SYNAPTIC PHARMACEUTICAL CORP
S-3, 1997-10-08
COMMERCIAL PHYSICAL & BIOLOGICAL RESEARCH
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<PAGE>
    AS FILED WITH THE SECURITIES AND EXCHANGE COMMISSION ON OCTOBER 8, 1997
                                                      REGISTRATION NO. 333-
- --------------------------------------------------------------------------------
- --------------------------------------------------------------------------------
 
                       SECURITIES AND EXCHANGE COMMISSION
                             WASHINGTON, D.C. 20549
                            ------------------------
 
                                    FORM S-3
 
                             REGISTRATION STATEMENT
 
                                     UNDER
 
                           THE SECURITIES ACT OF 1933
                            ------------------------
 
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
<TABLE>
<S>                                                          <C>
                         DELAWARE                                                    22-2859704
              (State or other jurisdiction of                                     (I.R.S. Employer
              incorporation or organization)                                     Identification No.)
</TABLE>
 
                                215 COLLEGE ROAD
                           PARAMUS, NEW JERSEY 07652
                                 (201) 261-1331
    (Address, including zip code, and telephone number, including area code,
                  of Registrant's principal executive offices)
 
                         ------------------------------
 
                              KATHLEEN P. MULLINIX
                     PRESIDENT AND CHIEF EXECUTIVE OFFICER
                      SYNAPTIC PHARMACEUTICAL CORPORATION
                                215 COLLEGE ROAD
                           PARAMUS, NEW JERSEY 07652
                                 (201) 261-1331
      (Name, address, including zip code, and telephone number, including
                        area code, of agent for service)
 
                         ------------------------------
 
                        COPIES OF ALL COMMUNICATIONS TO:
 
<TABLE>
<S>                                       <C>                                       <C>
          LISA L. REITER, ESQ.                   ROBERT W. MURRAY JR., ESQ.                  GARY L. SELLERS, ESQ.
            GENERAL COUNSEL                        BAKER & BOTTS, L.L.P.                   SIMPSON THACHER & BARTLETT
  SYNAPTIC PHARMACEUTICAL CORPORATION               599 LEXINGTON AVENUE                      425 LEXINGTON AVENUE
            215 COLLEGE ROAD                      NEW YORK, NEW YORK 10022                  NEW YORK, NEW YORK 10017
       PARAMUS, NEW JERSEY 07652
</TABLE>
 
                         ------------------------------
 
    APPROXIMATE DATE OF COMMENCEMENT OF PROPOSED SALE TO PUBLIC: As soon as
practicable after this registration statement becomes effective.
 
                         ------------------------------
 
    If the only securities being registered on this Form are being offered
pursuant to dividend or interest reinvestment plans, please check the following
box.  / /
 
    If any of the securities being registered on this Form are to be offered on
a delayed or continuous basis pursuant to Rule 415 under the Securities Act of
1933, as amended (the "Securities Act") other than securities offered only in
connection with dividend or interest reinvestment plans, please check the
following box.  / /
 
    If this Form is filed to register additional securities for an offering
pursuant to Rule 462(b) under the Securities Act, please check the following box
and list the Securities Act registration statement number of the earlier
effective registration statement for the same offering.  / /
 
    If this Form is a post-effective amendment filed pursuant to Rule 462(c)
under the Securities Act, check the following box and list the Securities Act
registration statement number of the earlier registration statement for the same
offering.  / /
 
    If delivery of the prospectus is expected to be made pursuant to Rule 434,
please check the following box.  / /
                         ------------------------------
 
                        CALCULATION OF REGISTRATION FEE
 
<TABLE>
<CAPTION>
               TITLE OF EACH                       AMOUNT         PROPOSED MAXIMUM    PROPOSED MAXIMUM       AMOUNT OF
            CLASS OF SECURITIES                    TO BE           OFFERING PRICE        AGGREGATE          REGISTRATION
             TO BE REGISTERED                  REGISTERED(1)        PER SHARE(2)     OFFERING PRICE(2)          FEE
<S>                                          <C>                 <C>                 <C>                 <C>
Common Stock, par value $.01 per share.....      2,875,000            $14.063           $40,431,125           $12,252
Rights to Purchase Series A Junior
  Participating Preferred Stock, par value
  $.01 per share...........................      2,875,000              (3)                 (3)                 (3)
</TABLE>
 
(1) Includes 375,000 shares and the associated rights to purchase shares of
    Series A Junior Participating Preferred Stock ("Rights") which may be
    purchased by the Underwriters from the Registrant pursuant to an
    over-allotment option. See "Underwriting."
 
(2) Estimated solely for the purpose of calculating the registration fee
    pursuant to Rule 457(c) under the Securities Act.
 
(3) No separate consideration is paid for the Rights. The value attributable to
    the Rights is reflected in the offering price for the Common Stock.
    Accordingly, the registration fee for the Rights is included in the fee for
    the Common Stock.
 
                         ------------------------------
 
    THE REGISTRANT HEREBY AMENDS THIS REGISTRATION STATEMENT ON SUCH DATE OR
DATES AS MAY BE NECESSARY TO DELAY ITS EFFECTIVE DATE UNTIL THE REGISTRANT SHALL
FILE A FURTHER AMENDMENT WHICH SPECIFICALLY STATES THAT THIS REGISTRATION
STATEMENT SHALL THEREAFTER BECOME EFFECTIVE IN ACCORDANCE WITH SECTION 8(A) OF
THE SECURITIES ACT OR UNTIL THE REGISTRATION STATEMENT SHALL BECOME EFFECTIVE ON
SUCH DATE AS THE SECURITIES AND EXCHANGE COMMISSION, ACTING PURSUANT TO SAID
SECTION 8(A), MAY DETERMINE.
 
- --------------------------------------------------------------------------------
- --------------------------------------------------------------------------------
<PAGE>
PRELIMINARY PROSPECTUS
INFORMATION CONTAINED HEREIN IS SUBJECT TO COMPLETION OR AMENDMENT. A
REGISTRATION STATEMENT RELATING TO THESE SECURITIES HAS BEEN FILED WITH THE
SECURITIES AND EXCHANGE COMMISSION. THESE SECURITIES MAY NOT BE SOLD NOR MAY
OFFERS TO BUY BE ACCEPTED PRIOR TO THE TIME THE REGISTRATION BECOMES EFFECTIVE.
THIS PROSPECTUS SHALL NOT CONSTITUTE AN OFFER TO SELL OR THE SOLICITATION OF AN
OFFER TO BUY NOR SHALL THERE BE ANY SALE OF THESE SECURITIES IN ANY STATE IN
WHICH SUCH OFFER, SOLICITATION OR SALE WOULD BE UNLAWFUL PRIOR TO REGISTRATION
OR QUALIFICATION UNDER THE SECURITIES LAWS OF ANY SUCH STATE.
<PAGE>
                                2,500,000 SHARES
 
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                                     [LOGO]
 
                                  COMMON STOCK
                               ------------------
 
    All of the shares of Common Stock offered hereby (the "Offering") are being
issued and sold by Synaptic Pharmaceutical Corporation ("Synaptic" or the
"Company"). The Common Stock is traded on the National Market tier of The Nasdaq
Stock Market ("Nasdaq") under the symbol "SNAP." On October 7, 1997, the last
trade price of the Common Stock as reported on Nasdaq was $14.875 per share. See
"Price Range of Common Stock."
                            ------------------------
 
        THE COMMON STOCK OFFERED HEREBY INVOLVES A HIGH DEGREE OF RISK.
       SEE "RISK FACTORS" STARTING ON PAGE 7 FOR A DISCUSSION OF CERTAIN
          FACTORS THAT SHOULD BE CONSIDERED BY PROSPECTIVE INVESTORS.
                             ---------------------
THESE SECURITIES HAVE NOT BEEN APPROVED OR DISAPPROVED BY THE SECURITIES AND
     EXCHANGE COMMISSION OR ANY STATE SECURITIES COMMISSION, NOR HAS THE
          SECURITIES AND EXCHANGE COMMISSION OR ANY STATE SECURITIES
        COMMISSION PASSED UPON THE ACCURACY OR ADEQUACY OF THIS
               PROSPECTUS. ANY REPRESENTATION TO THE CONTRARY
                             IS A CRIMINAL OFFENSE.
<TABLE>
<CAPTION>
                                                                                  UNDERWRITING
                                                   PRICE TO                       DISCOUNTS AND
                                                    PUBLIC                       COMMISSIONS(1)
<S>                                     <C>                              <C>
Per Share.............................                 $                                $
Total(3)..............................                 $                                $
 
<CAPTION>
 
                                                  PROCEEDS TO
                                                  COMPANY(2)
<S>                                     <C>
Per Share.............................                 $
Total(3)..............................                 $
</TABLE>
 
(1) The Company has agreed to indemnify the Underwriters against certain
    liabilities, including liabilities under the Securities Act of 1933, as
    amended (the "Securities Act"). See "Underwriting."
 
(2) Before deducting expenses of the Offering estimated at $500,000.
 
(3) The Company has granted the Underwriters an option, exercisable within 30
    days after the date hereof, to purchase up to an aggregate of 375,000
    additional shares of Common Stock to cover over-allotments, if any. If such
    option is exercised in full, the total Price to Public, Underwriting
    Discounts and Commissions and Proceeds to Company will be $         ,
    $         and $         , respectively. See "Underwriting."
                           --------------------------
 
    The shares of Common Stock offered hereby are offered by the several
Underwriters, subject to prior sale, when, as and if issued to and accepted by
them, subject to approval of certain legal matters by counsel for the
Underwriters and certain other conditions. The Underwriters reserve the right to
withdraw, cancel or modify such offer and to reject orders in whole or in part.
It is expected that delivery of the shares of Common Stock will be made at the
offices of Bear, Stearns & Co. Inc., 245 Park Avenue, New York, New York 10167
on or about         .
 
                            ------------------------
 
BEAR, STEARNS & CO. INC.
 
          HAMBRECHT & QUIST
 
                     VECTOR SECURITIES INTERNATIONAL, INC.
                            ------------------------
 
              THE DATE OF THIS PROSPECTUS IS              , 1997.
<PAGE>
                SUMMARY OF SYNAPTIC PHARMACEUTICAL CORPORATION'S
                      RECEPTOR AND DRUG DISCOVERY PROGRAMS
 
    Certain of Synaptic's receptor and drug discovery programs are summarized in
the following table:
 
<TABLE>
<CAPTION>
- ------------------------------------------------------------------------------------
PROGRAM           RECEPTOR(S) PRIMARY INDICATION(S)       STATUS(1)        PARTNER
- ------------------------------------------------------------------------------------
<S>               <C>         <C>                         <C>              <C>
SEROTONIN         1F          Acute Migraine              Phase II         Eli Lilly
                                                            Clinical
                  2B          Migraine Prophylaxis        Early            Eli Lilly
                                                            Preclinical
                  1A          Smoking Cessation           Early            Eli Lilly
                                                            Preclinical
                  2C          Obesity                     Early            Eli Lilly
                                                            Preclinical
                  --(2)       Depression                  Early            Eli Lilly
                                                            Preclinical
ALPHA ADRENERGIC  1a          Benign Prostatic            Late             Merck
                                Hyperplasia                 Preclinical
                  --(2)       Pain                        Leads            --
                                                            Identified
NEUROPEPTIDE Y    Y5          Obesity                     Early            Novartis
                                                            Preclinical
                  Y2          Pain                        Discovery        --
                  Y2          Anxiety and Depression      Leads            --
                                                            Identified
GALANIN           1, 2, and   Obesity, Diabetes,          Cloning and      Warner-
                  3             Alzheimer's Disease,        Discovery      Lambert
                                Depression and Pain
</TABLE>
 
- --------------------------------------------------------------------------------
 
(1) "Cloning" refers to the stage at which the Company is attempting to
    discover, identify and clone the genes for specific receptor subtypes.
 
    "Discovery" refers to the stage at which chemists are attempting to identify
    receptor subtype-selective compounds through the use of the Company's drug
    discovery systems.
 
    "Leads Identified" refers to the stage at which receptor subtype-selective
    compounds have been identified through the use of the Company's drug
    discovery systems.
 
    "Early Preclinical" refers to the stage at which one or more leads have been
    identified and are being tested in IN VITRO or IN VIVO model systems for one
    or more indications. In addition, at this stage lead compounds may have been
    shown to be active in animal models for one or more indications and
    preliminary toxicology and pharmacokinetics studies will also have been
    concluded.
 
    "Late Preclinical" refers to the stage at which a clinical candidate has
    been selected, scale-up of such candidate is underway or completed, and
    toxicology and pharmacokinetics studies are planned or underway.
 
    "Phase II Clinical" refers to the stage at which a drug candidate is
    administered to a small sample of the actual intended patient population to
    seek to assess the efficacy of the drug candidate for the specific targeted
    indication, to determine dose tolerance and the optimal dose range and to
    gather additional information relating to safety and potential adverse
    effects.
 
(2) This information is confidential to the Company and, if applicable, its
    collaborative partners.
 
    CERTAIN PERSONS PARTICIPATING IN THE OFFERING MAY ENGAGE IN TRANSACTIONS
THAT STABILIZE, MAINTAIN OR OTHERWISE AFFECT THE PRICE OF THE COMMON STOCK,
INCLUDING OVER-ALLOTMENT, STABILIZING BIDS AND SHORT COVERING TRANSACTIONS AND
THE IMPOSITION OF PENALTY BIDS. SEE "UNDERWRITING."
 
    CERTAIN PERSONS PARTICIPATING IN THE OFFERING MAY ENGAGE IN PASSIVE MARKET
MAKING TRANSACTIONS IN THE COMMON STOCK OF THE COMPANY ON NASDAQ IN ACCORDANCE
WITH RULE 103 OF REGULATION M UNDER THE SECURITIES EXCHANGE ACT OF 1934. SEE
"UNDERWRITING."
 
                                       2
<PAGE>
                               PROSPECTUS SUMMARY
 
    THE FOLLOWING SUMMARY IS QUALIFIED IN ITS ENTIRETY BY THE MORE DETAILED
INFORMATION AND THE FINANCIAL STATEMENTS AND NOTES THERETO APPEARING ELSEWHERE
AND INCORPORATED BY REFERENCE IN THIS PROSPECTUS, INCLUDING THE INFORMATION
UNDER "RISK FACTORS." EXCEPT AS OTHERWISE NOTED, ALL INFORMATION IN THIS
PROSPECTUS ASSUMES NO EXERCISE OF THE UNDERWRITERS' OVER-ALLOTMENT OPTION. THIS
PROSPECTUS CONTAINS, IN ADDITION TO HISTORICAL INFORMATION, FORWARD-LOOKING
STATEMENTS THAT INVOLVE RISKS AND UNCERTAINTIES. THE COMPANY'S ACTUAL RESULTS
AND THE TIMING OF CERTAIN EVENTS COULD DIFFER MATERIALLY FROM THOSE DISCUSSED IN
OR PROJECTED BY THE FORWARD-LOOKING STATEMENTS. FACTORS THAT COULD CAUSE OR
CONTRIBUTE TO SUCH DIFFERENCES INCLUDE THOSE DISCUSSED UNDER "RISK FACTORS," AS
WELL AS THOSE DISCUSSED ELSEWHERE IN THIS PROSPECTUS. SEE "SPECIAL NOTE
REGARDING FORWARD-LOOKING STATEMENTS."
 
                                  THE COMPANY
 
    Synaptic is a leader in the development of a broad platform of enabling
technology which it calls "human receptor-targeted drug design technology." The
Company is utilizing this technology to discover and clone the genes that code
for human receptor subtypes associated with specific disorders and is working
both independently and together with its collaborative partners to design
compounds that can potentially be developed as drugs for treating these
disorders. In addition to conducting several internal programs, the Company is
currently collaborating with Eli Lilly and Company ("Lilly"), Merck & Co., Inc.
("Merck"), Novartis Pharma A.G. ("Novartis") and Warner-Lambert Company
("Warner-Lambert") on more than twelve separate drug discovery programs covering
ten therapeutic areas. To date, these programs have yielded one Phase II
clinical and six preclinical drug development candidates.
 
    Synaptic's business strategy is to develop, together with its collaborative
partners, a broad array of drugs based upon the Company's human
receptor-targeted drug design technology. This strategy consists of four
principal objectives: (i) to aggressively discover and clone G protein-coupled
receptor genes; (ii) to efficiently discover and design potential drugs through
the use of its human receptor-targeted drug design technology; (iii) to leverage
resources and generate royalty-based revenues through collaborative and
licensing arrangements with pharmaceutical companies; and (iv) to retain
ownership rights to certain products developed through the use of its
technology.
 
    Synaptic's human receptor-targeted drug design technology is the result of
an integrated approach to four life science fields: molecular biology; cell
biology; pharmacology; and chemistry, including medicinal, combinatorial and
computer-assisted chemistry. This technology allows chemists to focus their drug
discovery efforts on a specific human receptor subtype target. The Company
believes that its technology provides three distinct advantages over the
traditional approach to drug discovery in which compounds are screened against
animal tissues containing many different receptor subtypes. FIRST, by having an
isolated receptor subtype as a target, chemists are better able to design
compounds that interact with only the target of interest and not with other
receptors that may be responsible for side effects. SECOND, the Company believes
that using human receptor subtypes as drug design targets will substantially
reduce the number of problems that often arise during the drug development
process as a result of differences in a compound's activity in humans compared
to its activity in animal tissues. THIRD, Synaptic believes that its technology
may be more cost-effective than traditional drug discovery because the Company
and its collaborative partners can eliminate or redesign compounds that react
poorly with human receptor targets prior to initiating the costly activities
related to preclinical testing and clinical trials.
 
    Synaptic focuses its receptor and drug discovery efforts on members of a
receptor superfamily known as "G protein-coupled receptors." The Company
selected this receptor family for two principal reasons. FIRST, many G
protein-coupled receptors have been shown to be effective drug targets, as
evidenced by the commercial availability of drugs for a wide variety of
therapeutic applications that work by means of their interactions with G
protein-coupled receptors. Of the one hundred drugs with the highest 1996
worldwide sales, twenty-five act through G protein-coupled receptors. SECOND,
the G protein-coupled receptor
 
                                       3
<PAGE>
superfamily is extremely large and diverse and, based on several estimates,
exceeds 1,000 receptors, with its members being involved in the mediation of a
broad array of physiological functions. Accordingly, the Company believes that
there are substantial opportunities for novel drug targets and believes that it
has assembled one of the largest collections of cloned genes that code for
members of the G protein-coupled receptor superfamily.
 
    The Company and Lilly have been collaborating since 1991 to develop drugs
that act through serotonin receptors for a variety of therapeutic applications.
One of their drug discovery programs, focused on the development of a novel drug
for the treatment of migraine, is in Phase II clinical trials. Four other
programs that are the subject of the collaboration, which are focused on the
development of a prophylactic treatment for migraine and drugs for the treatment
of smoking cessation, depression and obesity, are in the early preclinical stage
of development. The Company and Merck have been collaborating since 1993 on a
program focused on the development of a treatment for benign prostatic
hyperplasia ("BPH"). This program is in the late preclinical stage of
development. The Company and Novartis have been collaborating since 1994 on a
program focused on the development of a drug for the treatment of obesity. This
program is in the early preclinical stage of development. In July 1997, the
Company entered into a collaborative arrangement with Warner-Lambert focused on
multiple therapeutic applications, including obesity, diabetes, Alzheimer's
Disease, depression and pain.
 
    Three of the Company's collaborative partners, Lilly, Merck and Novartis,
provide the Company with financial support for research. As part of its
collaboration with the Company, Warner-Lambert is required upon the occurrence
of certain events to provide the Company with financial support for research
and, at the Company's option, to purchase equity in the Company. All four of
these collaborative partners are required to make payments to the Company upon
the achievement of certain milestones and to pay royalties to the Company based
upon net sales of any drugs resulting from their collaborations with the
Company. Through June 30, 1997, Synaptic had received an aggregate of $42.6
million in license fees, research funding and milestone payments and $14.5
million in equity investments from three of its collaborative partners. The
Company is entitled to receive additional payments from such partners in the
future. In addition to providing research funding to the Company, the Company's
collaborative partners dedicate substantial resources to the internal conduct of
their programs with the Company.
 
    The Company was incorporated in Delaware in January 1987. The address and
telephone number for the executive offices of the Company are 215 College Road,
Paramus, New Jersey 07652, (201) 261-1331.
 
                                  RISK FACTORS
 
    Prospective purchasers should carefully consider the information set forth
under the caption "Risk Factors" beginning on page 7, including, but not limited
to, those risks associated with: the early stage of product development;
technological uncertainty; dependence on collaborative partners for development,
regulatory approvals, manufacturing, marketing and other resources; history of
operating losses and accumulated deficit; future capital needs; uncertainty of
additional funding; uncertainty of patent protection; dependence on proprietary
technology; substantial competition; risk of technological obsolescence;
uncertainties related to clinical trials; stringent government regulation; no
assurance of regulatory agency approval; dependence on third party reimbursement
for future drugs and health care reform; lack of manufacturing experience;
reliance on contract manufacturers; lack of sales and marketing capability;
product liability and insurance risks; dependence on key personnel; use of
hazardous materials--potential liability and stringent government regulation;
volatility of stock price; effect of stockholders' rights plan and certain
anti-takeover provisions; potential adverse market impact on shares eligible for
future sale; absence of cash dividends; and dilution.
 
                                       4
<PAGE>
                                  THE OFFERING
 
<TABLE>
<S>                                            <C>
Common Stock offered by the Company..........  2,500,000 shares
Common Stock to be outstanding after the
  Offering...................................  10,149,997 shares(1)
Use of Proceeds..............................  For general corporate purposes, including
                                               expansion of research and development
                                               activities, expansion of the Company's
                                               technology, capital expenditures and working
                                               capital. See "Use of Proceeds."
Nasdaq Symbol................................  SNAP
</TABLE>
 
- ------------------------
 
(1) As of September 30, 1997. Excludes (a) 758,028 shares of Common Stock
    issuable upon the exercise of stock options outstanding under the Company's
    stock option plans (at a weighted average exercise price per share of $9.34)
    and (b) 144,344 shares of Common Stock reserved for issuance upon the
    exercise of outstanding warrants at a price per share of $9.50. At September
    30, 1997, options and warrants to purchase 427,515 shares of Common Stock
    were exercisable. In addition to the foregoing stock options, from October
    1, 1997, through October 7, 1997, the Company granted stock options to
    purchase 145,000 shares of Common Stock (at a weighted average exercise
    price per share of $14.25), none of which options is currently exercisable.
    See "Capitalization" and "Description of Capital Stock--Warrants."
 
