire and retain additional
personnel,  including customer service, marketing and sales staff. We experience
intense  competition  for qualified personnel. We may not be able to continue to
attract  and  retain  personnel  necessary  for the development of our business.

OUR  INABILITY  TO  OBTAIN  NECESSARY  EQUIPMENT,  SUPPLIES  AND DATA FROM THIRD
PARTIES  MAY  ADVERSELY  IMPACT  OUR  RESULTS

          WE RELY ON A SMALL NUMBER OF SUPPLIERS OF GENE SEQUENCING MACHINES AND
REAGENTS  REQUIRED  FOR  GENE SEQUENCING. Although we are evaluating alternative
gene  sequencing machines, they may not be available in sufficient quantities or
at  acceptable costs. In addition, if a third party claims that our use of these
machines  infringes  their patent rights, our use of these machines could become
more  costly  or  could  be  prevented.  If  we  are unable to obtain additional
machines  or  an  adequate supply of reagents or other materials at commercially
reasonable  rates,  our  ability  to  identify genes and SNPs would be adversely
affected.

          WE  RELY  ON  OUTSIDE SOURCES FOR TISSUE SAMPLES FROM WHICH WE ISOLATE
GENETIC  MATERIAL  USED  IN  OUR  OPERATIONS.  Our  business  could be adversely
affected  if  we  lose  access  to  some of these sources, or if they charged us
higher access fees or imposed tighter restrictions on our use of the information
generated  from  the  samples.

          WE  CANNOT CONTROL THE PERFORMANCE OF COLLABORATORS. We may enter into
research and development relationships with corporate and academic collaborators
and  others.  The  success  of  these  relationships depends upon third parties'
performance  of  their  responsibilities.  Our  ability  to  develop  these
relationships  is  uncertain,  and  any  established  relationships  may  prove
unsuccessful. Our collaborators may also be pursuing alternative technologies or
developing  alternative  products  on their own or in collaboration with others,
including  our  competitors.

          WE  RELY  ON THIRD-PARTY DATA SOURCES. We rely on scientific and other
data  supplied  by  others,  including our academic collaborators and sources of
tissue  samples.  This  data  could contain errors or other defects, which could
corrupt  our  databases.  In addition, we cannot guarantee that our data sources
acquired  this  information  in compliance with legal requirements. If either of
these  happen  and  become  known,  our  business  prospects  could be adversely
affected.

SECURITY  RISKS  IN  ELECTRONIC COMMERCE OR UNFAVORABLE INTERNET REGULATIONS MAY
DETER  FUTURE  USE  OF OUR PRODUCTS AND SERVICES, WHICH COULD HARM OUR BUSINESS.

     We  plan to make our products available through our website on the Internet
and  have recently introduced our first online product, the LifeSeq Gene-by-Gene
program.  Online  use of our products and services by our database collaborators
may  be limited by our inability to provide secure transmissions of confidential
information  over  the  Internet.  The  security  measures we use to protect our
website,  access to our databases, and transmissions to and from our website may
be  compromised  by advances in computer capabilities and new discoveries in the
field  of  cryptography.  If our security measures are breached, our proprietary
information  or  confidential  information  about  our  collaborators  could  be
misappropriated.  Also,  a  security breach could result in interruptions in our
operations.  The  security  measures  we  adopt may not be sufficient to prevent
breaches and we may incur significant costs to protect against security breaches
or  to  alleviate  problems  caused by breaches. Further, if the security of our
website  or the website of another company is breached, our collaborators may no
longer  use  the  Internet  when the transmission of confidential information is
involved.  For  example,  recent attacks by computer hackers on major e-commerce
websites and other Internet service providers have heightened concerns regarding
the  security  and  reliability  of  the  Internet.

     Because  of  the  growth in electronic commerce, the United States Congress
has  held  hearings  on  whether  to  further regulate providers of services and
transactions  in  the  electronic  commerce market. The federal government could
enact  laws,  rules  and  regulations  that  affect our business and operations.
Individual  states  could also enact laws regulating the use of the Internet. If
enacted, these federal and state laws, rules and regulations could require us to
change  our  online  business  and  operations,  which  could harm our business.

OUR  ACTIVITIES  INVOLVE  HAZARDOUS  MATERIALS  AND  MAY  SUBJECT  US  TO COSTLY
ENVIRONMENTAL  LIABILITY

          Our  research and development involves the controlled use of hazardous
and radioactive materials and biological waste. We are subject to federal, state
and local laws and regulations governing the use, manufacture, storage, handling
and  disposal of these materials and certain waste products. Although we believe
that  our safety procedures for handling and disposing of these materials comply
with  legally  prescribed  standards,  the  risk  of accidental contamination or
injury  from these materials cannot be completely eliminated. In the event of an
accident,  we  could be held liable for damages, and this liability could exceed
our  resources.