                                       5
<PAGE>
                         SUMMARY FINANCIAL INFORMATION
 
    The following summary financial data should be read in conjunction with
Synaptic's audited financial statements for each of the three years in the
period ended December 31, 1996, and the notes thereto, Synaptic's unaudited
financial statements and the notes thereto for the six months ended June 30,
1996 and as of and for the six months ended June 30, 1997 and "Management's
Discussion and Analysis of Financial Condition and Results of Operations," which
are included elsewhere in this Prospectus.
 
<TABLE>
<CAPTION>
                                                                                                              UNAUDITED
                                                                                                              SIX MONTHS
                                                                                                                ENDED
                                                                YEARS ENDED DECEMBER 31,                       JUNE 30,
                                                  -----------------------------------------------------  --------------------
                                                    1992       1993       1994       1995       1996       1996       1997
                                                  ---------  ---------  ---------  ---------  ---------  ---------  ---------
<S>                                               <C>        <C>        <C>        <C>        <C>        <C>        <C>
                                                                     (in thousands, except per share data)
STATEMENT OF OPERATIONS DATA:
Revenues........................................  $   3,606  $   8,794  $   5,043  $   7,977  $   9,481  $   3,562  $   5,552
Expenses:
  Research and development......................      6,760      9,128      9,309      9,863     11,337      5,484      6,691
  General and administrative....................      1,781      1,625      1,912      2,215      2,982      1,364      1,922
                                                  ---------  ---------  ---------  ---------  ---------  ---------  ---------
    Total expenses..............................      8,541     10,753     11,221     12,078     14,319      6,848      8,613
                                                  ---------  ---------  ---------  ---------  ---------  ---------  ---------
Loss from operations............................     (4,935)    (1,959)    (6,178)    (4,101)    (4,838)    (3,286)    (3,061)
Other income, net(1)............................        362        409        651        734      2,205      1,127        966
                                                  ---------  ---------  ---------  ---------  ---------  ---------  ---------
Net loss........................................  $  (4,753) $  (1,550) $  (5,527) $  (3,367) $  (2,633) $  (2,159) $  (2,095)
                                                  ---------  ---------  ---------  ---------  ---------  ---------  ---------
                                                  ---------  ---------  ---------  ---------  ---------  ---------  ---------
Net loss per share(2)...........................                                   $   (4.76) $   (0.35) $   (0.29) $   (0.27)
                                                                                   ---------  ---------  ---------  ---------
                                                                                   ---------  ---------  ---------  ---------
Shares used in computing net loss per share.....                                         707      7,578      7,535      7,640
</TABLE>
<TABLE>
<CAPTION>
                                                                                                  UNAUDITED
                                                                                             AS OF JUNE 30, 1997
                                                                                           -----------------------
<S>                                                                                        <C>         <C>
                                                                                                           AS
                                                                                             ACTUAL    ADJUSTED(3)
                                                                                           ----------  -----------
 
<CAPTION>
                                                                                               (in thousands)
<S>                                                                                        <C>         <C>
BALANCE SHEET DATA:
Cash, cash equivalents and marketable securities(4)......................................  $   31,098   $  65,554
Working capital..........................................................................      28,106      62,562
Total assets.............................................................................      37,976      72,432
Accumulated deficit......................................................................     (26,064)    (26,064)
Stockholders' equity.....................................................................      37,040      71,496
</TABLE>
 
- ------------------------
 
(1) Other income, net, includes interest income, interest expense and gains and
    losses from the sale of marketable securities.
 
(2) Net loss per share is computed as described in Note 1 of Notes to Financial
    Statements.
 
(3) Adjusted to reflect the sale of 2,500,000 shares of Common Stock offered
    hereby at an assumed Offering price of $14.875 per share (the last trade
    price of the Common Stock on Nasdaq on October 7, 1997) and the receipt of
    the proceeds therefrom after deducting estimated underwriting discounts and
    commissions and other estimated Offering expenses. See "Use of Proceeds."
 
(4) Does not include $712,000 in restricted cash.
 
                                       6
<PAGE>
                                  RISK FACTORS
 
    AN INVESTMENT IN THE COMMON STOCK OFFERED HEREBY INVOLVES A HIGH DEGREE OF
RISK. ACCORDINGLY, PROSPECTIVE INVESTORS SHOULD CONSIDER CAREFULLY THE FOLLOWING
RISK FACTORS, AS WELL AS ALL OTHER INFORMATION CONTAINED IN THIS PROSPECTUS,
BEFORE PURCHASING THE COMMON STOCK OFFERED HEREBY.
 
EARLY STAGE OF PRODUCT DEVELOPMENT; TECHNOLOGICAL UNCERTAINTY
 
    Since its inception in January 1987, the Company has focused its activities
on the discovery and cloning of receptor genes and the use of such genes as
tools in the design of precisely targeted compounds for a broad range of
therapeutic applications. To date, the Company has not completed development of
any drugs alone or in collaboration with its partners and does not expect that
any drugs resulting from its or its collaborative partners' research and
development efforts will be commercially available for a significant number of
years, if at all. All compounds discovered by the Company and its collaborative
partners will require extensive preclinical and clinical testing prior to
submission of any regulatory application for commercial use. Extensive
preclinical and clinical testing required to establish safety and efficacy will
take several years, and the time required to commercialize new drugs cannot be
predicted with accuracy. Moreover, potential products that appear to be
promising at early stages of development may never reach the market for a number
of reasons. Such reasons include the possibilities that potential products are
found during preclinical testing or clinical trials to be ineffective or to
cause harmful side effects, that they fail to receive necessary regulatory
approvals, that they are difficult or uneconomical to manufacture on a large
scale, that they fail to achieve market acceptance or that they are precluded
from commercialization by proprietary rights of third parties. There can be no
assurance that the Company's approach to drug discovery, its research and
development efforts or the efforts of Lilly, Merck, Novartis or Warner-Lambert,
or any future collaborative partner or licensee of the Company, will result in
the development of any drugs, or that any drugs, if successfully developed, will
be proven to be safe and effective in clinical trials, receive required
regulatory approvals, be capable of being manufactured in commercial quantities
at reasonable costs or be successfully commercialized. Product development of
new pharmaceuticals is highly uncertain, and unanticipated developments,
including clinical or regulatory delays, unexpected adverse effects and
inadequate therapeutic efficacy, would slow or prevent product development
efforts of the Company and its collaborative partners and have a material
adverse effect on the Company's operations. See "Business."
 
DEPENDENCE ON COLLABORATIVE PARTNERS FOR DEVELOPMENT, REGULATORY APPROVALS,
  MANUFACTURING, MARKETING AND OTHER RESOURCES
 
    A key element of the Company's business strategy is to leverage resources by
entering into collaborative and licensing arrangements with pharmaceutical
companies. The Company has entered into the following arrangements: a Research,
Option and License Agreement dated as of January 25, 1991, as amended, with
Lilly (the "Lilly Agreement"); a Research Collaboration and License Agreement
dated as of November 30, 1993, as amended, with Merck (the "Merck Agreement"); a
Research and License Agreement dated as of August 4, 1994, as amended, with
Novartis (the "First Novartis Agreement"), a Research and License Agreement
dated as of May 31, 1996, also with Novartis (the "Second Novartis Agreement";
and together with the First Novartis Agreement, the "Novartis Agreements"); and
a Collaborative Research and License Agreement dated as of July 28, 1997, with
Warner-Lambert (the "Warner-Lambert Agreement"; and together with the Lilly
Agreement, the Merck Agreement and the Novartis Agreements, the "Collaborative
Agreements"). Under the Collaborative Agreements, Lilly, Merck, Novartis and
Warner-Lambert are each responsible for conducting preclinical testing and
clinical trials of compounds developed through the use of the Company's
technology, obtaining regulatory approvals and manufacturing and commercializing
any resulting drugs. As a result, the Company's receipt of revenues (whether in
the form of continued research funding, drug development milestones or royalties
on sales) under such agreements is dependent upon the activities and the
development, manufacturing and
 
                                       7
<PAGE>
marketing resources of Lilly, Merck, Novartis and Warner-Lambert. The amount and
timing of resources dedicated by the Company's collaborative partners to their
respective collaborations with the Company are not within the Company's control.
Moreover, there can be no assurance that the interests of the Company will
continue to coincide with those of its collaborative partners, that some of the
Company's collaborative partners will not develop independently or with third
parties drugs that could compete with drugs of the types covered by the
collaborations, or that disagreements over rights or technology or other
proprietary interests will not occur.
 
    If any of the Company's collaborative partners breaches its agreement with
the Company, or fails to devote adequate resources to or conduct in a timely
manner its collaborative activities, the research programs under the applicable
Collaborative Agreement or the development and commercialization of drug
candidates subject to such collaboration would be materially adversely affected.
There can be no assurance that the Company's collaborations will be successful.
Further, there can be no assurance that the Company will be able to enter into
acceptable collaborative or licensing arrangements with other pharmaceutical
companies in the future, or that, if negotiated, such arrangements will be
successful. See "Business--Collaborative Arrangements."
 
HISTORY OF OPERATING LOSSES AND ACCUMULATED DEFICIT
 
    The Company has incurred significant operating losses since its inception in
January 1987. At June 30, 1997, the Company's accumulated deficit was $26.1
million. Losses have resulted principally from costs incurred in connection with
the Company's research and development activities and from general and
administrative costs associated with the Company's operations. The Company
expects to continue to incur substantial operating losses at least over the next
several years and expects losses to increase as the Company's research and
development efforts expand and its current collaborative arrangements expire.
The only revenues generated by the Company to date have resulted from payments
under the Collaborative Agreements, government grants under the Small Business
Innovative Research ("SBIR") program of the National Institutes of Health and
interest income. The Company's revenues, expenses and losses may fluctuate from
quarter to quarter and year to year. Research payments under the Lilly
Agreement, the Merck Agreement and the Novartis Agreements are scheduled to
expire in December 1998, November 1997 and August 1998, respectively, unless the
research programs under such agreements are extended by mutual agreement of the
Company and Lilly, Merck or Novartis. The Company does not expect to achieve
revenues or royalties from sales of drugs for a significant number of years, if
at all. The Company will not achieve revenues or royalties from drug sales
unless it or one of its collaborative partners successfully completes clinical
trials with respect to a drug candidate, obtains regulatory approvals for that
drug candidate and commercializes the resulting drug. Failure to achieve
significant revenue or profitable operations could impair the Company's ability
to sustain operations and there can be no assurance that the Company will ever
achieve significant revenues or profitable operations. See "Management's
Discussion and Analysis of Financial Condition and Results of Operations."
 
FUTURE CAPITAL NEEDS; UNCERTAINTY OF ADDITIONAL FUNDING
 
    The operation of the Company's business requires substantial capital
resources and such requirements are likely to increase in the future. The
Company's future financial requirements will depend on many factors, including
the continued progress of its research and development programs, the timing and
results of preclinical testing and clinical trials, if any, of its drug
candidates, the timing of regulatory approvals, if any, technological advances,
determinations as to the commercial potential of its or its collaborative
partners' proposed products and the status of competitive products. The
Company's capital requirements will also depend on the Company's ability to
establish and maintain collaborative arrangements with others and whether its
future collaborative partners provide research funding to the Company and are
responsible for all development activities, preclinical testing and regulatory
approvals and, if such approvals are
 
                                       8
<PAGE>
obtained, the manufacturing and marketing of products. In addition, such capital
requirements will depend on the time and expense associated with filing and, if
necessary, prosecuting and enforcing patent claims.
 
    The Company is exploring the possibility of entering into collaborative
arrangements which would enable it to retain ownership rights to certain
products. As envisioned by Synaptic, such collaborations would allow the Company
significant involvement in the development of potential products but could
require substantial financial participation by the Company in such development.
Accordingly, the cost to the Company of any such arrangement may be
significantly greater than the cost to it of participating in a royalty-based
collaboration.
 
    No assurance can be given that the Company's existing cash on hand and
marketable securities and funds it will receive under the Collaborative
Agreements and government grants, together with the net proceeds from the
Offering and interest income, will be sufficient. The Company expects that it
will, in the future, seek to raise additional funding from other sources,
including other collaborative partners and licensees, and through public or
private financings, including sales of equity or debt securities. Any such
collaborative or licensing arrangement could result in limitations on the
Company's ability to control the research and development of potential drugs and
the commercialization of resulting drugs, if any, as well as its profits
therefrom. Any such equity financing could result in dilution to the Company's
then existing stockholders. There can be no assurance that additional funds will
be available on favorable terms or at all, or that such funds, if raised, would
be sufficient to permit the Company to continue to conduct its operations. If
adequate funds are not available, the Company may be required to curtail
significantly or eliminate one or more of its receptor or drug discovery
programs. See "Use of Proceeds," "Management's Discussion and Analysis of
Financial Condition and Results of Operations--Liquidity and Capital Resources"
and "Business--Collaborative Arrangements."
 
UNCERTAINTY OF PATENT PROTECTION; DEPENDENCE ON PROPRIETARY TECHNOLOGY
 
    The Company's success depends, in part, on its ability to establish, protect
and enforce its proprietary rights relating to its technology. The Company's
policy is to seek, when appropriate, protection for its gene discoveries,
compound discoveries and other proprietary technology by filing patent
applications in the United States and in other countries. However, patent law as
it relates to inventions in the biotechnology field is still evolving, and
involves complex legal and factual questions for which legal principles are not
firmly established. Accordingly, there can be no assurance that patents will be
granted with respect to any of the Company's patent applications currently
pending in the United States or in other countries, or with respect to
applications filed by the Company in the future. The failure by the Company to
receive patents pursuant to the applications referred to herein and any future
applications could have a material adverse effect on the Company. See
"Business--Patents, Proprietary Technology and Trade Secrets."
 
    There is no clear policy involving the breadth of claims allowed in patents
or the degree of protection afforded thereunder. Accordingly, no firm
predictions can be made regarding the breadth or enforceability of claims
allowed in the patents that have been issued to the Company or in patents that
may be issued to the Company in the future and there can be no assurance that
claims in the Company's patents, either as initially allowed by the United
States Patent and Trademark Office or any of its non-United States counterparts
or as subsequently interpreted by courts inside or outside the United States,
will be sufficiently broad to protect the Company's proprietary rights.
 
    Also, there can be no assurance that the Company's patents or patent
applications will not be challenged by way of interference proceedings or
opposed by third parties or that the Company will not be required to participate
in interference proceedings or oppose the patents or patent applications of
third parties in order to protect its rights. Interference and opposition
proceedings can be expensive to prosecute and defend. One of the Company's
patent applications on file outside the United States is the subject of an
opposition filed by a pharmaceutical company and one of the Company's patent
applications on file in the United States is the subject of an interference
proceeding involving an issued patent of a third
 
                                       9
<PAGE>
party. In addition, the Company is seeking to provoke an interference by the
United States Patent and Trademark Office between another of its patent
applications and an issued patent of a third party. The Company also believes
that the United States Patent and Trademark Office may declare an interference
between another of its patent applications and a patent application of another
third party. There can be no assurance that the outcome of the pending
opposition and interference proceedings and the anticipated interference
proceedings will be favorable to the Company. In the event that the outcome of
the opposition proceeding were unfavorable to the Company, the Company would not
be issued the patent in the country in which the proceeding is taking place and
would not be able to prevent third parties from practicing the subject matter of
the opposed application in that country. Moreover, the opponent may seek to file
similar oppositions in other countries. In the event that the outcome of the
interference proceedings were unfavorable to the Company, the Company might not
be able to practice the subject matter of the relevant patent applications in
the United States. Accordingly, an unfavorable outcome in any such proceeding
would have an adverse effect on the Company. Even if the eventual outcome of the
pending opposition and interference proceedings and the anticipated interference
proceedings were favorable to the Company, the Company's participation in them
could result in substantial cost to the Company.
 
    Further, no assurance can be given that patents issued to the Company will
not be infringed, invalidated or circumvented by others, or that the rights
granted thereunder will be commercially valuable or will provide competitive
advantages to the Company and its present or future collaborative partners or
licensees. Moreover, because patent applications in the United States are
maintained in secrecy until patents issue, because patent applications in
certain other countries generally are not published until more than eighteen
months after they are filed and because publication of technological
developments in the scientific or patent literature often lags behind the date
of such developments, the Company cannot be certain that it was the first to
invent the subject matter covered by its patents or patent applications or that
it was the first to file patent applications for such inventions. The field of
gene discovery has become intensely competitive. A number of pharmaceutical
companies, biotechnology companies, universities and research institutions have
significantly expanded their gene discovery efforts in recent years and have
filed patent applications or received patents covering their gene discoveries.
Some of these applications or patents may be competitive with the Company's
applications or conflict in certain respects with claims made under the
Company's applications. There can be no assurance that, in the event of any
conflict, the Company will be in a priority position with respect to
inventorship on any of these applications.
 
    The commercial success of the Company also depends on the Company's ability
to operate without infringing patents and proprietary rights of third parties.
The Company is aware of a large number of patents and patent applications of
third parties that contain claims to genes that code for G protein-coupled
receptors and/or compounds that interact with G protein-coupled receptors.
Patents issued to others may preclude the Company from using or licensing its
technology or may preclude the Company or its collaborative partners from
commercializing drugs developed with the use of the Company's technology. The
Company has acquired licenses to use certain technologies covered by patents
owned by Stanford University and the University of California, jointly, and
Columbia University and may be required to obtain additional licenses to patents
or other proprietary rights of other parties in order to pursue its own
technologies. No assurance can be given that any such additional licenses would
be made available on terms acceptable to the Company, if at all. The failure to
obtain such licenses could result in delays in the Company's or its
collaborative partners' activities, including the development, manufacture or
sale of drugs requiring such licenses, or preclude such development, manufacture
or sale.
 
    In some cases, litigation or other proceedings may be necessary to assert
infringement claims against others, to defend against claims of infringement, to
enforce patents issued to the Company, to protect trade secrets, know-how or
other intellectual property rights owned by the Company, or to determine the
scope and validity of the proprietary rights of third parties. Such litigation
could result in substantial costs to and diversion of resources by the Company
and could have a material adverse effect on the Company. There can be no
assurance that any of the Company's patents would ultimately be held valid or
that efforts
 
                                       10
<PAGE>
to defend any of its patents, trade secrets, know-how or other intellectual
property rights would be successful. An adverse outcome in any such litigation
or proceeding could subject the Company to significant liabilities, require the
Company to cease using the subject technology or require the Company to license
the subject technology from the third party, all of which could have a material
adverse effect on the Company's business.
 
    In addition to patent protection, the Company relies upon trade secrets,
proprietary know-how and continuing technological advances to develop and
maintain its competitive position. To maintain the confidentiality of its trade
secrets and proprietary information, the Company requires its employees,
consultants and collaborative partners to execute confidentiality agreements
upon the commencement of their relationships with the Company. In the case of
employees, the agreements also provide that all inventions resulting from work
performed by them while in the employ of the Company will be the exclusive
property of the Company. There can be no assurance, however, that these
agreements will not be breached, that the Company would have adequate remedies
in the event of any such breach or that the Company's trade secrets or
proprietary information will not otherwise become known or developed
independently by others. See "Business--Collaborative Arrangements" and
"Business--Patents, Proprietary Technology and Trade Secrets."
 
SUBSTANTIAL COMPETITION; RISK OF TECHNOLOGICAL OBSOLESCENCE
 
    The Company operates in a field in which new developments occur and are
expected to continue to occur at a rapid pace. Competition from biotechnology
and pharmaceutical companies, joint ventures, academic and other research
institutions and others is intense and is expected to increase. The Company
believes that the elements of its human receptor-targeted drug design technology
are currently employed by many other pharmaceutical and biotechnology companies
in their drug discovery efforts. Moreover, there are other companies with drug
discovery programs at least some of the objectives of which are the same as or
similar to those of the Company. The Company is aware of many pharmaceutical and
biotechnology companies that are engaged in efforts to develop compounds that
interact with G protein-coupled receptors subtypes, including receptor subtypes
with which the Company is working. Many of the Company's competitors are large
biotechnology companies and multinational pharmaceutical companies who may
employ in such activities greater financial and other resources, including
larger research and development staffs and more extensive marketing and
manufacturing organizations, than the Company or its collaborative partners. See
"Business--Competition."
 
    The Company also expects to encounter significant competition with respect
to the drugs that it and its collaborative partners plan to develop. Companies
that complete clinical trials, obtain required regulatory approvals and commence
commercial sales of their drugs before their competitors may achieve a
significant competitive advantage. In order to compete successfully, the
Company's goal is to obtain patent protection for its gene discoveries and drug
discovery systems and to make these systems available to pharmaceutical
companies through collaborative and licensing arrangements for use in
discovering drugs for major markets which have historically been difficult to
address using the traditional approach to drug discovery. There can be no
assurance, however, that the Company will obtain patents covering its technology
that protect it against competitors. Moreover, there can be no assurance that
the Company's competitors will not succeed in developing technologies that
circumvent the Company's technology or that such competitors will not succeed in
developing technologies and drugs that are more effective than those developed
by the Company and its collaborative partners or that would render technology or
drugs of the Company and its collaborators less competitive or obsolete. In
addition, there can be no assurance that competitors of the Company will not
obtain regulatory approvals of their drugs more rapidly than the Company and its
collaborative partners, thereby rendering the Company's and its collaborative
partners' drugs noncompetitive or obsolete. Moreover, there can be no assurance
that the Company's competitors will not obtain patent protection or other
intellectual property rights that would limit the Company's or its collaborative
partners' ability to use the Company's technology or commercialize its or their
drugs. See "Business--Competition" and "Business--Patents, Proprietary
Technology and Trade Secrets."
 