          We  believe  that  we  are in compliance in all material respects with
applicable  environmental  laws  and  regulations and currently do not expect to
make  material  additional  capital  expenditures  for  environmental  control
facilities  in the near term. However, we may have to incur significant costs to
comply  with  current  or  future  environmental  laws  and  regulations.

OUR  REVENUES  ARE  DERIVED  PRIMARILY FROM THE PHARMACEUTICAL AND BIOTECHNOLOGY
INDUSTRIES  AND  MAY  FLUCTUATE  SUBSTANTIALLY  DUE  TO REDUCTIONS AND DELAYS IN
RESEARCH  AND  DEVELOPMENT  EXPENDITURES

          We  expect that our revenues in the foreseeable future will be derived
primarily  from  products  and  services  provided  to  the  pharmaceutical  and
biotechnology  industries as well as to the academic community. Accordingly, our
success will depend in large part upon the success of the companies within these
industries and their demand for our products and services. Our operating results
may  fluctuate  substantially  due  to  reductions  and  delays  in research and
development  expenditures  by  companies  in these industries or by the academic
community.  These  reductions  and  delays  may  result  from  factors  such as:

- -     changes  in  economic  conditions;

- -     consolidation  in  the  pharmaceutical  industry;

- -     changes  in  the  regulatory  environment affecting health care and health
care  providers;

- -     pricing  pressures;

- -     market-driven  pressures on companies to consolidate and reduce costs; and

- -     other  factors  affecting  research  and  development  spending.

     These  factors  are  not  within  our  control.

OUR  BUSINESS  COULD  BE  INTERRUPTED  BY  NATURAL  DISASTERS

          We  conduct  our  sequencing  and  a  significant portion of our other
activities  at  our  facilities  in  Palo  Alto,  California,  and  conduct  our
microarray-related  activities  at  our  facilities in Fremont, California. Both
locations  are  in  a  seismically  active  area.  Although we maintain business
interruption insurance, we do not have or plan to obtain earthquake insurance. A
major catastrophe (such as an earthquake or other natural disaster) could result
in  a  prolonged  interruption  of  our  business.

SUBSTANTIAL  LEVERAGE AND DEBT SERVICE OBLIGATIONS MAY ADVERSELY AFFECT OUR CASH
FLOW

          We have substantial amounts of outstanding indebtedness, primarily the
$200.0  million  of convertible subordinated notes issued in February 2000. As a
result of this indebtedness, our principal and interest payment obligations have
increased  substantially.  There  is  the  possibility  that we may be unable to
generate  cash sufficient to pay the principal of, interest on and other amounts
due  in  respect  of  our  indebtedness  when  due.


<PAGE>
PART  I:  FINANCIAL  INFORMATION
ITEM  3:  QUANTITATIVE  AND  QUALITATIVE  DISCLOSURES  ABOUT  MARKET  RISK

     The  Company  is  exposed  to  interest  rate  risk  primarily  through its
investments  in  short-term  marketable  securities  and  its  note payable. The
Company's  investment  policy  calls  for  investment  in  short  term, low risk
instruments.  As  of  March  31,  2000, investments in marketable securities was
$630.7  million.  Due  to  the  nature  of these investments and note, if market
interest  rates were to increase immediately and uniformly by 10% from levels as
of  December  31, 1999, the decline in the fair value of the portfolio would not
be  material.

The Company is exposed to equity price risks on the marketable portion of equity
securities  included  in its portfolio of investments and long-term investments,
entered into to further its business and strategic objectives. These investments
are  in  small  capitalization  stocks  in  the  pharmaceutical/biotech industry
sector,  in  companies  with  which  the Company has research and development or
licensing  agreements.  The  Company  typically  does  not  attempt to reduce or
eliminate  its  market  exposure  on  these  securities.  As  of March 31, 2000,
long-term  investments,  excluding  diaDexus,  were  $37.5  million.

The  Company  typically does not hedge its foreign currency exposure. Management
does  not  believe  that  the  Company's  exposure  to  foreign  currency  rate
fluctuations  is  material.


<PAGE>
PART  II:   OTHER  INFORMATION

ITEM  1     Legal  Proceedings

          In  January  1998,  Affymetrix, Inc. ("Affymetrix") filed a lawsuit in
the  United  States  District  Court  for the District of Delaware, subsequently
transferred  to  the  United  States District Court for the Northern District of
California  in  November  1998,  alleging  infringement  of  U.S.  patent number
5,445,934  (the "'934 Patent") by both Synteni and Incyte. The complaint alleges
that  the  '934  Patent  has  been  infringed  by  the  making,  using, selling,
importing,  distributing  or offering to sell in the U.S. high density arrays by
Synteni  and  Incyte  and that such infringement was willful. Affymetrix seeks a
permanent  injunction  enjoining Synteni and Incyte from further infringement of
the  '934  Patent and, in addition, seeks damages, costs and attorney's fees and
interest.  Affymetrix further requests that any such damages be trebled based on
its  allegation  of  willful  infringement  by  Incyte  and  Synteni.