                                       11
<PAGE>
UNCERTAINTIES RELATED TO CLINICAL TRIALS
 
    Before obtaining required regulatory approvals for the commercial sale of
each product under development, the Company or its collaborators must
demonstrate through preclinical studies and clinical trials that such product is
safe and efficacious for use. The results of preclinical studies and initial
clinical trials are not necessarily predictive of results that will be obtained
from large-scale clinical trials, and there can be no assurance that clinical
trials of any product under development will demonstrate the safety and efficacy
of such product or will result in a marketable product. The safety and efficacy
of a therapeutic product under development by the Company or its collaborative
partners must be supported by extensive data from clinical trials. A number of
companies have suffered significant setbacks in advanced clinical trials,
despite promising results in earlier trials. The failure to demonstrate
adequately the safety and efficacy of a therapeutic drug under development would
delay or prevent regulatory approval of the product and could have a material
adverse effect on the Company. In addition, the United States Food and Drug
Administration (the "FDA") may require additional clinical trials, which could
result in increased costs and significant development delays.
 
    The rate of completion of clinical trials of the Company's or its
collaborative partners' products is dependent upon, among other factors,
obtaining adequate clinical supplies and the rate of patient accrual. Patient
accrual is a function of many factors, including the size of the patient
population, the proximity of patients to clinical sites and the eligibility
criteria for the trial. Delays in planned patient enrollment in clinical trials
may result in increased costs, program delays or both, which could have a
material adverse effect on the Company. In addition, the Company's current
collaborative partners have the right to control the planning and execution of
product development and clinical programs, and there can be no assurance that
such partners will conduct such programs in accordance with schedules that are
satisfactory to the Company. There can be no assurance that, if clinical trials
are completed, the Company or its collaborative partners will submit New Drug
Applications ("NDAs") with respect to any potential products or that any such
application will be reviewed and approved by the FDA in a timely manner, if at
all. See "Business -- Government Regulation."
 
STRINGENT GOVERNMENT REGULATION; NO ASSURANCE OF REGULATORY AGENCY APPROVAL
 
    The development, manufacturing and marketing of drugs developed through the
use of the Company's technology are subject to regulation by numerous Federal,
state and local governmental authorities in the United States, the principal one
of which is the FDA, and by similar agencies in other countries in which drugs
developed through the use of the Company's technology may be tested and marketed
(each of such Federal, state and local and other authorities and agencies, a
"Regulatory Agency"). The FDA and comparable Regulatory Agencies in other
countries impose mandatory procedures and standards for the conduct of certain
preclinical testing and clinical trials and the production and marketing of
drugs for human therapeutic use. Product development and approval of a new drug
are likely to take many years and involve the expenditure of substantial
resources.
 
    The steps required by the FDA before new drugs may be marketed in the United
States include: (i) preclinical studies; (ii) the submission to the FDA of a
request for authorization to conduct clinical trials on an investigational new
drug (an "IND"); (iii) adequate and well-controlled clinical trials to establish
the safety and efficacy of the drug for its intended use; (iv) submission to the
FDA of an NDA; and (v) review and approval of the NDA by the FDA before the drug
may be shipped or sold commercially. See "Business--Government Regulation."
 
    In the United States in particular, timetables for the various phases of
clinical trials and NDA approval cannot be predicted with any certainty. The
Company, its collaborative partners or the FDA may suspend clinical trials at
any time if it is believed that individuals participating in such trials are
being exposed to unacceptable health risks. Even assuming that clinical trials
are completed and that an NDA is submitted to the FDA, there can be no assurance
that the NDA will be reviewed by the FDA in a timely
 
                                       12
<PAGE>
manner or that once reviewed, the NDA will be approved. The approval process is
affected by a number of factors, including the severity of the targeted
indications, the availability of alternative treatments and the risks and
benefits demonstrated in clinical trials. The FDA may deny an NDA if applicable
regulatory criteria are not satisfied, or may require additional testing or
information with respect to the investigational drug. Data obtained from
preclinical and clinical activities are susceptible to varying interpretations
which could also delay, limit or prevent Regulatory Agency approval. Even if
initial FDA approval is obtained, further studies, including post-market
studies, may be required in order to provide additional data on safety and will
be required in order to gain approval for the use of a product as a treatment
for clinical indications other than those for which the product was initially
tested. The FDA will also require post-market reporting and may require
surveillance programs to monitor the side effects of the drug. Results of
post-marketing programs may limit or expand the further marketing of the drug.
Further, if there are any modifications to the drug, including changes in
indication, manufacturing process or labeling, an NDA supplement may be required
to be submitted to the FDA. Finally, delays or rejections may be encountered
based upon changes in Regulatory Agency policy during the period of drug
development and/ or the period of review of any application for Regulatory
Agency approval for a compound. Moreover, because the Company's present
collaborative partners are, and its future collaborative partners may be,
responsible for preclinical testing, clinical trials, regulatory approvals,
manufacturing and commercialization of drugs, the ability to obtain and the
timing of regulatory approvals are not, and in the future may not be, within the
control of the Company. There can be no assurance that the regulatory framework
described above will not change or that additional regulations will not arise
that may affect approval of a potential drug.
 
    Each manufacturing establishment for new drugs is required to receive some
form of approval by the FDA. Among the conditions for such approval is the
requirement that the prospective manufacturer's quality control and
manufacturing procedures conform to the FDA's Good Manufacturing Practices
("GMP"), which must be followed at all times. In complying with standards set
forth in these regulations, manufacturers must continue to expend time, monies
and effort in the area of production and quality control to ensure full
technical compliance. Manufacturing establishments, both foreign and domestic,
are also subject to inspections by or under the authority of the FDA and may be
subject to inspections by foreign and other Federal, state or local agencies.
 
    Prior to the commencement of marketing a product in other countries,
approval by the Regulatory Agencies in such countries is required, regardless of
whether FDA approval has been obtained for such product. The requirements
governing the conduct of clinical trials and product approvals vary widely from
country to country, and the time required for approval may be longer or shorter
than the time required for FDA approval. Although there are some procedures for
unified filings for certain European countries, in general, each country has its
own procedures and requirements.
 
    Delays in obtaining Regulatory Agency approvals could adversely affect the
marketing of any drugs developed by the Company or its collaborative partners,
impose costly procedures upon the Company's or its collaborative partners'
activities, diminish any competitive advantages that the Company or its
collaborative partners may attain and adversely affect the Company's ability to
receive revenues or royalties. There can be no assurance that, even after such
time and expenditures, Regulatory Agency approvals will be obtained for any
compounds developed by or in collaboration with the Company. Moreover, even if
Regulatory Agency approval for a compound is granted, such approval may entail
limitations on the indicated uses for which it may be marketed. Further,
approved drugs and their manufacturers are subject to continual review, and
discovery of previously unknown problems with a drug or its manufacturer may
result in restrictions on such drug or manufacturer, including withdrawal of the
drug from the market. Regulatory Agency approval of prices is required in many
countries and may be required for the marketing of any drug developed by the
Company or its collaborative partners.
 
                                       13
<PAGE>
DEPENDENCE ON THIRD-PARTY REIMBURSEMENT FOR FUTURE DRUGS AND HEALTH CARE REFORM
 
    The Company's commercial success will be heavily dependent upon the
availability of reimbursement for the use of drugs developed by the Company or
its collaborative partners from third-party payors, such as government health
administration authorities, private health care insurers, health maintenance
organizations, pharmacy benefits management companies and other organizations.
Third-party payors are increasingly challenging the prices charged for health
care drugs and may require additional cost-benefit analysis data from the
Company or its collaborative partners in order to demonstrate the
cost-effectiveness of its or its collaborative partners' drugs. There can be no
assurance that the Company or its collaborative partners will be able to provide
such data in order to gain market acceptance of such drugs with respect to
pricing and reimbursement.
 
    In the United States, the Company expects that there will continue to be a
number of Federal and state proposals to implement government control of pricing
and profitability of prescription pharmaceuticals. In addition, increasing
emphasis on managed health care will continue to put pressure on such pricing.
Cost control initiatives could decrease the price that the Company or any of its
collaborative partners or other licensees receives for any drugs it may discover
or develop in the future and, by preventing the recovery of potentially
substantial development costs and the achievement of an appropriate profit
margin, could have a material adverse effect on the Company. Further, to the
extent that cost control initiatives have a material adverse effect on the
Company's collaborative partners, the Company's ability to commercialize its
products and to realize royalties may be adversely affected. Furthermore,
Federal and state regulations govern or influence the reimbursement to health
care providers of fees and capital equipment costs in connection with medical
treatment of certain patients. If any actions are taken by Federal and/or state
governments, such actions could adversely affect the prospects for sales of the
Company's drugs. There can be no assurance that action taken by Federal and/or
state governments, if any, with regard to health care reform will not have a
material adverse effect on the Company. See "Business -- Government Regulation."
 
LACK OF MANUFACTURING EXPERIENCE; RELIANCE ON CONTRACT MANUFACTURERS
 
    The Company currently has no manufacturing facilities and relies on its
collaborative partners or other manufacturers to produce its compounds for
research and development, preclinical and clinical purposes. The products under
development by the Company and its collaborative partners have never been
manufactured on a commercial scale and there can be no assurance that such
products can be manufactured at a cost or in quantities necessary to make them
commercially viable. If the Company were unable to contract for a sufficient
supply of its compounds on acceptable terms, or if it should encounter delays or
difficulties in its relationships with manufacturers, the Company's preclinical
and clinical testing schedule would be delayed, resulting in delay in the
submission of products for regulatory approval or the market introduction and
subsequent sales of such products, which could have a material adverse effect on
the Company. Moreover, manufacturers that the Company may use must adhere to
current Good Manufacturing Practices regulations enforced by the FDA through its
facilities inspection program. If these facilities cannot pass a pre-approval
plant inspection, the FDA pre-market approval of the products will not be
granted.
 
LACK OF SALES AND MARKETING CAPABILITY
 
    The creation of infrastructure to commercialize pharmaceutical products is a
difficult, expensive and time-consuming process. Synaptic currently has no sales
or marketing capability. To market directly any product it may develop, the
Company will need to establish a marketing and sales force with technical
expertise and distribution capability or contract with other pharmaceutical
and/or health care companies with distribution systems and direct sales forces.
There can be no assurance that the Company will be able to establish direct or
indirect sales and distribution capabilities or be successful in gaining market
acceptance for licensing arrangements. To the extent that the Company enters
into co-promotion or
 
                                       14
<PAGE>
licensing arrangements, any revenues received by the Company will be dependent
on the efforts of third parties, and there can be no assurance that any such
efforts will be successful.
 
PRODUCT LIABILITY AND INSURANCE RISKS
 
    Synaptic's business exposes it to potential product liability risks which
are inherent in the testing, manufacturing and marketing of human therapeutic
products. Certain of the compounds the Company or any of its collaborative
partners is investigating could be injurious to humans. Synaptic does not
currently have any product liability insurance. While the Company will, if
appropriate, seek to obtain such insurance with respect to drugs developed by it
or its collaborative partners, there can be no assurance that Synaptic will be
able to obtain such insurance on acceptable terms or that such insurance will
provide adequate coverage against potential liabilities. To the extent that
product liability insurance, if available, does not cover potential claims, the
Company will be required to self-insure the risks associated with such claims. A
successful product liability claim or series of claims brought against the
Company could have a material adverse effect on the Company.
 
DEPENDENCE ON KEY PERSONNEL
 
    The Company is highly dependent on its management and scientific staff. Loss
of the services of any key individual could have an adverse effect on the
Company. The Company believes that its future success will depend, in part, on
its ability to attract and retain highly talented managerial and scientific
personnel and consultants. The Company faces intense competition for such
personnel from, among others, biotechnology and pharmaceutical companies, as
well as academic and other research institutions. There can be no assurance that
it will be able to attract and retain the personnel it requires on acceptable
terms. See "Management."
 
USE OF HAZARDOUS MATERIALS -- POTENTIAL LIABILITY AND STRINGENT GOVERNMENT
  REGULATIONS
 
    As with many biotechnology and pharmaceutical companies, the Company's
activities involve the use of radioactive compounds and hazardous materials. The
Company is subject to local, state and Federal laws and regulations relating to
occupational safety, laboratory practices, the use, handling and disposition of
radioactive materials, environmental protection and hazardous substance control.
Although the Company believes that its safety procedures for handling and
disposing of radioactive compounds and other hazardous materials used in its
research and development activities comply with the standards prescribed by
Federal, state and local regulations, the risk of accidental contamination or
injury from these materials cannot be completely eliminated. In the event of any
such accident, the Company could be held liable for any damages that result and
any such liability could exceed the resources of the Company. See "Business--
Government Regulation."
 
VOLATILITY OF STOCK PRICE
 
    The market prices and trading volumes for securities of emerging companies,
like Synaptic, have historically been highly volatile and have experienced
significant fluctuations unrelated to the operating performance of such
companies. Future announcements concerning the Company or its competitors may
have a significant impact on the market price of the Common Stock. Such
announcements might include the results of research, development testing,
technological innovations, new commercial products, government regulation,
developments concerning proprietary rights, litigation or public concern as to
the safety of the products. See "Price Range of Common Stock."
 
EFFECT OF STOCKHOLDERS' RIGHTS PLAN AND CERTAIN ANTI-TAKEOVER PROVISIONS
 
    Certain provisions of the Company's Amended and Restated Certificate of
Incorporation (the "Restated Certificate") and Amended and Restated By-laws (the
"By-laws"), as well as provisions of the
 
                                       15
<PAGE>
Delaware General Corporation Law, could have anti-takeover effects on the
Company by deterring hostile takeovers or delaying or preventing changes in
control or management of the Company. In November 1995, the Company adopted a
stockholders' rights plan (the "Rights Plan") pursuant to which one right (the
"Right") to purchase 1/1000th of a share of Series A Junior Participating
Preferred Stock of the Company (the "Series A Preferred Stock") was distributed
as a dividend with respect to each outstanding share of the Common Stock. One
additional Right is deemed delivered with each share of Common Stock
subsequently issued by the Company, including shares issued and sold in the
Offering. The Rights become exercisable upon the tenth business day following
(i) the acquisition by a person or group of 15% or more of the outstanding
Common Stock or (ii) the announcement by a person or group of an intention to
acquire through tender or exchange offer 15% or more of the outstanding Common
Stock. The Rights Plan may discourage certain types of transactions involving an
actual or potential change in control of the Company which could be beneficial
to the Company or its stockholders. See "Description of Capital
Stock--Stockholders' Rights Plan."
 
    In addition, the Restated Certificate provides for a Board of Directors of
not less than three members, divided into three classes of approximately equal
size, with each class to be elected for a three-year term at the annual meeting
of stockholders at which such class of directors' term expires. The exact number
of directors is fixed by the Board of Directors. Currently, there are eight
seats on the Board of Directors, one of which is vacant. Accordingly, only those
directors in one class may be changed in any one year, and it would require two
years to change a majority of the Board of Directors. Such system of electing
directors may have the effect of maintaining the continuity of management and,
thus, make it more difficult for the stockholders of the Company to change the
majority of directors. A director of the Company may be removed only with cause,
and only with the vote of the holders of at least 60% of the outstanding stock
entitled to vote thereon. Any amendment or repeal of any or all of the
provisions of the Restated Certificate which relate to the classified Board of
Directors or the removal of directors would require the affirmative vote of at
least 80% of the outstanding stock entitled to vote thereon and a majority of
the Board of Directors.
 
    The Restated Certificate and By-laws require approval of a majority of the
Board of Directors in order for a special meeting of stockholders to be called,
prohibit the stockholders from taking action by written consent and require
advance notice by stockholders of an intention to nominate persons for election
to the Board of Directors. In addition, the Restated Certificate authorizes the
Board of Directors to issue Preferred Stock without stockholder approval and
upon such terms as the Board of Directors may determine. The rights of the
holders of Common Stock will be subject to, and could be adversely affected by,
the rights of the holders of any Preferred Stock issued in the future, including
the Series A Preferred Stock. The provisions of the Restated Certificate and the
By-laws described above could have the effect of depriving the owners of shares
in the Company of opportunities to sell their shares at a premium over
prevailing market prices by discouraging a third party from seeking to obtain
control of the Company in a tender offer or similar transaction. The overall
effect of these provisions is to render more difficult the accomplishment of a
merger or the assumption of control by a principal stockholder. See "Description
of Capital Stock--Delaware Law, Charter and By-law Provisions."
 
POTENTIAL ADVERSE MARKET IMPACT OF SHARES ELIGIBLE FOR FUTURE SALE
 
    Sales of a substantial number of shares of the Common Stock in the public
market after the Offering could adversely affect the market price of the Common
Stock. Upon completion of the Offering, the Company will have outstanding
10,149,997 shares of Common Stock. Of those shares, approximately       million,
including the 2,500,000 million shares offered hereby, but excluding shares
subject to contractual restrictions discussed below or held by affiliates of the
Company, will be immediately eligible for resale in the public market without
restriction. The holders of approximately 2.2 million shares also have
registration rights which have been waived in connection with the Offering.
Pursuant to agreements with the Underwriters, the holders of approximately
      million of the shares of the Common Stock
 
                                       16
<PAGE>
which will be outstanding after the Offering (and holders of approximately
      million shares of Common Stock issuable upon exercise of outstanding
options) have agreed not to sell any shares of Common Stock for a period of at
least 90 days after the date of the Prospectus without the prior written consent
of Bear, Stearns & Co. Inc., acting alone, or the representatives of the
Underwriters, acting jointly. See "Underwriting."
 
ABSENCE OF CASH DIVIDENDS; DILUTION
 
    No cash dividends have been paid on the Common Stock to date, and Synaptic
does not anticipate paying cash dividends in the foreseeable future. See
"Dividend Policy." The Offering price is substantially higher than the net
tangible book value per share of Common Stock prior to the Offering. Investors
purchasing shares of Common Stock in the Offering will, therefore, incur
immediate and substantial dilution. Additional dilution is likely to occur upon
the exercise of options and warrants granted by the Company. See "Dilution."
 
               SPECIAL NOTE REGARDING FORWARD-LOOKING STATEMENTS
 
    Certain statements contained or incorporated by reference in this
Prospectus, including without limitation, statements containing the words
"believes," "anticipates," "expects" and words of similar import, constitute
"forward-looking statements" within the meaning of the Private Securities
Litigation Reform Act of 1995 (the "Reform Act"). Such forward-looking
statements involve unknown and known risks, uncertainties and other factors
which may cause the actual results, performance or achievements of Synaptic, or
industry results, to be materially different from any future results,
performance or achievements expressed or implied by such forward-looking
statements. Such factors include, among others, the following: early stage of
product development; technological uncertainty; dependence on collaborative
partners for development, regulatory approvals, manufacturing, marketing and
other resources; history of operating losses and accumulated deficit; future
capital needs; uncertainty of additional funding; uncertainty of patent
protection; dependence on proprietary technology; substantial competition; risk
of technological obsolescence; uncertainties related to clinical trials;
stringent government regulation; no assurance of regulatory agency approval;
dependence on third party reimbursement for future drugs and health care reform;
lack of manufacturing experience; reliance on contract manufacturers; lack of
sales and marketing capability; product liability and insurance risks;
dependence on key personnel; use of hazardous material--potential liability and
stringent government regulation; volatility of stock price; effect of
stockholders' rights plan and certain anti-takeover provisions; potential
adverse market impact on shares eligible for future sale; absence of cash
dividends; dilution; and other factors referenced in this Prospectus. Certain of
these factors are discussed in more detail elsewhere in this Prospectus,
including without limitation, under the captions "Prospectus Summary," "Risk
Factors," "Dilution," "Management's Discussion and Analysis of Financial
Condition and Results of Operations" and "Business." Given these uncertainties,
prospective investors are cautioned not to place undue reliance on such
forward-looking statements. Synaptic disclaims any obligation to update any such
factors or to publicly announce the result of any revisions to any of the
forward-looking statements contained herein to reflect future events or
developments.
 
                                       17
<PAGE>
                                USE OF PROCEEDS
 
    The net proceeds to the Company from the sale of the 2,500,000 shares of
Common Stock offered hereby are estimated to be $34,456,250 ($39,699,688 if the
Underwriters' over-allotment option is exercised in full), assuming an Offering
price of $14.875 (the last trade price of the Common Stock on Nasdaq on October
7, 1997), after deducting estimated underwriting discounts and commissions and
other estimated Offering expenses of the Company.
 
    The Company expects to use the net proceeds, including the interest thereon,
for general corporate purposes, including: (i) the funding of future research
and development programs, which may include preclinical and clinical development
activities conducted in connection with drug candidates identified in internal
programs or collaborative programs, if any, in which the Company retains certain
ownership and/ or marketing rights; (ii) the expansion of the Company's
technology; (iii) the acquisition and in-licensing of technologies that are
complementary to the Company's technology; (iv) capital expenditures associated
with the foregoing; and (v) working capital.
 
    The amounts actually expended for each purpose may vary significantly
depending upon numerous factors, including: the pace of scientific progress in
the Company's research and development programs; the magnitude of programs
resulting from the research; the Company's success in establishing collaborative
arrangements in which it retains ownership or marketing rights with respect to
products resulting from such arrangements; the Company's ability to establish
additional royalty-based collaborative arrangements, the scope and results of
pre-clinical tests and clinical trials conducted by the Company or its
collaborative partners; the time and costs involved in obtaining regulatory
approvals for potential products; the Company's or its collaborative partners'
ability to obtain such approvals; the costs associated with preparing, filing,
prosecuting, maintaining and enforcing patent claims; and competing
technological and market developments. In addition, expenditures will also
depend upon the availability of additional financing and other factors. The
Company believes that its cash on hand and marketable securities and funds it
will receive from its collaborative partners and from SBIR grants, together with
the net proceeds of the Offering and interest income, will be adequate to
satisfy its anticipated capital requirements through the year 2000.
 
    Pending application of the net proceeds of the Offering as described above,
the Company plans to invest such proceeds principally in United States
government and investment-grade corporate debt securities.
 
                                       18
<PAGE>
                          PRICE RANGE OF COMMON STOCK
 
    The Common Stock has traded on Nasdaq under the symbol "SNAP" since the
Company's initial public offering on December 13, 1995. The following table sets
forth the high and low last trade prices for the Common Stock on Nasdaq for the
periods indicated.
 
<TABLE>
<CAPTION>
                                                                                                       PRICE RANGE
                                                                                                   --------------------
<S>                                                                                                <C>        <C>
                                                                                                     HIGH        LOW
                                                                                                   ---------  ---------
YEAR ENDED DECEMBER 31, 1995:
  4th Quarter (December 13 through December 31)..................................................  $  13 1/2  $  12 1/2
YEAR ENDED DECEMBER 31, 1996:
  1st Quarter....................................................................................  $      20  $  12 1/2
  2nd Quarter....................................................................................     17 3/4     12 1/4
  3rd Quarter....................................................................................         14      9 1/2
  4th Quarter....................................................................................         13     10 1/2
YEAR ENDING DECEMBER 31, 1997
  1st Quarter....................................................................................  $  15 1/2  $  12 1/4
  2nd Quarter....................................................................................         14     10 3/8
  3rd Quarter....................................................................................     15 5/8     12 3/8
  4th Quarter (through October 7)................................................................     15 1/2     13 3/4
</TABLE>
 
- ------------------------
 
    On October 7, 1997, the last trade price of the Common Stock on Nasdaq was
$14.875 per share. As of September 30, 1997, there were approximately 1,070
holders of record of the Common Stock.
 
                                DIVIDEND POLICY
 
    The Company has never declared any cash dividends on its capital stock and
does not intend to pay any cash dividends in the foreseeable future. The Company
currently intends to retain its earnings, if any, to finance future growth. See
"Risk Factors--Absence of Cash Dividends; Dilution."
 
                                       19
<PAGE>
                                    DILUTION
 
    The net tangible book value of the Common Stock at June 30, 1997, was $35.6
million or $4.65 per share. Net tangible book value per share represents the
amount of total tangible assets of the Company less total liabilities, divided
by 7,646,579, the number of shares of Common Stock outstanding as of June 30,
1997. After giving effect to the sale of the 2,500,000 shares of Common Stock
offered hereby at an assumed Offering price of $14.875 per share (the last trade
price of the Common Stock on Nasdaq on October 7, 1997) and after deducting
estimated underwriting discounts and commissions and other estimated Offering
expenses, the adjusted net tangible book value per share at June 30, 1997, would
have been $6.90. This represents an immediate increase in net tangible book
value per share of $2.25 to existing stockholders and an immediate dilution per
share of $7.98 to new investors purchasing shares in the Offering. The following
table illustrates the per share dilution described above:
 
<TABLE>
<S>                                                            <C>        <C>
Assumed Offering price per share.............................             $   14.88
  Net tangible book value per share at June 30, 1997.........  $    4.65
  Increase per share attributable to the Offering............       2.25
                                                               ---------
Adjusted net tangible book value per share after the
  Offering...................................................                  6.90
                                                                          ---------
Dilution per share to new investors..........................             $    7.98
                                                                          ---------
                                                                          ---------
</TABLE>
 
    The foregoing table excludes (a) 717,364 shares of Common Stock issuable at
June 30, 1997, upon the exercise of options outstanding as of such date under
the Company's stock option plans at a weighted average exercise price per share
of $8.98 and (b) 144,344 shares of Common Stock reserved for issuance upon the
exercise of the warrants outstanding as of such date at a price per share of
$9.50. To the extent that certain of these options and warrants are exercised,
there could be further dilution to new investors. See "Capitalization" and
"Description of Capital Stock--Warrants."
 
                                       20
<PAGE>
                                 CAPITALIZATION
 
    The following table sets forth the capitalization of the Company, on an
unaudited basis, at June 30, 1997, (i) on an actual basis, and (ii) as adjusted
to reflect the sale of the 2,500,000 shares of Common Stock offered hereby at an
assumed Offering price of $14.875 per share (the last trade price of the Common
Stock on Nasdaq on October 7, 1997) and the receipt of the estimated net
proceeds of such sale. See "Use of Proceeds." This table should be read in
conjunction with the Company's financial statements, including the notes
thereto, included elsewhere herein.
<TABLE>
<CAPTION>
                                                                                                JUNE 30, 1997
                                                                                            ----------------------
<S>                                                                                         <C>        <C>
                                                                                             ACTUAL    AS ADJUSTED
                                                                                            ---------  -----------
 
<CAPTION>
                                                                                                (in thousands)
<S>                                                                                         <C>        <C>
Cash, cash equivalents and marketable securities(1).......................................  $  31,098   $  65,554
                                                                                            ---------  -----------
                                                                                            ---------  -----------
Current portion of capital lease obligation...............................................  $      45   $      45
                                                                                            ---------  -----------
                                                                                            ---------  -----------
Stockholders' equity:
    Preferred Stock, $0.01 par value; 1,000,000 shares authorized; no shares issued or
      outstanding actual and as adjusted..................................................     --          --
    Common Stock, $0.01 par value; 25,000,000 shares authorized and 7,646,579 shares
      issued and outstanding; and 10,146,579 shares issued and outstanding as
      adjusted(2).........................................................................  $      76   $     101
    Additional paid-in capital............................................................     63,247      97,678
    Net unrealized gains (losses) on securities...........................................          5           5
    Deferred compensation.................................................................       (224)       (224)
    Accumulated deficit...................................................................    (26,064)    (26,064)
                                                                                            ---------  -----------
      Total stockholders' equity..........................................................     37,040      71,496
                                                                                            ---------  -----------
        Total capitalization..............................................................  $  37,040   $  71,496
                                                                                            ---------  -----------
                                                                                            ---------  -----------
</TABLE>
 
- ------------------------
 
(1) Does not include $712,000 in restricted cash.
 
(2) As of June 30, 1997. Excludes (a) 717,364 shares of Common Stock issuable
    upon the exercise of stock options outstanding under the Company's stock
    option plans (at a weighted average exercise price per share of $8.98), (b)
    900,638 shares of Common Stock available for future grants under such plans
    and (c) 144,344 shares of Common Stock issuable upon the exercise of
    outstanding warrants at a price per share of $9.50.
 
                                       21
<PAGE>
                            SELECTED FINANCIAL DATA
 
    The selected financial data set forth below with respect to the Company's
statements of operations for each of the years in the three-year period ended
December 31, 1996, and with respect to the balance sheets at December 31, 1995
and 1996, are derived from the audited financial statements of the Company that
have been audited by Ernst & Young LLP, independent auditors, which are included
elsewhere in this Prospectus. The statements of operations data for the years
ended December 31, 1992 and 1993, and the balance sheet data at December 31,
1992, 1993 and 1994 are derived from audited financial statements of the Company
not included in this Prospectus. The selected financial data as of June 30,
1997, and for the six-month periods ended June 30, 1996 and 1997, are derived
from unaudited financial statements and include all adjustments, consisting of
normal recurring accruals, which the Company considers necessary for a fair
presentation of the financial position and the results of operations for these
periods. Results of operations for the six months ended June 30, 1997, are not
necessarily indicative of results of operations to be expected for the fiscal
year ending December 31, 1997, or any other interim period for the full year.
The data presented below should be read in conjunction with the Company's
financial statements and related notes thereto and "Management's Discussion and
Analysis of Financial Condition and Results of Operations" and other information
included elsewhere in this Prospectus.
<TABLE>
<CAPTION>
                                                                                                                    UNAUDITED
                                                                                                                       SIX
                                                                                                                     MONTHS
                                                                                                                      ENDED
                                                                           YEARS ENDED DECEMBER 31,                 JUNE 30,
                                                             -----------------------------------------------------  ---------
                                                               1992       1993       1994       1995       1996       1996
                                                             ---------  ---------  ---------  ---------  ---------  ---------
<S>                                                          <C>        <C>        <C>        <C>        <C>        <C>
                                                                        (in thousands, except net loss per share)
STATEMENT OF OPERATIONS DATA:
Revenues:
  Contract revenue.........................................  $   2,537  $   2,789  $   4,763  $   7,670  $   6,943  $   3,422
  License Revenue..........................................        300      5,713         --         --      2,000         --
  Grant revenue............................................        769        292        280        307        538        140
                                                             ---------  ---------  ---------  ---------  ---------  ---------
    Total revenues.........................................      3,606      8,794      5,043      7,977      9,481      3,562
Expenses:
  Research and development.................................      6,760      9,128      9,309      9,863     11,337      5,484
  General and administrative...............................      1,781      1,625      1,912      2,215      2,982      1,364
                                                             ---------  ---------  ---------  ---------  ---------  ---------
    Total operating expenses...............................      8,541     10,753     11,221     12,078     14,319      6,848
                                                             ---------  ---------  ---------  ---------  ---------  ---------
Loss from operations.......................................     (4,935)    (1,959)    (6,178)    (4,101)    (4,838)    (3,286)
Other income, net(1).......................................        362        409        651        734      2,205      1,127
                                                             ---------  ---------  ---------  ---------  ---------  ---------
Net loss...................................................  $  (4,573) $  (1,550) $  (5,527) $  (3,367) $  (2,633) $  (2,159)
                                                             ---------  ---------  ---------  ---------  ---------  ---------
                                                             ---------  ---------  ---------  ---------  ---------  ---------
Net loss per share(2)......................................                                   $   (4.76) $   (0.35) $   (0.29)
                                                                                              ---------  ---------  ---------
                                                                                              ---------  ---------  ---------
Shares used in computing net loss per share................                                         707      7,578      7,535
 
<CAPTION>
 
                                                               1997
                                                             ---------
<S>                                                          <C>
 
STATEMENT OF OPERATIONS DATA:
Revenues:
  Contract revenue.........................................  $   5,310
  License Revenue..........................................         --
  Grant revenue............................................        242
                                                             ---------
    Total revenues.........................................      5,552
Expenses:
  Research and development.................................      6,691
  General and administrative...............................      1,922
                                                             ---------
    Total operating expenses...............................      8,613
                                                             ---------
Loss from operations.......................................     (3,061)
Other income, net(1).......................................        966
                                                             ---------
Net loss...................................................  $  (2,095)
                                                             ---------
                                                             ---------
Net loss per share(2)......................................  $   (0.27)
                                                             ---------
                                                             ---------
Shares used in computing net loss per share................      7,640
</TABLE>
 
<TABLE>
<CAPTION>
                                                                                                                      UNAUDITED
                                                                                                                        AS OF
                                                                               AS OF DECEMBER 31,                     JUNE 30,
                                                              -----------------------------------------------------  -----------
                                                                1992       1993       1994       1995       1996        1997
                                                              ---------  ---------  ---------  ---------  ---------  -----------
<S>                                                           <C>        <C>        <C>        <C>        <C>        <C>
                                                                                        (in thousands)
BALANCE SHEET DATA:
Cash, cash equivalents and marketable securities(3).........  $   2,013  $  12,285  $  13,592  $  36,018  $  34,684   $  31,098
Working capital.............................................      1,178      8,562      9,590     34,727     26,055      28,106
Total assets................................................      5,988     19,754     20,024     40,913     40,355      37,976
Long-term capital lease obligations.........................        496        383        259        106         --          --
Convertible redeemable preferred stock......................     14,870     28,906     36,199         --         --          --
Accumulated deficit.........................................    (10,892)   (12,442)   (17,969)   (21,336)   (23,970)    (26,064)
Stockholders' (deficiency) equity...........................    (10,571)   (11,929)   (17,592)    38,669     39,040      37,040
</TABLE>
 
- ------------------------
 
(1) Other income includes interest income, interest expense and gains and losses
    from the sale of marketable securities.
 
(2) Net loss per share is computed as described in Note 1 of Notes to Financial
    Statements.
 
(3) Does not include restricted securities or restricted cash. At December 31,
    1996, restricted securities amounted to $712,000 and at June 30, 1997,
    restricted cash amounted to $712,000.
 
                                       22
<PAGE>
               MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL
                      CONDITION AND RESULTS OF OPERATIONS
 
OVERVIEW
 
    Synaptic Pharmaceutical Corporation is a biotechnology company engaged in
the development of a broad platform of enabling technology which it calls "human
receptor-targeted drug design technology." It is utilizing this technology both
to discover and clone the genes that code for human receptor subtypes associated
with specific disorders and to design compounds that can potentially be
developed as drugs for treating these disorders. The Company is engaged in
collaborations with four pharmaceutical companies: Lilly, Merck, Novartis and
Warner-Lambert. Since inception, the Company has financed its operations
primarily through the sale of stock and through funds provided by three of its
collaborative partners, Lilly, Merck and Novartis, under the Collaborative
Agreements. The Company entered into its collaboration with Warner-Lambert in
July 1997. The Company has also licensed certain technology to The DuPont Merck
Pharmaceutical Company ("DuPont Merck").
 
    Under its collaborative and licensing agreements, the Company may receive
one or two types of revenue from its collaborative partners: contract revenue
and license revenue. Contract revenue includes research funding to support a
specified number of the Company's scientists and payments upon the achievement
of specified research and development milestones. Research funding revenue is
recognized ratably over the period of the agreement to which it relates and is
based upon predetermined funding requirements. Research milestone payment
revenue is recognized when the related research milestone is achieved. License
revenue represents non-refundable payments for licenses to the Company's
technology and drug discovery systems. Non-refundable payments for licenses are
recognized at such time as they are received or, if earlier, become guaranteed.
In addition to contract revenue and license revenue, if a drug is developed as a
result of any of the collaborative agreements between the Company and its
collaborative partners, the Company is entitled to receive royalty payments
based upon the sale of such drugs. The Company also receives revenues from SBIR
grants.
 
    To date, the Company's expenditures have been for research and development
related expenses, general and administrative related expenses, fixed asset
purchases and various patent related expenditures incurred in protecting the
Company's technologies. The Company has been historically unprofitable and had
an accumulated deficit of approximately $26.1 million at June 30, 1997. The
Company expects to continue to incur operating losses for a significant number
of years and may not become profitable, if at all, until it begins to receive
royalty revenue. To date, the Company has not received any royalty revenue and
does not expect to receive such revenue for a significant number of years, if at
all.
 
RESULTS OF OPERATIONS
 
    COMPARISON OF THE SIX MONTHS ENDED JUNE 30, 1997 AND 1996
 
    REVENUES.  The Company recognized revenue of $5.6 million and $3.6 million
for the six months ended June 30, 1997 and 1996, respectively. The increase of
$2.0 million was attributable primarily to an increase in contract revenue of
$1.9 million; and an increase in grant revenue of $102,000. The increase in
contract revenue was primarily due to the expansion of the Company's
collaborative arrangement with Lilly; an increase in rates charged per full-time
equivalent scientist under all of the collaborative arrangements from which the
Company is receiving funding; and the receipt in the second quarter of a
milestone payment from one of the Company's collaborative partners.
 
    RESEARCH AND DEVELOPMENT EXPENSES.  The Company incurred research and
development expenses of $6.7 million, and $5.5 million for the six months ended
June 30, 1997 and 1996, respectively. The increase of $1.2 million, or 22%, in
research and development expenses was attributable primarily to an increase of
$566,000 in compensation expense resulting from a net average headcount increase
of 21 research personnel and an associated increase in fringe benefit expenses
as well as annual salary increases for the
 
                                       23
<PAGE>
scientific staff; an increase of $399,000 in research supply costs; and an
increase of $155,000 in facility related costs.
 
    GENERAL AND ADMINISTRATIVE EXPENSES.  The Company incurred general and
administrative expenses of $1.9 million and $1.4 million for the six months
ended June 30, 1997 and 1996, respectively. The increase of $558,000, or 41%,
was attributable primarily to $478,000 in patent and patent related expenses for
the six months ended June 30, 1997, resulting from expensing of all patent and
patent application costs as incurred, effective October 1, 1996.
 
    OTHER INCOME, NET.  The Company recorded other income, net of interest
expense, of $966,000 and $1.1 million for the six months ended June 30, 1997 and
1996, respectively. The decrease of $161,000 was primarily attributable to the
recognition in May of 1996 of a gain on sale of securities of $212,000.
 
    NET LOSS AND NET LOSS PER SHARE.  The net loss incurred by the Company was
$2.1 million ($0.27 per share), and $2.2 million ($0.29 per share) for the six
months ended June 30, 1997 and 1996, respectively.
 
    The Company does not believe that inflation has had a material impact on its
results of operations for either the three month period or the six month period
which ended June 30, 1997.
 
    COMPARISON OF FISCAL YEARS ENDED DECEMBER 31, 1996, 1995 AND 1994
 
    REVENUES.  The Company recognized revenue of $9.5 million, $8.0 million and
$5.0 million for the fiscal years of 1996, 1995 and 1994, respectively. The
increase of $1.5 million from 1995 to 1996 was attributable primarily to the
recognition of $2.0 million of license revenue from one of the Company's
collaborative partners in 1996 and an increase of approximately $231,000 of
grant revenue over the comparable period in 1995, both of which were partially
offset by a decrease in contract revenue of approximately $728,000. This
decrease in contract revenue was attributable to the receipt in 1995 of a one-
time $1.0 million payment from one of the Company's collaborative partners for
the achievement of a specific scientific milestone that was partially offset by
increases in 1996 in the rates charged to the Company's collaborative partners
per full time equivalent scientist.
 
    The increase of $2.9 million from 1994 to 1995 was attributable primarily to
an increase in contract revenue of $2.9 million. The increase in contract
revenue was primarily due to the recognition of five months of research funding
from Novartis in 1994 as compared to twelve months of such funding in 1995 as
well as the receipt of a $1.0 million payment from one of the Company's
collaborators for the achievement of a specific scientific milestone. Grant
revenue increased from $280,000 in 1994 to $307,000 in 1995.
 
    RESEARCH AND DEVELOPMENT EXPENSES.  The Company incurred research and
development expenses of $11.3 million, $9.9 million and $9.3 million for the
fiscal years of 1996, 1995 and 1994, respectively. The increase of $1.5 million
in research and development expenses from 1995 to 1996 was attributable
primarily to an increase of approximately $656,000 in compensation expense
resulting from an increase in average headcount year-to-year, annual salary and
bonus increases and an associated increase in fringe benefit expense, as well as
an increase in amortization of deferred compensation; an increase of
approximately $482,000 in research supply costs; an increase of approximately
$112,000 in research equipment costs related to research funded by government
grants; approximately $92,000 in increased depreciation expense; and an increase
of approximately $53,000 in software license fees.
 
    The increase of $555,000 in research and development expenses from 1994 to
1995 was attributable primarily to an increase of approximately $340,000
resulting from an increase in average headcount year-to-year as well as annual
salary and bonus increases and an associated increase in fringe benefit expense;
an increase of approximately $290,000 in research supply cost; and an increase
of approximately $112,000 related to depreciation of fixed assets as well as
amortization of patents, all of which were partially offset
 
                                       24
<PAGE>
by a decrease of approximately $186,000 due to the assumption by one of the
Company's collaborative partners in 1995 of certain preclinical testing
activities.
 
    GENERAL AND ADMINISTRATIVE EXPENSES.  The Company incurred general and
administrative expenses of $3.0 million, $2.2 million and $1.9 million for the
fiscal years of 1996, 1995 and 1994, respectively. The increase of $768,000 in
general and administrative expenses from 1995 to 1996 was attributable primarily
to an increase of approximately $292,000 in expenses associated with being a
public company; an increase of approximately $193,000 in compensation expense
resulting from an increase in average headcount and annual salary and bonus
increases and an associated increase in fringe benefit expense; an increase of
approximately $171,000 in patent and patent related costs; and an increase of
approximately $64,000 in certain supply and computer related expenses.
 
    The increase of $303,000 in general and administrative expenses from 1994 to
1995 was attributable primarily to: an increase of approximately $161,000 in
rent expense resulting from the full year cost of an additional 12,800 square
feet of space which was leased in August 1994; and an increase of approximately
$139,000 in compensation expense resulting from an average headcount increase as
well as annual salary and bonus increases and an associated increase in fringe
benefit expense.
 
    OTHER INCOME, NET.  The Company received other income, net of interest
expense, of $2.2 million, $734,000 and $651,000 for the fiscal years of 1996,
1995 and 1994, respectively. The increases of $1.5 million from 1995 to 1996 and
of $83,000 from 1994 to 1995 in other income, net of interest expense, were
primarily attributable to an increase in interest income as a result of an
increase in the average cash, cash equivalent and marketable security balances
maintained during the three years.
 
    NET LOSS.  The net loss incurred by the Company was $2.6 million, $3.4
million and $5.5 million for the fiscal years of 1996, 1995 and 1994,
respectively. The decrease of $734,000 in net loss from 1995 to 1996 was
attributable primarily to the increase in revenue and other income, offset by
higher research and development and general and administrative expenses.
 
    The decrease of $2.2 million in net loss from 1994 to 1995 was attributable
primarily to the increase in revenue and other income, offset by higher research
and development and general and administrative expenses.
 
    NET LOSS PER SHARE AND SUPPLEMENTARY NET LOSS PER SHARE.  The net loss per
share incurred by the Company was $0.35 and $4.76 for the fiscal years of 1996
and 1995, respectively. The supplementary net loss per share was $0.62 for 1995.
The 1995 supplementary net loss per share of $0.62 is computed using the
weighted average number of shares of common stock and convertible redeemable
preferred stock amounting to 5,430,127. Common equivalent shares from stock
options and warrants are excluded from the computation as their effect is
anti-dilutive, except that, pursuant to the Securities and Exchange Commission
Staff Accounting Bulletins, common and common equivalent shares issued at prices
below the offering price during the twelve-month period prior to the initial
public offering have been included in the calculation as if they were
outstanding for all periods presented prior to the initial public offering
(using the treasury stock method and the initial public offering price).
Additionally, the effect of common shares issuable upon conversion of
convertible redeemable preferred stock is included in supplementary net loss per
share as outstanding for all of 1995. The decrease of $0.27 per share ($0.35 vs.
$0.62) was primarily attributable to the decrease in net loss from 1995 to 1996,
as well as an increase in the number of shares used to calculate per share loss
from 1995 to 1996.
 
    OPERATING TRENDS.  It is expected that research funding from existing
collaborations will increase from approximately $6.9 million in 1996 to $9.9
million in 1997 and then decrease to $6.7 million in 1998. It is also expected
that operating expenses will increase in order to further support existing
collaborations and internal research efforts. Operating expenses are expected to
continue to grow, at a minimum, consistent with historical trends. Patent
related expenditures are expected to grow at a rate that is faster than the
historical operating expense growth rate.
 
                                       25
<PAGE>
    Other income, net is expected to decline in 1997 and 1998 as existing funds
are utilized to support the Company's operations.
 
    Property and equipment costs are expected to continue to increase as the
Company's currently underutilized space is converted into laboratory space.
 
    The Company does not believe that inflation has had a material impact on its
results of operations.
 