          In  September  1998,  Affymetrix  filed  an  additional lawsuit in the
United  States  District  Court  for  the  District  of  Delaware,  subsequently
transferred  to  the  United  States District Court for the Northern District of
California  in  November  1998,  alleging infringement of the U.S. patent number
5,800,992  (the  "'992  Patent")  and  U.S.  patent  number 5,744,305 (the "'305
Patent")  by both Synteni and Incyte. The complaint alleges that the '305 Patent
has  been  infringed  by  the making, using, selling, importing, distributing or
offering to sell in the United States high density arrays by Synteni and Incyte,
that the '992 Patent has been infringed by the use of Synteni's and Incyte's GEM
microarray  technology  to  conduct  gene  expression monitoring using two-color
labeling,  and  that such infringement was willful. Affymetrix seeks a permanent
injunction  enjoining  Synteni  and Incyte from further infringement of the '305
and  '992  Patents  and,  in  addition,  Affymetrix  had  sought  a  preliminary
injunction  enjoining  Incyte  and Synteni from using Synteni's and Incyte's GEM
microarray  technology  to  conduct  gene  expression monitoring using two-color
labeling as described in the '992 Patent. Affymetrix's request for a preliminary
injunction  was denied in May 1999. As a result of the assignment of the case to
a new judge, all scheduled trial and pretrial dates have been vacated. The court
is  expected  to  set  a  new  schedule  in  July  2000.

          In April 1999, the Board of Patent Appeals and Interferences of United
States  Patent and Trademark Office (PTO) declared interferences between pending
patent  applications  licensed exclusively to Incyte and the Affymetrix '305 and
'992  Patents.  An  interference proceeding is invoked by the PTO when more than
one  patent applicant claims the same invention. The Board of Patent Appeals and
Interferences  evaluates all relevant facts, including those bearing on first to
invent, validity, enablement and scope of claims, and then makes a determination
as  to  who,  if anyone, is entitled to the patent on the disputed invention. In
September  1999,  the  Board of Patent Appeals and Interferences determined that
Incyte  had not met its prima facie case, and ruled that the patents licensed by
Incyte  and  Synteni from Stanford University were not entitled to priority over
corresponding  claims  in  the two Affymetrix patents. The Company is seeking de
novo  review  of the Board decisions in the United States District Court for the
Northern  District  of  California.

          Incyte  and  Synteni believe they have meritorious defenses and intend
to  defend  the suits vigorously. However, there can be no assurance that Incyte
and  Synteni will be successful in the defense of these suits. At this time, the
Company cannot reasonably estimate the possible range of any loss resulting from
these suits due to uncertainty regarding the ultimate outcome. Regardless of the
outcome,  this  litigation has resulted and is expected to continue to result in
substantial  expenses  and  diversion of the efforts of management and technical
personnel.  Further,  there  can  be  no  assurance that any license that may be
required as a result of this suit or the outcome thereof would be made available
on  commercially  acceptable  terms,  if  at  all.


<PAGE>
ITEM  2     Changes  in  Securities

(a)     Not  applicable

(b)     Not  applicable

(c)  On  February  4  and  February  14, 2000, the Company completed the sale of
$150,000,000  and  $50,000,000  aggregate  principal  amount of 5.5% Convertible
Subordinated  Notes  Due  2007  (the "Notes").  The Notes are convertible at the
option  of  the  holder  into  shares  of  Common  Stock,  at  any time prior to
redemption  or maturity, at a conversion price of $134.839 per share (equal to a
conversion  rate  of  7.4163 shares per $1,000 principal amount of the Notes and
representing  in  the  aggregate  1,483,250 shares), subject to adjustment under
certain  circumstances.

The  Notes were sold by the Company to Deutsche Bank Securities Inc. and Warburg
Dillon  Read LLC, as initial purchasers (the "Initial Purchasers"), in a private
placement  in  reliance  upon  Section  4(2)  of  the Securities Act of 1933, as
amended  (the  "Act")  and  Regulation  D under the Act.  The aggregate offering
price  of  the  Notes was $200,000,000 and the aggregate discount to the Initial
Purchasers  was  $6,000,000.

The  Company  has  been  advised that the Initial Purchasers resold $141,400,000
aggregate  principal  amount of the Notes to "qualified institutional buyers" in
reliance on Rule 144A under the Act and $8,600,000 aggregate principal amount of
the  Notes in sales outside the United Stated to persons other than U.S. persons
in  reliance  on  Regulation  S  under  the  Securities  Act.