LIQUIDITY AND CAPITAL RESOURCES
 
    At June 30, 1997 and December 31, 1996, cash, cash equivalents and
marketable securities were in the aggregate $31.1 million and $34.7 million,
respectively. The decrease of $3.6 million was attributable primarily to the net
loss for the six months ended June 30, 1997, of $2.1 million and the purchase of
capital equipment and leasehold improvements of $1.7 million. In addition to the
cash, cash equivalents and marketable securities described above, the Company
had $712,000 in restricted cash recorded in its balance sheet at June 30, 1997.
This restricted cash is held in one of the Company's investment accounts and
secures lease payments to the Company's landlord for one full year and secures
the outstanding balance due on an equipment lease.
 
    Through June 30, 1997, the Company had met its cash requirements through the
sale of its stock, through licensing fees, research funding and milestone
payments received under the collaborative agreements with Lilly, Merck and
Novartis, through SBIR grants and through interest earned on its investments. As
of June 30, 1997, the Company had received: approximately $62.0 million from the
sale of its stock; approximately $42.6 million in licensing fees, research
funding and milestone payments under its collaborative arrangements;
approximately $2.9 million in SBIR grants; and approximately $5.4 million in
other income, net. To date, the portion of these funds that has been expended by
the Company has been used principally to fund research and development, to
purchase fixed assets used primarily in its research activities, to create its
patent estate and to pay general and administrative support costs.
 
    At June 30, 1997, the Company was involved in collaborative arrangements
with Lilly, Merck and Novartis and had licensed certain technology to DuPont
Merck. Lilly, Merck and Novartis are providing research funding to the Company
during 1997 and Lilly and Novartis are expected to provide research funding to
the Company during 1998. The aggregate amount of research funding under these
arrangements which the Company expects to receive during the remainder of 1997
and during 1998 is approximately $4.6 million and $6.7 million, respectively.
Warner-Lambert does not currently provide research funding to the Company and
the Company does not expect that such funding will be provided, if at all, until
1999. The Company's licensing arrangement with DuPont Merck does not provide for
any research funding. Research funding under the Lilly Agreement is scheduled to
expire on December 31, 1998. Research funding under the Merck Agreement is
scheduled to expire on November 30, 1997. Research funding under the Novartis
Agreements is scheduled to expire on August 3, 1998. DuPont Merck's license is
scheduled to expire on February 5, 1998.
 
    At June 30, 1997, the Company had invested an aggregate of $7.2 million in
property and equipment. The Company leases laboratory and office facilities
under an agreement expiring on December 31, 1999. The minimum annual payment
under the lease is $691,000.
 
    During the first six months of 1997, the Company spent approximately $1.7
million on capital improvements. Of this amount, approximately $1.4 million
related to the expansion of laboratory space and improvements to the Company's
assay screening systems and was committed in the fourth quarter of 1996. The
remaining $260,000 in property and equipment purchases that occurred during the
first six months of 1997 related to ongoing capital expenditures. At June 30,
1997, the Company had committed approximately $250,000 for capital costs
relating to improvements in its assay screening and data base management
systems.
 
                                       26
<PAGE>
    At June 30, 1997, the Company had available funds of $31.1 million. The
Company expects to continue to incur operating losses for a significant number
of years. In addition, the Company continues to convert currently underutilized
space into laboratory facilities beyond the level which existed at June 30,
1997. The Company believes that its cash on hand and marketable securities and
the funds it will receive from its collaborative partners and under SBIR grants,
together with the net proceeds of this Offering and interest income, will be
sufficient to fund an increased operating expense level through the year 2000.
 
    As of December 31, 1996, the Company had net operating loss carryforwards of
approximately $21.0 million for Federal income tax purposes that will expire
principally in the years 2002 through 2011. In addition, the Company had
research and development credit carryforwards which will expire principally in
2002 through 2009. For financial reporting purposes, a valuation allowance has
been recognized to offset the deferred tax assets related to these
carryforwards. Due to limitations imposed by the Tax Reform Act of 1986, and as
a result of a significant change in the Company's ownership in 1993, the
utilization of approximately $6.0 million of net operating loss carryforwards is
subject to annual limitation. The utilization of the research and development
credits is similarly limited. A further limitation of the net operating losses
and research and development credits may occur if there is a further change in
ownership in connection with the Offering or otherwise.
 
                                       27
<PAGE>
                                    BUSINESS
 
OVERVIEW
 
    Synaptic is a leader in the development of a broad platform of enabling
technology which it calls "human receptor-targeted drug design technology." The
Company is utilizing this technology to discover and clone the genes that code
for human receptor subtypes associated with specific disorders and is working
both independently and together with its collaborative partners to design
compounds that can potentially be developed as drugs for treating these
disorders. In addition to conducting several internal programs, the Company is
currently collaborating with Lilly, Merck, Novartis and Warner-Lambert on more
than twelve separate drug discovery programs covering ten therapeutic areas. To
date, these programs have yielded one Phase II clinical and six preclinical drug
development candidates.
 
    Synaptic's human receptor-targeted drug design technology is the result of
an integrated approach to four life science fields: molecular biology; cell
biology; pharmacology; and chemistry, including medicinal, combinatorial and
computer-assisted chemistry. This technology allows chemists to focus their drug
discovery efforts on a specific human receptor subtype target. The Company
believes that its technology provides three distinct advantages over the
traditional approach to drug discovery in which compounds are screened against
animal tissues containing many different receptor subtypes. FIRST, by having an
isolated receptor subtype as a target, chemists are better able to design
compounds that interact with only the target of interest and not with other
receptors that may be responsible for side effects. SECOND, the Company believes
that using human receptor subtypes as drug design targets will substantially
reduce the number of problems that often arise during the drug development
process as a result of differences in a compound's activity in humans compared
to its activity in animal tissues. THIRD, Synaptic believes that its technology
may be more cost-effective than traditional drug discovery because the Company
and its collaborative partners can eliminate or redesign compounds that react
poorly with human receptor targets prior to initiating the costly activities
related to preclinical testing and clinical trials.
 
    Synaptic focuses its receptor and drug discovery efforts on members of a
receptor superfamily known as "G protein-coupled receptors." The Company
selected this receptor family for two principal reasons. FIRST, many G
protein-coupled receptors have been shown to be effective drug targets, as
evidenced by the commercial availability of drugs for a wide variety of
therapeutic applications that work by means of their interactions with G
protein-coupled receptors. Of the one hundred drugs with the highest 1996
worldwide sales, twenty-five act through G protein-coupled receptors. SECOND,
the G protein-coupled receptor superfamily is extremely large and diverse and,
based on several estimates, exceeds 1,000 receptors, with its members being
involved in the mediation of a broad array of physiological functions.
Accordingly, the Company believes that there are substantial opportunities for
novel drug targets and believes that it has assembled one of the largest
collections of cloned genes that code for members of the G protein-coupled
receptor superfamily.
 
    The Company and Lilly have been collaborating since 1991 to develop drugs
that act through serotonin receptors for a variety of therapeutic applications.
One of their drug discovery programs, focused on the development of a novel drug
for the treatment of migraine, is in Phase II clinical trials. Four other
programs that are the subject of the collaboration, which are focused on the
development of a prophylactic treatment for migraine and drugs for the treatment
of smoking cessation, depression and obesity, are in the early preclinical stage
of development. The Company and Merck have been collaborating since 1993 on a
program focused on the development of a treatment for BPH. This program is in
the late preclinical stage of development. The Company and Novartis have been
collaborating since 1994 on a program focused on the development of a drug for
the treatment of obesity. This program is in the early preclinical stage of
development. In July 1997, the Company entered into a collaborative arrangement
with Warner-Lambert focused on multiple therapeutic applications, including
obesity, diabetes, Alzheimer's Disease, depression and pain.
 
                                       28
<PAGE>
    Three of the Company's collaborative partners, Lilly, Merck and Novartis,
provide the Company with financial support for research. As part of its
collaboration with the Company, Warner-Lambert is required upon the occurrence
of certain events to provide the Company with financial support for research
and, at the Company's option, to purchase equity in the Company. All four of
these collaborative partners are required to make payments to the Company upon
the achievement of certain milestones and to pay royalties to the Company based
upon net sales of any drugs resulting from their collaborations with the
Company. Through June 30, 1997, Synaptic had received an aggregate of $42.6
million in license fees, research funding and milestone payments and $14.5
million in equity investments from three of its collaborative partners. The
Company is entitled to receive additional payments from such partners in the
future. In addition to providing research funding to the Company, the Company's
collaborative partners dedicate substantial resources to the internal conduct of
their programs with the Company.
 
BUSINESS STRATEGY
 
    Synaptic's business strategy is to develop, together with its collaborative
partners, a broad array of drugs based upon the Company's human
receptor-targeted drug design technology. This strategy consists of four
principal objectives, the first of which is to aggressively discover and clone G
protein-coupled receptor genes. The Company believes that it has assembled one
of the largest collections of cloned genes that code for members of the G
protein-coupled receptor superfamily and is aggressively seeking to expand this
collection. To date, Synaptic has received United States patents relating to
eleven of these receptor genes and related drug discovery systems. In addition,
claims under another United States patent application relating to one of these
receptor genes have been allowed and many other United States patent
applications relating to the Company's receptor gene discoveries are pending.
Several corresponding patent applications have also been filed in other
countries. See "Risk Factors--Uncertainty of Patent Protection; Dependence on
Proprietary Technology" and "--Patents, Proprietary Technology and Trade
Secrets."
 
    The Company's second objective is to efficiently discover and design
potential drugs through the use of its human receptor-targeted drug design
technology. The Company and its collaborative partners are using this technology
to design, synthesize and optimize compounds for further development. The
Company's two approaches to designing and synthesizing compounds include
traditional medicinal chemistry and the newer technology of combinatorial
chemistry, each of which is supported by the Company's expertise in
computer-assisted molecular modeling. With both approaches, the Company's
chemists and pharmacologists use their knowledge of the structures of targeted
receptor subtypes to design and synthesize initial chemical structures that are
then optimized. Synaptic's chemists are currently involved in five drug
discovery programs, two of which are being conducted in collaboration with the
Company's partners. The Company's partners may select compounds for testing in
the Company's drug discovery systems from the Company's existing libraries of
compounds, their own existing libraries of compounds or newly discovered or
designed compounds.
 
    The Company's third objective is to leverage resources and generate
royalty-based revenues through collaborations and licensing arrangements with
pharmaceutical companies. Towards this objective, the Company focuses most of
its scientific resources on the discovery and design phases of the drug
development process and has historically entered into royalty-based
collaborations and licensing arrangements in which its pharmaceutical partners
and licensees participate in the early phases of the drug development process
and assume principal responsibility for preclinical testing, clinical trials and
commercialization. By pursuing this objective, Synaptic gains access to the
expertise and resources of its partners, while simultaneously maintaining
relatively low capital requirements. The Company's collaborative partners are
generally required to provide the Company with financial support for research,
milestone payments and royalties tied to net sales of any drugs resulting from
the collaborations.
 
    The Company's fourth objective is to retain ownership rights to certain
products developed through the use of its technology. The Company will seek to
achieve this objective in a variety of manners, including
 
                                       29
<PAGE>
the exploration of collaborations with pharmaceutical companies in which the
Company would increase its participation in and funding of drug development
activities conducted as part of such collaborations. Through such arrangements,
the Company believes that it may be able to gain access to additional chemistry
and IN VIVO pharmacology, preclinical and clinical expertise, as well as to
retain a greater portion of the downstream financial benefits associated with
the commercialization of any products resulting from such arrangements.
 
BACKGROUND
 
    THE ROLE OF RECEPTORS IN CONTROLLING CELLULAR FUNCTION
 
    The human body coordinates its activities through communication among its
great variety of cells and tissues. One of the principal means of communication
occurs through chemical signaling, when one cell releases a chemical messenger,
called a "ligand," which ultimately binds to and activates a protein molecule,
called a "receptor," on the surface of another cell. The activation of the
receptor on the surface of the receiving cell triggers a cascade of events in
which the message received by the receptor is, in turn, transmitted to the
interior of the cell, thereby causing some aspect of the behavior of the
receiving cell to change. The nature of this change depends upon a number of
factors, including the specific ligand and receptor involved in the
communication.
 
    There exist in the human body many different kinds of receptors involved in
cellular communication. Receptors are first classified into categories, called
"superfamilies," based upon similarities in their biochemical and structural
properties. There are four principal superfamilies of receptors: the G protein-
coupled receptor superfamily, the receptor protein-tyrosine kinase superfamily,
the ligand-gated ion channel superfamily and the intracellular receptor
superfamily. The receptors included within each superfamily are then
subcategorized into groups, called "families," based upon the specific ligands
with which they interact. Examples of receptor families within the G
protein-coupled receptor superfamily are the serotonin, adrenergic, neuropeptide
Y ("NPY") and galanin families of receptors. Each member of each family is
called a "receptor subtype."
 
    Historically, it was believed that each family of receptors had only one or
two members. In recent years, however, scientists have discovered that many
families of receptors have more than two receptor subtypes. The number of
receptor subtypes within each family of receptors varies, with some families,
such as the serotonin family, comprising at least 14 known receptor subtypes,
and other families, such as the alpha adrenergic family, comprising at least six
known receptor subtypes.
 
    In general, each receptor subtype is distributed differently throughout the
body and often controls physiological functions that are different from those
controlled by other receptor subtypes within the same family. By interacting
with all of its receptor subtypes that are located throughout the body, a single
ligand thus plays a role in numerous physiological functions. For example, the
ligand for adrenergic receptor subtypes, noradrenaline (also known as
norepinephrine), interacts with at least nine different receptor subtypes (six
alpha and three beta receptor subtypes), one of which has been shown to contract
the muscles surrounding the prostate and another of which has been shown to
regulate blood pressure. In some cases, the same receptor subtype is found in
different tissues of the human body. A compound designed to bind selectively to
a receptor subtype for treating a disorder in one tissue could, therefore,
potentially cause an adverse side effect in other tissues that contain the same
receptor subtype. The tissue affected by the disorder may, however, have certain
other characteristics that can be exploited to guide receptor subtype-targeted
compounds to that tissue.
 
    RECEPTOR-BASED DRUG THERAPY--THE TRADITIONAL APPROACH
 
    Many illnesses arise because of abnormalities in intercellular
communication, and the concept of receptor-based drug therapy was developed to
address this problem. The goal of receptor based-drug therapy is to develop
drugs that will interact with the receptor believed to be associated with the
targeted
 
                                       30
<PAGE>
abnormality, thereby inhibiting or enhancing the cascade of events that is
mediated by the receptor. A number of receptor-based drugs have been developed
and are currently being used. In general, however, these drugs do not
differentiate among receptor subtypes and, while they may indeed interact with
the targeted receptor subtypes, thereby having some therapeutic effect, they may
also interact with other receptor subtypes within the same family as the
targeted receptor subtypes. These other receptor subtypes may be associated with
other physiological functions, and interactions of these drugs with them often
result in undesirable side effects. In addition, many of these drugs have
limited therapeutic utility because they must be used in suboptimal doses in
order to minimize these side effects.
 
    The reason that most of these currently available drugs are unable to
differentiate among receptor subtypes stems from the fact that they were
discovered through traditional drug discovery methods. The traditional approach
to drug discovery involves the screening of compounds against animal tissues
containing multiple receptor subtypes to determine their relevant biological
activity. This approach is limited in its ability to yield optimally effective
drugs because of inherent limitations in the use of animal tissues to test drugs
intended for humans. First, by using animal tissues containing multiple receptor
subtypes, it is usually difficult and often impossible both to measure with
precision the effect of a compound on the receptor subtype that is the target of
a drug discovery effort and to determine whether the compound is binding to
other receptor subtypes in the tissue that are not the intended drug target.
Second, due to differences in the receptor systems of various species of animals
as compared to humans, there are often significant differences between a drug's
activity in animals and the same drug's activity in humans. In fact, there are
several examples of drug development candidate failures in human clinical trials
that were due to differences in the properties of such candidates in humans as
compared to their properties in the animal tissues that were initially used for
drug discovery. As a consequence, compounds initially tested against animal
tissues often do not have the desired effects when they are ultimately
administered to humans in clinical trials.
 
SYNAPTIC'S HUMAN RECEPTOR-TARGETED DRUG DESIGN TECHNOLOGY
 
    Synaptic believes that its human receptor-targeted drug design technology
can overcome the limitations of the traditional approach to drug discovery. This
technology involves three steps: (i) the discovery and cloning of the human
genes that code for the targeted receptor subtypes; (ii) the use of each of
these genes to create a cell line that can be used to measure, or assay, the
pharmaceutical properties of compounds that bind to the targeted receptor
subtype and that are, therefore, candidates for drug development; and (iii) the
design, synthesis and optimization of compounds that are highly selective for
the targeted human receptor subtype. In the first step, the Company's molecular
biologists employ genetic engineering techniques to clone the gene that codes
for the receptor subtype of interest. In the second step, the Company's cell
biologists place the gene into a recipient cell which then expresses the human
receptor subtype on its surface. This recipient cell, which expresses a single
population of the targeted human receptor subtype and is devoid of all other
related receptor subtypes, is then propagated by the Company's cell biologists,
resulting in the establishment of a cell line. Finally, this cell line is used
as a drug discovery system by the Company's pharmacologists to evaluate
compounds synthesized by the Company's or its collaborative partners' chemists.
Since each of these cell lines expresses a single receptor subtype, it is
possible to design compounds with high affinity for the ultimate target of a
drug discovery program--the appropriate human receptor subtype--and low affinity
for those subtypes suspected of being associated with side effects.
 
    The Company's technology makes it possible not only to clone receptors
previously believed or known to exist, but also to discover and clone receptor
subtypes which had previously been undetectable in animal tissues because they
were present in concentrations too low to detect using traditional
pharmacological techniques. Many of these newly discovered receptor subtypes may
provide opportunities for the design of novel drugs. In addition, the Company
believes that its ability to access and to use individual cloned human receptor
subtypes in its drug design efforts will yield safer and more effective drugs
than those currently
 
                                       31
<PAGE>
available. Synaptic further believes that its technology may make the drug
development process more predictive and cost-effective than the traditional
approach because the Company and its collaborative partners eliminate or
redesign non-subtype-selective compounds and compounds that react poorly with
human targets at an early stage of the process rather than at the costly later
stages of preclinical testing and clinical trials. Finally, drugs developed
through the use of the Company's human receptor-targeted drug design technology
will be small molecule drugs which offer possibilities of avoiding specialized
delivery approaches and which may be delivered orally.
 
    The Company also believes that its success in the discovery of receptor
subtypes will enable it to further refine the understanding of many disease
processes. There is increasing evidence to suggest that some disorders may
actually involve the malfunctioning of any one of a variety of receptor subtypes
included within different receptor families. For example, in the case of
obesity, there are pharmacological data indicating that a NPY receptor subtype
is involved in controlling appetite, while a galanin receptor subtype may be
involved in craving for fats in the diet. As a result, more than one drug could
be developed to treat obesity, but such drugs would work through different
biological mechanisms by exerting their therapeutic effects by interacting with
receptor subtypes belonging to different families. The Company believes that its
human receptor-targeted drug design technology may make it possible to discover
two or more separate drugs that could benefit distinct patient populations whose
symptoms (for example, obesity), while identical, stem from different
physiological disorders and therefore require different treatments.
Consequently, it has initiated several programs in which different receptor
subtypes are being used as drug targets for the same therapeutic application.
 
    To date, the Company has not completed development of any drugs and does not
expect that drugs developed by it or its collaborative partners will be
commercially available for a significant number of years. See "Risk
Factors--Early Stage of Product Development; Technological Uncertainty."
 
    RECEPTOR GENE DISCOVERY AND CLONING
 
    The Company's early and continuing focus on the G protein-coupled receptor
superfamily, together with its molecular and cell biology, pharmacology and
chemistry expertise, has enabled the Company to achieve a leadership position in
the discovery and cloning of G protein-coupled genes. See "--Overview." The
Company employs rigorous criteria in determining which receptor families will be
the targets of its receptor gene cloning and drug discovery programs. The
Company selects families within the G protein-coupled receptor superfamily for
which there is evidence of the existence of multiple subtypes and for which
therapeutic applications have been demonstrated or are suspected. In addition,
the Company only focuses on receptor families believed to be associated with
disorders for which the therapeutic applications would involve large commercial
opportunities and for which there are not currently available drugs that meet
the needs of most patients. To date, the Company's receptor cloning projects
have included four families of receptors within the G protein-coupled
superfamily of receptors: the serotonin, alpha adrenergic, NPY and galanin
receptor families. In addition, projects directed toward other receptor families
are ongoing.
 
    The Company believes that it has assembled one of the largest collections of
cloned genes that code for receptors in the G protein-coupled receptor
superfamily. Each of these genes has been incorporated into a drug discovery
system. These cloned receptor genes include human genes, as well as genes from
various other mammalian species that correspond to the human genes. Synaptic's
collection of cloned receptor genes includes genes that have been discovered by
the Company and genes that have been discovered by others about which
information is publicly available. In general, the Company seeks to patent those
cloned receptor genes and those drug discovery systems that it has discovered or
invented. The Company has been issued United States patents relating to the
genes that code for eleven G protein-coupled receptors and related drug
discovery systems. In addition, claims under another United States patent
application relating to one of these receptor genes and related drug discovery
systems have been allowed and many other United States patent applications
relating to the Company's receptor gene
 
                                       32
<PAGE>
discoveries are pending. Several corresponding patent applications have also
been filed in other countries. There can be no assurance that the Company will
be awarded patents in respect of any of its pending patent applications. See
"--Patents, Proprietary Technology and Trade Secrets" and "Risk Factors--
Uncertainty of Patent Protection; Dependence on Proprietary Technology."
 