On  February  28,  2000 the Company entered into a Stock Purchase Agreement with
each of Janus Aspen Series and Janus Investment Fund pursuant to which it issued
and  sold  305,355  and  1,694,645  shares of Common Stock, respectively, for an
aggregate  purchase  price of $422,000,000.  The Company relied on the exemption
provided  by Section 4(2) of the Act and Regulation D under the Act, because the
transaction did not involve a public offering and each of Janus Aspen Series and
Janus  Investment  Fund represented that it was an "accredited investor" as such
term  in  defined  by  the  rules  of  the  SEC  promulgated  under  the  Act.


(d)  Not  applicable

ITEM  3     Defaults  Upon  Senior  Securities
     None

ITEM  4     Submission  of  Matters  to  a  Vote  of  Security  Holders
     None

ITEM  5     Other  Information
     None


<PAGE>
ITEM  6     Exhibits  and  Reports  on  Form  8-K.

     a)     Exhibits
          See  Exhibit  Index  on  Page  32

     b)     Reports  on  Form  8-K

The  Company  filed  5  reports on Form 8-K during the fiscal quarter covered by
this  report,  as  follows:

(i)     Current  Report  on Form 8-K, filed on February 1, 2000, reporting under
Item  5  the  Company's  financial  information  for  the quarter and year ended
December 31, 1999 and announcement of the Company's proposed private offering of
convertible  subordinated  notes.

(ii)      Current  Report  on  Form  8-K,  filed on February 17, 2000, reporting
under  Item  5,  the Company's announcement of the issuance of an additional $50
million  of  convertible  subordinated  noted.

(iii)     Current  Report  on  Form  8-K,  filed on February 22, 2000, reporting
under  Item  5,  the  Company's  updated  description  of  its business and risk
factors.

(iv)     Current Report on Form 8-K, filed on February 24, 2000, reporting under
Item 5, the Company's announcement of the Company's issuance of 2,000,000 of its
common  stock  to  selected  institutional  investors  at a price of $211.00 per
share.

(v)       Current  Report  on Form 8-K, filed on March 24, 2000, reporting under
Item  5,  the  June  5,  2000  date  for  the  Company's  2000 Annual Meeting of
stockholders.


<PAGE>
Pursuant  to  the  requirements  of  the  Securities  Exchange  Act of 1934, the
registrant  has  duly  caused  this  report  to  be  signed on its behalf by the
undersigned  thereunto  duly  authorized.


                                                    INCYTE PHARMACEUTICALS, INC.



Date:     May  12,  2000     By:     /s/  Roy  A.  Whitfield
                                     -----------------------
                                     Roy  A.  Whitfield
                                     Chief  Executive  Officer


Date:     May  12,  2000     By:     /s/  John  M.  Vuko
                                     -------------------
                                     John  M.  Vuko
                                     Chief  Financial  Officer

<PAGE>
                          INCYTE PHARMACEUTICALS, INC.

                                  EXHIBIT INDEX



<TABLE>
<CAPTION>



     NO.                  EXHIBIT                  PAGE
     ---  ---------------------------------------  ----
<S>  <C>  <C>                                      <C>

xxx   27  Financial Data Schedule, March 31, 2000    33
</TABLE>



<TABLE> <S> <C>

<ARTICLE> 5

<S>                             <C>
<PERIOD-TYPE>                   3-MOS
<FISCAL-YEAR-END>                          DEC-31-2000
<PERIOD-END>                               MAR-31-2000
<CASH>                                          421334
<SECURITIES>                                    270820
<RECEIVABLES>                                    14619
<ALLOWANCES>                                       251
<INVENTORY>                                          0
<CURRENT-ASSETS>                                728940
<PP&E>                                          132072
<DEPRECIATION>                                   58510
<TOTAL-ASSETS>                                  875692
<CURRENT-LIABILITIES>                            67949
<BONDS>                                         203423
                                0
                                          0
<COMMON>                                            32
<OTHER-SE>                                      604288
<TOTAL-LIABILITY-AND-EQUITY>                    875692
<SALES>                                              0
<TOTAL-REVENUES>                                 40754
<CGS>                                                0
<TOTAL-COSTS>                                        0
<OTHER-EXPENSES>                                 41334
<LOSS-PROVISION>                                     0
<INTEREST-EXPENSE>                                1897
<INCOME-PRETAX>                                 (8177)
<INCOME-TAX>                                         0
<INCOME-CONTINUING>                             (8177)
<DISCONTINUED>                                       0
<EXTRAORDINARY>                                      0
<CHANGES>                                            0
<NET-INCOME>                                    (8177)
<EPS-BASIC>                                   (0.27)
<EPS-DILUTED>                                   (0.27)


</TABLE>


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