    DRUG DISCOVERY SYSTEMS
 
    Once the Company clones the gene for a targeted receptor subtype, it places
the gene into a recipient cell which then expresses the targeted receptor
subtype on its surface. This cell, which expresses a single population of the
targeted human receptor subtype, is then propagated in the laboratory by the
Company's cell biologists, resulting in the establishment of a cell line. This
cell line, which constitutes a drug discovery system, is used in two different
types of assays: binding assays and functional assays. In Synaptic's binding
assays, the Company's pharmacologists measure the affinity of a compound for
both the receptor subtype that is the target of a particular drug discovery
program and the other receptor subtypes that could be associated with side
effects. These measurements help to predict the potency of a compound, as well
as the degree of selectivity that the compound has for the targeted receptor
subtype over other receptor subtypes. The data obtained from binding assays
enable the chemists to design compounds toward or away from one or more of the
relevant subtypes, as appropriate, for optimal therapeutic efficacy. In
Synaptic's functional assays, the Company's pharmacologists determine the nature
of the response of the receptor subtype to the compound. Data from the
functional assays show whether the compound is acting to inhibit or enhance the
activity of the receptor subtype. By enabling the Company's pharmacologists to
evaluate compounds rapidly at their ultimate human receptor subtype targets, the
Company's proprietary drug discovery systems serve as tools that the Company's
and its partners' chemists can use to rationally design drugs that will be more
effective and have fewer or substantially less severe side effects than existing
drugs. Although the Company believes that its drug discovery systems accurately
measure the properties of a compound's interaction with the human receptor
subtypes, there are many additional factors, such as the drug's stability in the
body or its ability to be administered orally, that impact the ultimate
pharmaceutical success of a compound.
 
    CHEMISTRY AND MOLECULAR PHARMACOLOGY
 
    The Company employs two approaches to designing and synthesizing receptor
subtype-selective compounds, traditional medicinal chemistry and the newer
technology of combinatorial chemistry, both of which are supported by the
Company's expertise in computer-assisted molecular modeling. With both
approaches, the Company's chemists and pharmacologists use their knowledge of
the structures of the targeted receptor subtypes and known compounds to design
and synthesize structures that will have activity at these subtypes.
 
    Combinatorial chemistry involves automated synthesis of a variety of novel
compounds by assembling them using different combinations of chemical building
blocks. The use of combinatorial chemistry greatly accelerates the process of
generating compounds. The resulting arrays of compounds are called libraries and
are used to screen for compounds ("lead compounds") that demonstrate a
sufficient level of activity at receptors of interest. The Company is using
combinatorial chemistry to synthesize "focused" libraries of compounds
anticipated to be highly biased toward the Company's drug discovery targets. The
Company's scientists have successfully generated lead compounds through the use
of these combinatorial chemistry techniques.
 
    Once lead compounds are identified, whether through the use of combinatorial
chemistry or traditional medicinal chemistry, a variety of analogues are
prepared to facilitate an understanding of the relationship between chemical
structure and biological activity. These studies help define structure activity
relationships which can then be used to design drug candidates with improved
potency, selectivity and pharmacokinetic properties. Combinatorial chemistry is
used to rapidly generate a variety of structures for lead optimization.
Traditional medicinal chemistry, which involves the synthesis of compounds one
at a
 
                                       33
<PAGE>
time, is also used for further refinement and to generate compounds not
accessible by automated techniques. See "--Patents, Proprietary Technology and
Trade Secrets" and "Risk Factors--Uncertainty of Patent Protection; Dependence
on Proprietary Technology."
 
RECEPTOR AND DRUG DISCOVERY PROGRAMS: FOCUS ON G PROTEIN-COUPLED RECEPTOR
  SUPERFAMILY
 
    The superfamily of receptors to which the Company has chosen to apply its
human receptor-targeted drug design technology is the G protein-coupled receptor
superfamily, so called because the cascade of events that ensues within the
receiving cell following the occurrence of the ligand-receptor interaction is
mediated by a class of proteins called "GTP-binding regulatory proteins," or "G
proteins," found within the cell.
 
    The Company chose to focus on the G protein-coupled receptor superfamily
because it believes that this superfamily provides the optimum opportunity for
the exploitation of its human receptor-targeted drug design technology. First,
it is known that G protein-coupled receptors play a major role in intercellular
communication and that drugs that block ("antagonists") or enhance ("agonists")
their activity have therapeutic utility. Examples of such drugs include:
Zantac-Registered Trademark-, a histamine receptor antagonist for the treatment
of ulcers; Claritin-Registered Trademark-, a histamine receptor antagonist for
the treatment of allergy; Propulsid-Registered Trademark-, a serotonin receptor
agonist for the treatment of gastric motility disorder;
Imitrex-Registered Trademark-, a serotonin receptor agonist for the treatment of
migraine headache; and Hytrin-Registered Trademark-, an adrenergic receptor
antagonist for the treatment of hypertension and benign prostatic hyperplasia.
Second, there is a large body of knowledge about some of the basic structural
elements of drugs that interact with these receptors that has accumulated over
the years from which the Company and its collaborative partners can draw in
beginning their drug discovery programs. Third, the G protein-coupled receptor
superfamily is extremely large and, based on several estimates, exceeds 1,000
receptor subtypes belonging to more than 40 known families and an unknown number
of additional families the ligands of which have not yet been identified. Fewer
than half of the genes that code for these subtypes have been cloned. G
protein-coupled receptors are included among the most important components
needed for cellular signaling in the body and, as a result, influence a broad
array of physiological functions. The Company believes that many members of the
G protein-coupled receptor superfamily are excellent targets for novel drugs to
treat a wide variety of diseases.
 
                                       34
<PAGE>
    Certain of the Company's receptor and drug discovery programs are summarized
in the following table:
 
                             SUMMARY OF SYNAPTIC'S
                      RECEPTOR AND DRUG DISCOVERY PROGRAMS
 
<TABLE>
<CAPTION>
- ------------------------------------------------------------------------------------
<S>               <C>         <C>                         <C>              <C>
PROGRAM(1)        RECEPTOR(S) PRIMARY INDICATION(S)       STATUS(2)        PARTNER
- ------------------------------------------------------------------------------------
SEROTONIN         1F          Acute Migraine              Phase II         Eli Lilly
                                                            Clinical
                  2B          Migraine Prophylaxis        Early            Eli Lilly
                                                            Preclinical
                  1A          Smoking Cessation           Early            Eli Lilly
                                                            Preclinical
                  2C          Obesity                     Early            Eli Lilly
                                                            Preclinical
                  --(3)       Depression                  Early            Eli Lilly
                                                            Preclinical
 
ALPHA ADRENERGIC  1a          Benign Prostatic            Late             Merck
                                Hyperplasia                 Preclinical
                  --(3)       Pain                        Leads            --
                                                            Identified
 
NEUROPEPTIDE Y    Y5          Obesity                     Early            Novartis
                                                            Preclinical
                  Y2          Pain                        Discovery        --
                  Y2          Anxiety and Depression      Leads            --
                                                            Identified
 
GALANIN           1, 2, and   Obesity, Diabetes,          Cloning and      Warner-
                  3             Alzheimer's Disease,        Discovery      Lambert
                                Depression and Pain
- ------------------------------------------------------------------------------------
</TABLE>
 
(1) The Company is working on receptor and drug discovery programs in addition
    to those programs referenced in the above table. In general, the drug
    discovery and receptor discovery programs that are specifically referenced
    in the above table are at more advanced stages of development than those
    that are not specifically referenced in the table.
 
(2) "Cloning" refers to the stage at which the Company is attempting to
    discover, identify and clone the genes for specific receptor subtypes.
 
    "Discovery" refers to the stage at which chemists are attempting to identify
    receptor subtype-selective compounds through the use of the Company's drug
    discovery systems.
 
    "Leads Identified" refers to the stage at which receptor subtype-selective
    compounds have been identified through the use of the Company's drug
    discovery systems.
 
    "Early Preclinical" refers to the stage at which one or more leads have been
    identified and are being tested in IN VITRO or IN VIVO model systems for one
    or more indications. In addition, at this stage lead compounds may have been
    shown to be active in animal models for one or more indications and
    preliminary toxicology and pharmacokinetics studies will also have been
    concluded.
 
    "Late Preclinical" refers to the stage at which a clinical candidate has
    been selected, scale-up of such candidate is underway or completed, and
    toxicology and pharmacokinetics studies are planned or underway.
 
    "Phase I Clinical" refers to the stage at which a drug candidate is
    administered to a small group of healthy human subjects for the purpose of
    testing for safety (adverse effects), dose tolerance, absorption,
    bio-distribution, metabolism, excretion and clinical pharmacology.
 
    "Phase II Clinical" refers to the stage at which a drug candidate is
    administered to a small sample of the actual intended patient population to
    seek to assess the efficacy of the drug candidate for the specific targeted
    indication, to determine dose tolerance and the optimal dose range and to
    gather additional information relating to safety and potential adverse
    effects.
 
(3) This information is confidential to the Company and, if applicable, its
    collaborative partners.
 
                                       35
<PAGE>
SEROTONIN PROGRAMS
 
    Serotonin is one of the major neurotransmitters, a type of ligand, of the
body. It affects mood, sleep rhythms, sexual functions, appetite, temperature
control, gastro-intestinal movement and the cardiovascular, pulmonary and
genito-urinary systems. Drugs that inhibit or enhance the actions of serotonin
have proven to be effective in the treatment of an array of disorders, such as
migraine headache, depression and anxiety. However, none of the limited number
of serotonergic drugs currently available was designed with the use of cloned
serotonin receptor subtype genes and some of these drugs have undesirable side
effect profiles. It is generally believed that the poor side effect profiles
stem from the interaction of these drugs with multiple serotonin receptor
subtypes. The serotonin family is extremely large, comprising at least 14
receptor subtypes. While each of these receptor subtypes may be implicated in a
physiological function distinct from the other subtypes, all of the receptor
subtypes respond to the neurotransmitter serotonin-- and may be responding to
non-subtype-selective drugs. As a consequence, a non-subtype-selective drug
intended to exert its effects on one physiological function may in fact have the
unintended consequence of exerting its effects on other physiological functions,
thereby causing the undesirable side effects.
 
    Of the 14 serotonin receptor subtype genes that have been discovered and
cloned, the Company believes that it is responsible for the discovery and
cloning of seven. The Company has been issued United States patents covering six
of these receptor genes and related drug discovery systems. A patent application
covering the seventh of these genes and the related drug discovery system and
additional patent applications relating to all of these genes have been filed in
the United States. The Company has found, through the use of these cloned
receptor genes and related drug discovery systems, that the serotonin system is
significantly more complex than had previously been understood and believes that
the use of its technology to design serotonin subtype-selective drugs will
result in new serotonergic drugs with improved efficacy and side effect
profiles, as well as serotonergic drugs for new therapeutic applications. There
can be no assurance that the Company will be successful in designing a serotonin
receptor subtype-selective drug that will achieve the foregoing desired effect.
 
    The Company, in collaboration with Lilly, is currently conducting drug
discovery programs focused on a number of serotonin receptor subtypes and
therapeutic applications. As part of the collaboration, compounds supplied by
Lilly are assayed by the Company in its serotonin receptor subtype drug
discovery systems. To date, receptor subtype-selective compounds have been
identified for a number of serotonin programs. The program focused on the
discovery and development of drugs for the treatment of migraine headache is
currently in Phase II clinical trials. In connection with the collaboration,
Lilly received an exclusive worldwide license to use all but two of the
Company's existing serotonin drug discovery systems for the development and
commercialization of serotonergic drugs. Certain of the serotonin programs are
described below.
 
    MIGRAINE HEADACHE
 
    Migraine headaches are periodic throbbing headaches often accompanied by
nausea and vomiting. Migraine is a condition that occurs in an estimated 10% of
the general population, or approximately 25 million individuals in the United
States. There is a significant loss of productivity in persons who suffer
frequent migraine headaches.
 
    One of the newer drugs available for the treatment of migraine,
Imitrex-Registered Trademark-, is an agonist of certain serotonin receptor
subtypes that was discovered using the traditional approach to drug discovery.
Although effective in most patients, the drug has been associated with the
tightening of the coronary blood vessels. As a result, the drug is
contraindicated both in patients with ischemic heart disease and in patients
with symptoms of ischemic heart disease. In addition, because of the
cardiovascular risks, it is recommended that, in the case of any patient in whom
unrecognized coronary disease is comparatively likely, the first dose of the
drug be administered in a physician's office. Finally, the drug is poorly
absorbed from the gastrointestinal tract. Therefore, to be most effective, it
must be given by injection or by nasal spray.
 
                                       36
<PAGE>
    The Company and Lilly are focused on developing anti-migraine compounds with
increased efficacy and reduced side effects. Through the use of its serotonin
receptor subtype drug discovery systems, Synaptic scientists discovered that
Imitrex-Registered Trademark- reacted strongly with three serotonin receptor
subtypes, serotonin 1B and 1D, both of which were long thought to be the targets
for anti-migraine effects, as well as serotonin 1F. Synaptic scientists proposed
that the appropriate serotonin receptor subtype for the treatment of migraine is
the serotonin 1F receptor subtype. Together with scientists at Lilly, Synaptic
scientists identified compounds that are selective agonists of the serotonin 1F
receptor subtype. These compounds were tested in animal models at Lilly and
shown to be orally active and to have a long duration of action. The compounds
were also shown to be potent in an animal model that is thought by many
scientists in the field to be predictive of therapeutic utility for the
treatment of migraine. Furthermore, these compounds were inactive in
vasoconstriction assays at Lilly, thereby suggesting that the possible adverse
events reported for Imitrex-Registered Trademark- would not limit the treatment
potential of a 1F-selective agonist for migraine. Lilly is currently conducting
Phase II clinical trials with one of these compounds in Europe.
 
    The Company and Lilly are also focused on the discovery of safer and more
efficacious drugs for the prophylactic treatment of migraine. Despite
significant progress in the development of therapies for the acute treatment of
migraine, much less progress has been made in the development of a prophylactic
treatment. Patients who regularly experience two to six migraines per month are,
according to criteria established by the International Headache Society,
considered to be candidates for such a treatment. These patients represent
roughly 10% of migraineurs. Presently, two beta adrenergic blockers,
Inderal-Registered Trademark- and Blocadren-Registered Trademark-, ergot
alkaloids, such as Sansert-Registered Trademark-, and an anticonvulsant,
Depakote-Registered Trademark-, have been approved for the prophylaxis of
migraine. These drugs generally have limited efficacy due to their potential for
significant deleterious side effects. Inderal-Registered Trademark- and
Blocadren-Registered Trademark- must be used with caution in patients with
certain pulmonary diseases because they can produce bronchoconstriction and in
patients with congestive heart failure because they can cause coronary
depression. Ergot alkaloids can cause vasoconstriction leading to myocardial
ischemia or gangrene in the extremities and should not be used by pregnant
women. Depakote-Registered Trademark- can cause fatal hepatic failure and, like
ergot alkaloids, should be avoided by pregnant women.
 
    Through the use of Synaptic's serotonin receptor subtype drug discovery
systems, scientists at Synaptic and Lilly have discovered selective antagonists
of the serotonin 2B receptor subtype, which is thought to be a potential target
for migraine prophylaxis. These compounds are active in animal models of
migraine at Lilly and it is believed that such agents may provide safer and more
effective prophylactic therapy for those who suffer frequent migraine.
 
    SMOKING CESSATION
 
    There are more than 150 million smokers in major market countries, more than
30 million of whom attempt each year to quit smoking. Chronic use of tobacco is
causally linked to a variety of serious diseases, including coronary heart
disease, cancer and emphysema. Nicotine patches and nicotine gum have been used
as smoking cessation aids, but have met with limited success. Recently,
Wellbutrin-Registered Trademark-, which has been available for a number of years
as an antidepressant, was approved by the FDA for marketing in a sustained
release formulation (Zyban-Registered Trademark-) for use as an aid to smoking
cessation. Clinical studies show that Zyban-Registered Trademark-, either alone
or in combination with transdermal nicotine, increases the rate of smoking
cessation. However, the long-term response rate to Zyban-Registered Trademark-
as an aid in smoking cessation is low (about 20%). In addition, the active
ingredient in Zyban-Registered Trademark- has been reported to cause seizures in
about 0.4% of patients, along with agitation and insomnia.
 
    The Company and Lilly are engaged in a program to identify and develop
serotonin 1A antagonists which ameliorate the withdrawal symptoms frequently
suffered in connection with smoking cessation. As part of the program, the
Company and Lilly have designed novel compounds which are highly selective for
and are potent antagonists of the serotonin 1A receptor subtype. These compounds
have been shown to be effective in an animal model of nicotine withdrawal and
may lead to drugs which are more effective as smoking cessation aids than those
currently available.
 
                                       37
<PAGE>
    OBESITY
 
    It is estimated that 34 million adult Americans (26% of those aged 20 to 75
years) are overweight. The incidence of a number of different disease states,
including hypertension, non-insulin-dependent diabetes, arthritis and
cardiovascular disease, is increased in patients suffering from obesity. The
current opinion of experts in this area is that obesity should be viewed as a
chronic medical problem, much like hypertension, and that individuals suffering
from obesity should consider chronic drug therapy to treat this condition.
 
    Drug treatment for obesity has traditionally been used as a short-term
adjunct to diet and exercise. Most drugs approved for the treatment of obesity
act centrally through catecholaminergic and/or serotonergic pathways. Earlier
compounds, such as Benzedrine-Registered Trademark- and
Dexedrine-Registered Trademark-, were plagued by problems of tolerance, abuse
and cardiovascular side effects. More recently, Pondimin-Registered Trademark-
and Redux-Registered Trademark-, which act by releasing the neurostransmitter
serotonin, were widely used, either alone or in combination with phentermine
(Phen-Fen). However, both of these drugs have been withdrawn from the market
pursuant to a request by the FDA because they appear to cause heart valve
defects and pulmonary hypertension. The mechanism by which
Pondimin-Registered Trademark- and Redux-Registered Trademark- cause this
cardiac and pulmonary toxicity is unknown, but similar toxicity is not seen with
other serotonergic drugs, such as Prozac-Registered Trademark- and
Zoloft-Registered Trademark-, which are widely used as antidepressants.
 
    While it has been proven that serotonergic transmission can regulate food
intake, it has not been clear which of the serotonin receptor subtypes is
responsible for this action. Studies involving genetically altered mice which
lack serotonin 2C receptors indicate that this serotonin receptor subtype may
play a role. These mice are normal at birth but become obese as they get older,
and their obesity is associated with increases in food intake levels and insulin
resistance. A possible correlation in humans is provided by the observation that
patients treated with drugs such as clozapine, imipramine, and amitriptyline,
all of which have, in addition to their principal actions, substantial blockade
of the serotonin 2C receptors, are associated with weight gain.
 
    The Company and scientists at Lilly are collaborating to identify and
develop compounds which are selective for the serotonin 2C receptor over other
serotonin receptor subtypes that may be responsible for undesirable side
effects. The Company's serotonin receptor subtype drug discovery systems have
made it possible to discover subtype selective compounds that may be effective
treatments for obesity through this serotonin 2C mechanism. Subtype selective
compounds which suppress food intake in animal models have been identified and
are under evaluation for their suitability as drug candidates.
 
    DEPRESSION
 
    Depression is one of the major psychiatric disorders encountered today. The
National Institute of Mental Health estimates that over 15 million individuals
in the United States suffer from depression at any one time. A number of
different pharmacologic strategies have been developed to treat depression. The
early drugs shown to be effective in the treatment of depression, such as the
tricyclic antidepressants, lithium and the monoamine oxidase inhibitors, have
side effects associated with their use that limit their effectiveness. Recently,
selective serotonin reuptake inhibitors (SSRI), such as
Prozac-Registered Trademark-, Zoloft-Registered Trademark- and
Paxil-Registered Trademark-, have been shown to be highly effective in the
treatment of many forms of depression. A number of SSRI compounds are now
approved for marketing, and these drugs have captured a significant market
share. However, all of these currently available drugs have significant
deleterious side effects in many patients which may limit their use. In
addition, these drugs have a lag time before their beneficial clinical effects
can be seen. This lag time can be a serious problem, especially in the depressed
suicidal patient. Furthermore, there are a significant number of patients that
do not adequately respond to any of the currently available drug therapies.
 
    Scientists at Synaptic and Lilly have identified novel serotonin
receptor-subtype selective compounds that may have rapid onset of efficacy in
the treatment of depression and that may also have better side effect profiles
than drugs currently available.
 
                                       38
<PAGE>
    OTHER SEROTONIN PROGRAMS
 
    The Company has cloned additional serotonin receptor subtypes that are
either not currently being pursued by it and Lilly as drug targets in their
collaborative drug discovery programs or are being so pursued but are focused on
therapeutic applications which are currently confidential to the Company and
Lilly. In addition, there is evidence to suggest that one or more serotonin
receptor subtypes that are the targets of the drug discovery programs currently
being conducted by the Company and Lilly may be relevant as targets for other
therapeutic applications. The Company expects that it and Lilly will establish
additional drug discovery programs focused on these other serotonin receptor
subtypes or therapeutic applications in the future. There can be no assurance
that the Company will establish additional drug discovery programs with Lilly.
 
ALPHA ADRENERGIC PROGRAMS
 
    Alpha adrenergic receptors are activated by the neurotransmitter
norepinephrine (noradrenaline). The alpha adrenergic receptors serve a critical
control function in regulating involuntary physiological functions, such as
blood pressure, heart rate and smooth muscle tone, and thus may serve as
important tools in the management of many disorders, such as BPH.
 
    Until 1982, only two alpha adrenergic receptors (alpha-1 and alpha-2) were
believed to exist. Since then, scientists have discovered that the alpha
adrenergic receptor family contains six subtypes (alpha-1a, 1b and 1d and
alpha-2a, 2b and 2c). The Company believes it was responsible for the discovery
of the genes that code for four of the six alpha adrenergic subtypes in humans.
The Company has received a United States patent covering one of these genes and
a related drug discovery system and has received a notice of allowance of claims
under another United States patent application relating to another of these
genes and the related drug discovery system. See "--Patents, Proprietary
Technology and Trade Secrets."
 
    There are a number of adrenergic drugs on the market today which are
effective in the treatment of a variety of disorders. However, most of these
drugs were discovered in the 1970's prior to the discovery of the six alpha
adrenergic subtypes and are not selective for any one of these receptor
subtypes. The Company believes that many of the side effects associated with
these drugs may be traced to a lack of selectivity for the appropriate receptor
subtypes. The Company is using its alpha adrenergic drug discovery systems to
discover compounds with increased receptor subtype selectivity and is involved
in two programs involving alpha adrenergic receptor subtypes: the Alpha-1a
Antagonist Program and the Alpha-2 Adrenergic Program. There can be no assurance
that the Company or any collaborative partner will be successful in designing an
alpha adrenergic receptor subtype-selective drug with improved efficacy and an
improved side effect profile.
 
    The Company and Merck are collaborating on the Alpha-1a Antagonist Program
to develop drugs for the treatment of BPH. The Alpha-2 Adrenergic Program is
being conducted by the Company independently, although the Company is seeking a
partner with which to collaborate on this drug discovery program or a licensee
to pursue the program. These programs are discussed below.
 
    BENIGN PROSTATIC HYPERPLASIA
 
    BPH is a pathology of the prostate, a walnut-sized gland in men that
surrounds the urethra as it exits the bladder. As men age, cells in the prostate
proliferate, causing growth in the prostatic tissue which in turn results in
pressure on the urethra. Common symptoms of BPH include urinary retention,
hesitancy or difficulty initiating the stream of urine, urinary frequency, a
sense of urgency and a sensation of incomplete emptying of the bladder. The
incomplete emptying of the bladder caused by BPH can also lead to urinary tract
infections and bladder damage. In severe cases, the flow of urine can become
completely blocked and lead to kidney failure. BPH affects approximately 50% of
men over the age of 50, with such percentage increasing with age.
 
                                       39
<PAGE>
    There are several treatment options available for BPH. Transurethral
resection of the prostate (TURP) was used in approximately 180,000 men in the
United States in 1996. This surgical procedure results in significant benefit.
However, because of its potential adverse consequences, surgery is an
unattractive alternative for many patients and is not recommended for elderly
patients due to the potential for complications. Another surgical procedure,
transurethral needle ablation (TUNA), was recently approved by the FDA and may
have the advantage of possible use on an out-patient basis under local
anesthesia. However, initial results of a recent study comparing TURP to TUNA
show a lower level of efficacy in TUNA than in TURP with respect to increasing
urinary flow.
 
    Two different non-surgical alternatives for the treatment of BPH in patients
who either are not candidates for or elect not to have surgery are currently
available. The first alternative is a type of drug that acts by inhibiting the
enzyme 5 alpha reductase, which is responsible for the conversion of
testosterone to dihydrotestosterone in the prostate. By reducing levels of
dihydrotestosterone, which plays a role in growth of prostatic tissue, this type
of drug is intended to shrink the gland. An example of this type of drug is
Proscar-Registered Trademark-. Although there is a rapid regression of the
enlarged gland in most patients, less than 50% of patients experience an
increase in urine flow and improvement of symptoms when treated with
Proscar-Registered Trademark- for 12 months. A minimum of six months' treatment
may be necessary to determine whether an individual may respond to the drug.
 
    The second type of drug for the treatment of BPH involves the use of alpha-1
adrenergic antagonists, such as Hytrin-Registered Trademark- and
Cardura-Registered Trademark-, that act by blocking alpha adrenergic stimulation
of the prostate. This blocking activity causes a relaxation of the musculature
of the prostate, thereby improving urinary flow and providing other symptomatic
relief of BPH. These drugs were initially developed as antihypertensive agents
in the mid-1970's prior to the discovery that there existed three distinct
subtypes of the alpha-1 receptor, and are not selective for any particular
alpha-1 subtype. While rapid symptomatic improvement in approximately 70% of
patients treated with this type of drug has been observed, dose-dependent side
effects, including hypotension (which causes dizziness), headache, weakness,
nasal congestion and peripheral edema, are commonly associated with the
treatment. The side effects limit the recommended dose for these drugs. The most
significant side effect, hypotension, is particularly detrimental to elderly
patients. Recently, another alpha antagonist, Flomax-Registered Trademark-, was
approved for use in the treatment of BPH. Flomax is claimed to be
"uroselective," but its labeling carries warnings of side effects, such as
postural hypotension, dizziness and vertigo, similar to those of
Hytrin-Registered Trademark-.
 
    Through the use of its alpha adrenergic drug discovery systems and by means
of IN VIVO studies, Synaptic has discovered that different receptor subtypes are
involved in the control of prostate musculature and blood pressure: the alpha-1a
receptor subtype is responsible for contraction of prostate musculature and
other alpha-1 subtypes are involved in the regulation of blood pressure. This
discovery confirmed the Company's hypothesis that many of the side effects
caused by alpha-1 adrenergic antagonists currently available for the treatment
of BPH stemmed from their lack of selectivity for the receptor subtype involved
in relaxation of prostate musculature. In April 1995 and in November 1996, the
Company was issued United States patents covering the use of selective alpha-1a
antagonists for the treatment of BPH. In addition, in September 1996, Synaptic
was awarded a United States patent covering the use of genetically engineered
cells expressing the human alpha-1a adrenergic receptor subtype to identify
compounds that bind to the receptor subtype.
 
    The Company, in collaboration with Merck, is using the Company's drug
discovery systems to design compounds that block the activity of the alpha-1a
receptor subtype, thereby producing the desired effects on the prostate, but
that have minimal affinity for alpha-1b and alpha-1d receptor subtypes, thereby
substantially reducing the cardiovascular effects seen with currently available
non-selective alpha-1 adrenergic antagonists. A compound has been selected by
Merck for possible development and is undergoing late preclinical testing. Other
leads have also been identified and are in the early preclinical stage of
testing.
 
                                       40
<PAGE>
    As part of the collaboration, Synaptic granted Merck an exclusive worldwide
license to its alpha-1 adrenergic technology, alpha-1a selective compounds and
certain patents to develop an alpha-1a selective drug for the treatment of BPH.
In addition, Synaptic granted Merck a nonexclusive worldwide license under
certain other patents for the same purpose.
 
    PAIN
 
    Analgesic agents are used to relieve pain (analgesia). Analgesics most
commonly used for severe pain are narcotics. Although very effective, narcotic
analgesic agents carry the risk of depressing respiration and causing nausea and
vomiting, and their repeated use may lead to addiction. It is believed that
non-narcotic analgesics would be beneficial to many patient populations
suffering from severe pain.
 
    Alpha-2 agonists have been broadly used and are highly effective as
veterinary analgesics. Animal data indicate that these agents do not cause
respiratory depression. In addition, their action can be reversed with
appropriate drugs. However, they cause both sedation and hypotension when
administered within the analgesic dose range. Alpha-2 agents have not yet been
developed as analgesics for human use, in part due to concerns regarding
potential deleterious side effects, such as sedation and hypotension. Synaptic
believes that its drug discovery systems for the three human alpha-2 adrenergic
receptor subtypes can be used to discover alpha-2 analgesics which have
significantly fewer deleterious side effects than currently available analgesics
and the effects of which may be rapidly reversed. The Company has identified
alpha-2 agonists with analgesic activity in laboratory animal models and is
seeking a partner with which to collaborate on this drug discovery program or a
licensee to pursue the program. There can be no assurance that the Company will
be successful in consummating a collaborative arrangement with another company
with respect to this drug discovery program.
 
NEUROPEPTIDE Y PROGRAMS
 
    Neuropeptides are neurotransmitters. Unlike neurotransmitters that are small
molecules, such as norepinephrine and serotonin, neuropeptides are much larger
molecules. The mode of action of neuropeptides, however, resembles that of small
molecule neurotransmitters in that they function by means of an interaction with
specific families of receptors, including families within the G protein-coupled
receptor superfamily. Although current knowledge of neuropeptides and their
receptors is significantly less extensive than knowledge of small molecule
neurotransmitters and their receptors, subtypes have been shown to exist for
several families of neuropeptide receptors.
 
    One focus of the Company in its receptor and drug discovery efforts in this
area has been on the NPY family of receptors. Although the natural ligand for
this family, NPY, is a large molecule, the goal of this drug discovery program
is, as is the case in all of the Company's other drug discovery programs, to
design a small molecule drug. Large peptide-like molecules would not be stable
in the body and thus would have short durations of action and would not be
orally available, thus requiring delivery by injection. To date, there is
evidence for the existence in humans of at least five NPY receptor subtypes,
named Y1, Y2, Y3, Y4 and Y5. However, the discovery and cloning of the genes for
only four of these subtypes have been reported. In 1996 and 1997, the Company
was awarded United States patents covering the genes that code for the Y2, Y4
and Y5 receptor subtypes and related drug discovery systems. Synaptic has filed
additional patent applications relating to these discoveries in the United
States and in other countries. At the present time, the Company is conducting
one NPY receptor and drug discovery program in collaboration with Novartis
focused on obesity and is seeking a collaborative partner to work with the
Company on its other two NPY drug discovery programs involving pain and anxiety.
There can be no assurance that the Company will be successful in consummating a
collaborative arrangement with respect to either of these NPY drug discovery
programs with another company or that the Company or any collaborative partner
will be successful in designing a safe and effective NPY receptor
subtype-selective drug.
 
                                       41
<PAGE>
    OBESITY
 
    Animal studies have shown that NPY is the most potent stimulator of food
intake identified to date. As little as one billionth of a gram of NPY injected
directly into the hypothalamus causes well-fed, satiated rats to overeat.
Repeated administration of NPY causes continual overeating and obesity.
 
    A Y5 receptor was initially isolated by the Company's scientists from rat
hypothalamus, a key brain area that controls appetite. In laboratory tests, the
activity of NPY and related peptides on the Y5 receptor mirrored the ability of
these peptides to stimulate feeding in animals. As part of its collaboration
with the Company, Novartis then showed that several peptides that activated the
Y5 receptor preferentially over other known NPY receptors increased food intake
in rats. Additional studies by Synaptic and Novartis showed that small molecules
that selectively block the Y5 receptor significantly reduce food intake in rats.
Based upon these studies, Synaptic believes that the Y5 receptor is a "feeding"
receptor, and that compounds that are selective for this receptor subtype may
lead to new approaches to the treatment of obesity. The Company and Novartis are
thus focused on discovering and developing a potent and selective Y5 antagonist.
As part of its collaboration with the Company, Novartis has an exclusive license
to use the Company's NPY receptor subtype drug discovery systems for the
development and commercialization of Y5 antagonists, as well as any other NPY
drugs for the treatment of eating disorders and cardiovascular disease.
 
    ANXIETY
 
    Anxiety is a sense of irrational fear or dread and is one of the most
frequent psychiatric diagnoses in the United States. There is a variety of
pharmacologic treatments for anxiety, the most commonly used of which belong to
the class of compounds called benzodiazepines, an example of which is
Valium-Registered Trademark-. This class of compounds, however, is associated
with significant side effects, including drowsiness, impairment of motor skills,
memory loss and the exacerbation of intoxication by alcohol. Another serious
side effect associated with the benzodiazepines is their potential to be
addictive.
 
    Behavioral studies have suggested that NPY can produce anxiety in rats by
activating the Y2 receptor subtype, raising the prospect that a small molecule
Y2 receptor antagonist may provide a novel treatment for anxiety devoid of the
side effects commonly associated with currently available anxiolytics. Thus, the
goal of this drug discovery program is to design compounds that selectively
block the Y2 receptor subtype.
 
    PAIN
 
    As part of its efforts to discover non-narcotic drugs for the treatment of
pain, the Company is conducting a program focused on the design and development
of analgesics that stimulate the Y2 receptor subtype. Direct injection of NPY
into the spinal cord produces a high level of analgesia in laboratory animals.
This effect is believed to be related to NPY's ability to stimulate Y2
receptors. These receptors control the release of chemical messengers, such as
Substance P, which mediate the transmission of pain responses. Synaptic believes
that orally active small molecule agonists which would mimic the effects of NPY
at the Y2 receptor may offer a new approach to the treatment of pain that would
not result in the side effects typically associated with narcotic analgesics.
 
GALANIN PROGRAM
 
    Galanin is a neurotransmitter which, like NPY, is a neuropeptide. Galanin is
widely distributed in the gastrointestinal tract and the brain. Pharmacologic
studies suggest the existence of multiple receptor subtypes for this
neuropeptide. There are a number of possible therapeutic applications for drugs
that modulate galanin receptors, including the treatment of obesity, diabetes,
Alzheimer's Disease, depression and pain. Most of the research done to date with
galanin has focused on its role in the control of food intake. Injection of
galanin into the brain has been shown to produce an increase in food intake in
satiated
 
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rats. As a result, galanin receptor antagonists might result in a reduction of
food intake and may thus be useful in the treatment of obesity.
 
    To date, the Company has discovered and cloned genes that code for galanin
receptor subtypes and has filed patent applications relating to these
discoveries. In July 1997, the Company entered into a collaboration with
Warner-Lambert to identify and develop galanin receptor subtype-selective
compounds for a variety of therapeutic applications. There can be no assurance
that the Company or Warner-Lambert will be successful in developing any such
compound. See "--Collaborative Arrangements--Warner-Lambert Agreement."
 
OTHER PROGRAMS
 
    The Company is pursuing additional receptor discovery programs, the
identities of which have not yet been disclosed. These programs involve the use
of the Company's molecular biology resources to clone members of selected G
protein-coupled receptor families in a focused manner. In addition, the Company
is engaged in cloning other G protein-coupled receptors using a genomics
approach. This approach involves the sequencing of genes from various types of
tissues selected by the Company based upon their potential association with a
therapeutic application of interest to the Company. The Company is also
developing technology, and exploring in-licensing opportunities, for the purpose
of obtaining high throughput functional assays for its receptor discoveries. The
Company is also pursuing several drug discovery programs, the applications of
which have not yet been disclosed.
 
COLLABORATIVE ARRANGEMENTS
 
    A key element of the Company's business strategy is to leverage resources
and to generate royalty-based revenues through collaborative and licensing
arrangements with pharmaceutical companies. The Company is currently engaged in
collaborations with Lilly, Merck, Novartis and Warner-Lambert. While the Company
evaluates on an ongoing basis potential collaborative arrangements with
pharmaceutical companies, there can be no assurance that it will be able to
enter into acceptable collaborative arrangements in the future or that any such
arrangement, whether existing or future, will be successful. See "Risk
Factors--Dependence on Collaborative Partners for Development, Regulatory
Approvals, Manufacturing, Marketing and Other Resources." The following
summarizes the Company's existing collaborative arrangements.
 
    LILLY AGREEMENT
 
    In January 1991, the Company and Lilly entered into the Lilly Agreement to
promote the discovery and development of serotonin receptor subtype-selective
drugs for the treatment of serotonin-related disorders. The collaboration was
extended in January 1995 for an additional four-year period expiring in December
1998. The Company and Lilly agreed to substantially increase the size of their
collaboration in October 1996.
 
    During the initial four-year term of the collaboration, Lilly provided the
Company with an aggregate of approximately $9.3 million of funding to support a
specified number of the Company's scientists who conducted research as part of
the collaboration. During the second four-year period, Lilly was originally
required to provide the Company with an aggregate of approximately $7.8 million
to continue such research support. However, as a result of the October 1996
expansion, the aggregate amount of research support to be provided by Lilly
during the second four-year period is expected to be approximately $13.2
million. All development, manufacturing, marketing and sales of drugs resulting
from the collaboration will be conducted by Lilly.
 
                                       43
<PAGE>
    The Company is also entitled to receive from Lilly payments upon the
achievement of certain drug development milestones and royalties on sales of all
drugs developed through the use of the Company's technology. Such royalties will
be payable in respect of sales in any country over the period commencing with
the date of the first commercial sale of a drug and ending with the expiration
of related patent rights in that country.
 
    Lilly paid the Company a one-time fee of $2.5 million for an exclusive
worldwide license to use all but two of the Company's existing serotonin drug
discovery systems for the development and commercialization of drugs that affect
serotonergic transmission. The Company retains the unlimited right to use two of
its existing serotonin drug discovery systems and a limited right to use all of
its other serotonin drug discovery systems in furtherance of its collaboration
with Lilly and for cross-reactivity screening in its and its other
collaborators' non-serotonin drug discovery programs. As part of the
collaboration, Lilly was also granted certain rights under several of the
Company's patents and patent applications.
 
    Lilly purchased $2.5 million of equity in Synaptic in June 1991 and in
December 1995, Lilly purchased an additional $2.5 million of equity in Synaptic
in its initial public offering pursuant to the terms of the 1995 extension.
Lilly has since sold all of such shares.
 
    MERCK AGREEMENT
 
    In November 1993, the Company and Merck entered into the Merck Agreement
pursuant to which they agreed to collaborate in the identification and
development of alpha-1a antagonists, principally for the treatment of BPH. The
initial term of the collaboration was three years. In October 1996, the term of
the collaboration was extended through November 1997.
 
    As part of the collaboration, Merck received an exclusive worldwide license
to use the Company's alpha adrenergic drug discovery systems for the development
and commercialization of alpha-1a antagonists, as well as an exclusive worldwide
license under several of the Company's related patents and patent applications.
The Company retained the right to use its alpha adrenergic technology for the
development of alpha adrenergic and other agents that are not alpha-1a
antagonists.
 
    In consideration for this license, Merck originally agreed to provide the
Company with up to $20 million in research funding, license fees and milestone
payments, as well as to pay the Company royalties on product sales. As part of
the October 1996 extension, the Company agreed to continue to provide Merck
research support and, in consideration for such support, Merck agreed to provide
the Company with continued funding. The amount of research funding to be paid by
Merck during this one-year extension is expected to be, at a minimum,
approximately $1.1 million.
 
    NOVARTIS AGREEMENTS
 
    In August 1994, the Company and Novartis entered into the First Novartis
Agreement pursuant to which they agreed to collaborate in the identification and
development of NPY drugs for the treatment of obesity and eating disorders, as
well as cardiovascular disorders. In May 1996, the Company and Novartis entered
into the Second Novartis Agreement and an amendment to the First Novartis
Agreement pursuant to which the term of the collaboration was extended by one
year and the scope of the collaboration was expanded to provide for research on
additional targets for the design of drugs for the treatment of obesity and
eating disorders.
 
    The term of the collaboration under the two Novartis Agreements expires in
August 1998, and may be extended by mutual agreement of the parties. During the
term, Novartis is required to provide the Company with funding to support a
specified number of the Company's scientists dedicated to work on the
collaboration. Through June 30, 1997, Novartis had provided the Company with an
aggregate of approximately $9.5 million in research support. The aggregate
amount of research support which the Company currently is entitled to receive
from Novartis during the remainder of the collaboration is $3.7 million.
 
                                       44
<PAGE>
    In July 1995, Novartis made a $1.0 million payment to the Company for
achieving a research milestone. Novartis is also required to make additional
payments to the Company upon the achievement by Novartis of certain drug
development milestones and, subject to certain limitations, to pay the Company
royalties on the sale of drugs developed through the use of the Company's
technology.
 
    At the commencement of the Company's collaboration with Novartis, Novartis
made a $7.5 million equity investment in the Company. In December 1995, as part
of the Company's initial public offering, Novartis made an additional $2.0
million equity investment in the Company. As of September 30, 1997, the 695,715
shares of Common Stock acquired by Novartis as a result of these investments
were held by Novartis Produkte A.G., an affiliate of Novartis. Such shares
represented 9.1% of the outstanding shares of Common Stock of the Company at
that date.
 
    As part of the collaboration, Novartis has an exclusive worldwide license to
use the Company's NPY receptor subtype drug discovery systems for the
development and commercialization of NPY receptor subtype-selective drugs for
the treatment of obesity and eating disorders, as well as cardiovascular
disorders. Novartis also has an exclusive worldwide license to use any
proprietary technology of the Company that relates to the subject matter of the
Second Novartis Agreement to design drugs for the treatment of obesity and
eating disorders. In addition, Novartis has certain rights under several of the
Company's patents and patent applications. The Company retained the right to use
its NPY receptor subtype drug discovery systems and other technology for all
other therapeutic indications, although Novartis has a right of first
negotiation in the event the Company determines to seek a collaborative partner
or licensee for any such other indication.
 
    WARNER-LAMBERT AGREEMENT
 
    In July 1997, the Company and Warner-Lambert entered into the Warner-Lambert
Agreement pursuant to which they agreed to collaborate in the identification and
development of galanin drugs for a variety of therapeutic applications. As part
of the collaboration, Warner-Lambert received an exclusive worldwide license to
use the Company's galanin receptor subtype drug discovery systems for the
development and commercialization of galanin receptor subtype-selective drugs
for all therapeutic applications.
 
    The collaboration involves two potential stages. During the first stage,
which is expected to commence by the end of 1997 and will last up to eighteen
months, each partner will fund its own research and use Synaptic's galanin
receptor subtype drug discovery systems to attempt to identify and characterize
drug candidates. The second stage of the collaboration, which will last for
three years, will commence at such time as the partners identify galanin
compounds that are active in animal models. During this stage, Warner-Lambert
and Synaptic will attempt to develop drug candidates identified during the first
stage, as well as attempt to identify additional drug candidates. Upon the
commencement of the second stage, Synaptic is entitled to receive research
funding from Warner-Lambert, as well as require Warner-Lambert to purchase
equity in Synaptic. In addition, Synaptic is entitled to receive drug
development milestones and royalties on sales of all drugs identified through
the collaboration. There can be no assurance, however, that any suitable galanin
compound will be identified which would trigger commencement of the second stage
of the collaboration or that, even assuming the commencement of such stage, a
product will result from this collaboration.
 
    OTHER AGREEMENTS
 
    The Company's practice is to meet with pharmaceutical and biotechnology
companies on an on-going basis to discuss the possibility of collaborating with
them on projects of mutual interest, which may include those of the Company's
research programs that are not yet the subject of existing collaborations. In
addition, the Company continually evaluates opportunities for out-licensing its
technology on both a collaborative basis or on a noncollaborative basis,
in-licensing third-party technologies and/or cross-licensing technology to
maximally leverage resources. At present, the Company is in the early stages of
 
                                       45
<PAGE>
discussing with other companies the possibility of a number of such
arrangements. There can be no assurance that the Company will be successful in
consummating any such arrangement.
 
    In February 1996, the Company and DuPont Merck entered into an agreement
pursuant to which the Company granted DuPont Merck a nonexclusive license to use
certain of the Company's alpha adrenergic drug discovery systems for the
development of alpha adrenergic subtype-selective drugs. The license granted to
DuPont Merck is expected to expire in February 1998.
 
PATENTS, PROPRIETARY TECHNOLOGY AND TRADE SECRETS
 
    The Company's success depends, in part, on its ability to establish, protect
and enforce its proprietary rights relating to its technology. The Company's
policy is to seek, when appropriate, protection for its gene discoveries,
compounds and other proprietary technology by filing patent applications in the
United States and other countries. The Company has filed numerous patent
applications both in the United States and in other countries covering its
inventions. To date, the Company has been issued United States patents relating
to the genes that code for the human serotonin 1B, serotonin 1D, serotonin 1E,
serotonin 1F, serotonin 2B, alpha-1a adrenergic, alpha-2b adrenergic, NPY2, NPY4
and NPY5 receptor subtypes and related drug discovery systems, as well as a
United States patent covering the rat serotonin 4a receptor subtype and related
drug discovery system. These patents expire at various times from 2008 to 2014.
Additional United States patent applications relating to the Company's receptor
gene discoveries are pending. Several corresponding patent applications have
also been filed in other countries. The failure to receive any of the foregoing
patents in respect of pending applications could have a material adverse effect
on the Company. See "Risk Factors--Uncertainty of Patent Protection; Dependence
on Proprietary Technology."
 
    In April 1995, the Company was issued its first functional use patent in the
United States. This patent covers the use of alpha-1a selective compounds for
the treatment of BPH. In addition, in November 1996, the United States Patent
and Trademark Office issued the Company an additional patent relating to the
same subject matter. These patents expire in 2012 and 2013, respectively.
Additional related patent applications are on file in the United States and
corresponding patent applications are on file in other countries.
 
    The Company has also filed patent applications in the United States and in
other countries covering its neurotransmitter transporter discoveries. Whereas
receptors are protein molecules which bind to and are activated by certain
ligands, transporters are protein molecules which serve to terminate the action
of certain ligands by carrying them back into the cells from which they are
released. The Company recently received United States patents covering two of
these transporter discoveries, as well as correspondence from the United States
Patent and Trademark Office to the effect that claims under United States patent
applications covering three other transporter discoveries have been allowed.
While the Company is no longer actively working on its transporter program, it
is seeking to license its transporter technology to another company.
 
    Additional patent applications covering the Company's compound discoveries
and other inventions have been filed in the United States and in other countries
and the Company intends to file additional patent applications in the near
future.
 
    The Company has granted certain rights under several of its patents and
patent applications to Lilly, Merck, Novartis and Warner-Lambert pursuant to the
Collaborative Agreements. See "--Collaborative Arrangements."
 
    Patent law as it relates to inventions in the biotechnology field is still
evolving, and involves complex legal and factual questions for which legal
principles are not firmly established. Accordingly, there can be no assurance
that patents will be granted with respect to any of the Company's patent
applications currently pending in the United States or in other countries, or
with respect to applications filed by the
 
                                       46
<PAGE>
Company in the future. The failure by the Company to receive patents pursuant to
the applications referred to herein and any future applications could have a
material adverse effect on the Company.
 
    There is no clear policy involving the breadth of claims allowed in patents
or the degree of protection afforded thereunder. Accordingly, no firm
predictions can be made regarding the breadth or enforceability of claims
allowed in the patents that have been issued to the Company or in patents that
may be issued to the Company in the future and there can be no assurance that
claims in the Company's patents, either as initially allowed by the United
States Patent and Trademark Office or any of its non-United States counterparts
or as subsequently interpreted by courts inside or outside the United States,
will be sufficiently broad to protect the Company's proprietary rights.
 
    Also, there can be no assurance that the Company's patents or patent
applications will not be challenged by way of interference proceedings or
opposed by third parties or that the Company will not be required to participate
in interference proceedings or oppose the patents or patent applications of
third parties in order to protect its rights. Interference and opposition
proceedings can be expensive to prosecute and defend. One of the Company's
patent applications on file outside the United States is the subject of an
opposition filed by a pharmaceutical company and one of the Company's patent
applications on file in the United States is the subject of an interference
proceeding involving an issued patent of a third party. In addition, the Company
is seeking to provoke an interference by the United States Patent and Trademark
Office between another of its patent applications and an issued patent of a
third party. The Company also believes that the United States Patent and
Trademark Office may declare an interference between another of its patent
applications and a patent application of another third party. There can be no
assurance that the outcome of the pending opposition and interference
proceedings and the anticipated interference proceedings will be favorable to
the Company. In the event that the outcome of the opposition proceeding were
unfavorable to the Company, the Company would not be issued the patent in the
country in which the proceeding is taking place and would not be able to prevent
third parties from practicing the subject matter of the opposed application in
that country. Moreover, the opponent may seek to file similar oppositions in
other countries. In the event that the outcome of the interference proceedings
were unfavorable to the Company, the Company might not be able to practice the
subject matter of the relevant patent applications in the United States.
Accordingly, an unfavorable outcome in any such proceeding would have an adverse
effect on the Company. Even if the eventual outcome of the pending opposition
and interference proceedings and the anticipated interference proceedings were
favorable to the Company, the Company's participation in them could result in
substantial cost to the Company.
 
    Further, no assurance can be given that patents issued to the Company will
not be infringed, invalidated or circumvented by others, or that the rights
granted thereunder will be commercially valuable or will provide competitive
advantages to the Company and its present or future collaborative partners or
licensees. Moreover, because patent applications in the United States are
maintained in secrecy until patents issue, because patent applications in
certain other countries generally are not published until more than eighteen
months after they are filed and because publication of technological
developments in the scientific or patent literature often lags behind the date
of such developments, the Company cannot be certain that it was the first to
invent the subject matter covered by its patents or patent applications or that
it was the first to file patent applications for such inventions. The field of
gene discovery has become intensely competitive. A number of pharmaceutical
companies, biotechnology companies, universities and research institutions have
significantly expanded their gene discovery efforts in recent years and have
filed patent applications or received patents covering their gene discoveries.
Some of these applications or patents may be competitive with the Company's
applications or conflict in certain respects with claims made under the
Company's applications. There can be no assurance that, in the event of any
conflict, the Company will be in a priority position with respect to
inventorship on any of these applications.
 
    The commercial success of the Company also depends on the Company's ability
to operate without infringing patents and proprietary rights of third parties.
The Company is aware of a large number of patents and patent applications of
third parties that contain claims to genes that code for G protein-
 
                                       47
<PAGE>
coupled receptors and/or compounds that interact with G protein-coupled
receptors. Patents issued to others may preclude the Company from using or
licensing its technology or may preclude the Company or its collaborative
partners from commercializing drugs developed with the use of the Company's
technology. The Company has acquired licenses to use certain technologies
covered by patents owned by Stanford University and the University of
California, jointly, and Columbia University. The Stanford University/
University of California license is a worldwide perpetual non-exclusive license
to use certain recombinant DNA technology that includes three issued United
States patents. In consideration for such license, the Company pays an annual
fee of $10,000 and will pay royalties (net of previously paid annual fees) on
sales of drugs the manufacture, use or sale of which is covered by claims of the
licensed patents. The Columbia University license is a worldwide non-exclusive
license to manufacture, use, sell and sublicense drugs derived from the use of
certain recombinant DNA technology, including a United States patent. In
consideration for such license, the Company has agreed to pay royalties on sales
of drugs developed through the use of such license. The term of the license
extends until the expiration of the last to expire of the patent rights covered
by the license. The Company may be required to obtain additional licenses to
patents or other proprietary rights of other parties in order to pursue its own
technologies. No assurance can be given that any such additional licenses would
be made available on terms acceptable to the Company, if at all. The failure to
obtain such licenses could result in delays in the Company's or its
collaborative partners' activities, including the development, manufacture or
sale of drugs requiring such licenses, or preclude such development, manufacture
or sale. See "Risk Factors--Uncertainty of Patent Protection; Dependence on
Proprietary Technology" and "--Collaborative Arrangements."
 
    In some cases, litigation or other proceedings may be necessary to assert
infringement claims against others, to defend against claims of infringement, to
enforce patents issued to the Company, to protect trade secrets, know-how or
other intellectual property rights owned by the Company, or to determine the
scope and validity of the proprietary rights of third parties. Such litigation
could result in substantial costs to and diversion of resources by the Company
and could have a material adverse effect on the Company. There can be no
assurance that any of the Company's patents would ultimately be held valid or
that efforts to defend any of its patents, trade secrets, know-how or other
intellectual property rights would be successful. An adverse outcome in any such
litigation or proceeding could subject the Company to significant liabilities,
require the Company to cease using the subject technology or require the Company
to license the subject technology from the third party, all of which could have
a material adverse effect on the Company's business.
 
    In addition to patent protection, the Company relies upon trade secrets,
proprietary know-how and continuing technological advances to develop and
maintain its competitive position. To maintain the confidentiality of its trade
secrets and proprietary information, the Company requires its employees,
consultants and collaborative partners to execute confidentiality agreements
upon the commencement of their relationships with the Company. In the case of
employees, the agreements also provide that all inventions resulting from work
performed by them while in the employ of the Company will be the exclusive
property of the Company. There can be no assurance, however, that these
agreements will not be breached, that the Company would have adequate remedies
in the event of any such breach or that the Company's trade secrets or
proprietary information will not otherwise become known or developed
independently by others.
 
COMPETITION
 
    The Company operates in a field in which new developments occur and are
expected to continue to occur at a rapid pace. Competition from biotechnology
and pharmaceutical companies, joint ventures, academic and other research
institutions and others is intense and is expected to increase. Although the
Company is a leader in the development of human receptor-targeted drug design
technology and believes that the elements of this technology and the manner in
which the Company has integrated these elements are proprietary to the Company,
one or more of such elements are currently employed by many other
 
                                       48
<PAGE>
pharmaceutical and biotechnology companies in their drug discovery efforts.
Moreover, although the Company believes that it has identified new and distinct
approaches to drug discovery, there are other companies with drug discovery
programs at least some of the objectives of which are the same as or similar to
those of the Company. The Company is aware of many pharmaceutical and
biotechnology companies that are engaged in efforts to develop compounds that
interact with G protein-coupled receptors subtypes, including receptor subtypes
with which the Company is working. Many of the Company's competitors are large
biotechnology companies and multinational pharmaceutical companies who may
employ in such activities greater financial and other resources, including
larger research and development staffs and more extensive marketing and
manufacturing organizations, than the Company or its collaborative partners. See
"Risk Factors--Substantial Competition; Risk of Technological Obsolescence."
 
    The Company also expects to encounter significant competition with respect
to the drugs that it and its collaborative partners plan to develop. Companies
that complete clinical trials, obtain required regulatory approvals and commence
commercial sales of their drugs before their competitors may achieve a
significant competitive advantage. In order to compete successfully, the
Company's goal is to obtain patent protection for its gene discoveries and drug
discovery systems and to make these systems available to pharmaceutical
companies through collaborative and licensing arrangements for use in
discovering drugs for major markets which have historically been difficult to
address using the traditional approach to drug discovery. There can be no
assurance, however, that the Company will obtain patents covering its technology
that protect it against competitors. Moreover, there can be no assurance that
the Company's competitors will not succeed in developing technologies that
circumvent the Company's technology or that such competitors will not succeed in
developing technologies and drugs that are more effective than those developed
by the Company and its collaborative partners or that would render technology or
drugs of the Company and its collaborators less competitive or obsolete. In
addition, there can be no assurance that competitors of the Company will not
obtain regulatory approvals of their drugs more rapidly than the Company and its
collaborative partners, thereby rendering the Company's and its collaborative
partners'drugs noncompetitive or obsolete. Moreover, there can be no assurance
that the Company's competitors will not obtain patent protection or other
intellectual property rights that would limit the Company's or its collaborative
partners' ability to use the Company's technology or commercialize its or their
drugs. See "Risk Factors--Uncertainty of Patent Protection; Dependence on
Proprietary Technology" and "Risk Factors--Substantial Competition; Risk of
Technological Obsolescence."
 
GOVERNMENT REGULATION
 
    The development, manufacturing and marketing of drugs developed through the
use of the Company's technology are subject to regulation by numerous Regulatory
Agencies in the United States and in other countries. See "Risk
Factors--Stringent Government Regulation; No Assurance of Regulatory Agency
Approval." The FDA and comparable Regulatory Agencies in other countries impose
mandatory procedures and standards for the conduct of certain preclinical
testing and clinical trials and the production and marketing of drugs for human
therapeutic use. Product development and approval of a new drug are likely to
take many years and involve the expenditure of substantial resources.
 
    The steps required by the FDA before new drugs may be marketed in the United
States include: (i) preclinical studies; (ii) the submission to the FDA of a
request for authorization to conduct clinical trials on an investigational new
drug; (iii) adequate and well-controlled clinical trials to establish the safety
and efficacy of the drug for its intended use; (iv) submission to the FDA of an
NDA; and (v) review and approval of the NDA by the FDA before the drug may be
shipped or sold commercially.
 
    In the United States, preclinical testing includes both IN VITRO and IN VIVO
laboratory evaluation and characterization of the safety and efficacy of a drug
and its formulation. Laboratories involved in preclinical testing must comply
with FDA regulations regarding Good Laboratory Practices. Preclinical testing
results are submitted to the FDA as part of the IND and are reviewed by the FDA
prior to the commencement of human clinical trials. Unless the FDA objects to an
IND, the IND will become effective
 
                                       49
<PAGE>
30 days following its receipt by the FDA. There can be no assurance that
submission of an IND will result in the commencement of human clinical trials.
 
    Clinical trials, which involve the administration of the investigational
drug to healthy volunteers or to patients under the supervision of a qualified
principal investigator, are typically conducted in three sequential phases,
although the phases may overlap with one another. Clinical trials must be
conducted in accordance with Good Clinical Practices under protocols that detail
the objectives of the study, the parameters to be used to monitor safety and the
efficacy criteria to be evaluated. Each protocol must be submitted to the FDA as
part of the IND. Further, each clinical study must be conducted under the
auspices of an independent Institutional Review Board (the "IRB") at the
institution where the study will be conducted. The IRB will consider, among
other things, ethical factors, the safety of human subjects and the possible
liability of the institution. Compounds must be formulated according to the GMP.
 
    Phase I clinical trials represent the initial administration of the
investigational drug to a small group of healthy human subjects or, more rarely,
to a group of selected patients with the targeted disease or disorder. The goal
of Phase I clinical trials is typically to test for safety (adverse effects),
dose tolerance, absorption, bio-distribution, metabolism, excretion and clinical
pharmacology and, if possible, to gain early evidence regarding efficacy.
 
    Phase II clinical trials involve a small sample of the actual intended
patient population and seek to assess the efficacy of the drug for specific
targeted indications, to determine dose tolerance and the optimal dose range and
to gather additional information relating to safety and potential adverse
effects.
 
    Once an investigational drug is found to have some efficacy and an
acceptable safety profile in the targeted patient population, Phase III clinical
trials are initiated to establish further clinical safety and efficacy of the
investigational drug in a broader sample of the general patient population at
geographically dispersed study sites in order to determine the overall
risk-benefit ratio of the drug and to provide an adequate basis for all
physician labeling. The results of the research and product development,
manufacturing, preclinical testing, clinical trials and related information are
submitted to the FDA in the form of an NDA for approval of the marketing and
shipment of the drug.
 
    Timetables for the various phases of clinical trials and NDA approval cannot
be predicted with any certainty. The Company, its collaborative partners or the
FDA may suspend clinical trials at any time if it is believed that individuals
participating in such trials are being exposed to unacceptable health risks.
Even assuming that clinical trials are completed and that an NDA is submitted to
the FDA, there can be no assurance that the NDA will be reviewed by the FDA in a
timely manner or that once reviewed, the NDA will be approved. The approval
process is affected by a number of factors, including the severity of the
targeted indications, the availability of alternative treatments and the risks
and benefits demonstrated in clinical trials. The FDA may deny an NDA if
applicable regulatory criteria are not satisfied, or may require additional
testing or information with respect to the investigational drug. Data obtained
from preclinical and clinical activities are susceptible to varying
interpretations which could also delay, limit or prevent Regulatory Agency
approval. Even if initial FDA approval is obtained, further studies, including
post-market studies, may be required in order to provide additional data on
safety and will be required in order to gain approval for the use of a product
as a treatment for clinical indications other than those for which the product
was initially tested. The FDA will also require post-market reporting and may
require surveillance programs to monitor the side effects of the drug. Results
of post-marketing programs may limit or expand the further marketing of the
drug. Further, if there are any modifications to the drug, including changes in
indication, manufacturing process or labeling, an NDA supplement may be required
to be submitted to the FDA. Finally, delays or rejections may be encountered
based upon changes in Regulatory Agency policy during the period of drug
development and/or the period of review of any application for Regulatory Agency
approval for a compound. Moreover, because the Company's present collaborative
partners are, and its future collaborative partners may be, responsible for
preclinical testing, clinical trials, regulatory approvals, manufacturing and
commercialization of drugs, the ability to obtain
 
                                       50
<PAGE>
and the timing of regulatory approvals are not, and in the future may not be,
within the control of the Company. There can be no assurance that the regulatory
framework described above will not change or that additional regulations will
not arise that may affect approval of a potential drug.
 
    Each manufacturing establishment for new drugs is required to receive some
form of approval by the FDA. Among the conditions for such approval is the
requirement that the prospective manufacturer's quality control and
manufacturing procedures conform to GMP, which must be followed at all times. In
complying with standards set forth in these regulations, manufacturers must
continue to expend time, monies and effort in the area of production and quality
control to ensure full technical compliance. Manufacturing establishments, both
foreign and domestic, are also subject to inspections by or under the authority
of the FDA and may be subject to inspections by foreign and other Federal, state
or local agencies.
 
    Prior to the commencement of marketing a product in other countries,
approval by the Regulatory Agencies in such countries is required, regardless of
whether FDA approval has been obtained for such product. The requirements
governing the conduct of clinical trials and product approvals vary widely from
country to country, and the time required for approval may be longer or shorter
than the time required for FDA approval. Although there are some procedures for
unified filings for certain European countries, in general, each country has its
own procedures and requirements.
 
    Delays in obtaining Regulatory Agency approvals could adversely affect the
marketing of any drugs developed by the Company or its collaborative partners,
impose costly procedures upon the Company's or its collaborative partners'
activities, diminish any competitive advantages that the Company or its
collaborative partners may attain and adversely affect the Company's ability to
receive revenues or royalties. There can be no assurance that, even after such
time and expenditures, Regulatory Agency approvals will be obtained for any
compounds developed by or in collaboration with the Company. Moreover, even if
Regulatory Agency approval for a compound is granted, such approval may entail
limitations on the indicated uses for which it may be marketed. Further,
approved drugs and their manufacturers are subject to continual review, and
discovery of previously unknown problems with a drug or its manufacturer may
result in restrictions on such drug or manufacturer, including withdrawal of the
drug from the market. Regulatory Agency approval of prices is required in many
countries and may be required for the marketing of any drug developed by the
Company or its collaborative partners.
 
    As with many biotechnology and pharmaceutical companies, the Company's
activities involve the use of radioactive compounds and hazardous materials. The
Company is subject to local, state and Federal laws and regulations relating to
occupational safety, laboratory practices, the use, handling and disposition of
radioactive materials, environmental protection and hazardous substance control.
Although the Company believes that its safety procedures for handling and
disposing of radioactive compounds and other hazardous materials used in its
research and development activities comply with the standards prescribed by
Federal, state and local regulations, the risk of accidental contamination or
injury from these materials cannot be completely eliminated. In the event of any
such accident, the Company could be held liable for any damages that result and
any such liability could exceed the resources of the Company.
 
SCIENTIFIC CONSULTANTS
 
    The Company has consulting arrangements with a number of leading academic
scientists. The consultants attend project meetings on an AD HOC basis and are
frequently contacted by the scientific staff and management for advice. Most of
the Company's consultants are paid for their services on a per diem basis and
are reimbursed for their travel expenses and other expenses incurred at the
request of the Company pursuant to the terms of their consulting arrangements
with the Company. Certain other consultants are paid fixed fees for their
services on a monthly or quarterly basis. Many of the Company's consultants,
including several of those identified below, have purchased shares of Common
Stock and have
 
                                       51
<PAGE>
written contracts with the Company pursuant to which they are required to
provide to the Company a minimum number of days per year of consulting services.
 
    The average per diem rate at which the Company pays its consultants is
approximately $2,000 and the average number of days per annum that these
individuals provide consulting services to the Company is four. During the
fiscal year ended December 31, 1996, and the six months ended June 30, 1997, the
Company recognized consulting expense of $114,000 and $86,000, respectively.
 
    None of the consultants is an employee of the Company. Most of the
consultants have other commitments to, or consulting or advisory contracts with,
their employers and other institutions.
 
    The Company's consultants include the following individuals:
 
    DAVID E. CLARKE, PH.D., is a Consultant Scientist for Drug Discovery based
in Royston, UK. He is an expert in the identification of receptor subtypes and
their relation to physiological function and therapeutic significance. He was
previously Distinguished Scientist and Head of the Department of Mechanistic
Studies in the Neurobiology Research Unit and the Institute of Pharmacology at
Syntex/Roche in the United States where he spent eight years in drug discovery.
Prior to entering the industry, Dr. Clarke was a Professor of Pharmacology at
the University of Houston, where he spent sixteen years, including four years as
Chairman. He is the recipient of numerous honors in pharmacology. Dr. Clarke
provides assistance to the Company in the broad field of pharmacology. Dr.
Clarke has been a consultant to the Company since 1996.
 
    RALPH HIRSCHMANN, PH.D., is Rao Makineni Professor of Bioorganic Chemistry
at the University of Pennsylvania. Prior to joining the faculty of the
University of Pennsylvania, Dr. Hirschmann was with Merck, where he held a
number of positions, including, at his retirement in 1987, the position of
Senior Vice President--Chemistry. Dr. Hirschmann is an expert in medicinal
chemistry, with particular emphasis on peptide synthesis, the design of
peptidomimetics and drug-receptor interactions. Dr. Hirschmann has published
over 130 papers and is an inventor on approximately 100 patents from his work at
Merck and the University of Pennsylvania. Dr. Hirschmann has received numerous
awards, including the Nichols Medal (1988), the Gold Medal of the Max Bergmann
Kreis (1993) and the Alfred Burger Award of the American Chemical Society
(1994). Dr. Hirschmann has been a consultant to the Company since early 1995,
providing assistance to the Company in connection with its drug discovery
programs.
 
    HENRY A. LESTER, PH.D., is Professor of Biology at the California Institute
of Technology, and an expert in transmitter receptors, transporters and ion
channels. Dr. Lester is a Senator Jacob Javits Investigator of the National
Institutes of Health, and the winner of several scientific awards and directs
the National Institute of Mental Health Center for Neuroscience at the
California Institute of Technology. Dr. Lester provides assistance to the
Company in connection with the Company's research programs. Dr. Lester has been
a consultant to the Company since 1989.
 
    RICHARD MILLER, PH.D., is William B. Mabie Professor of Neuroscience in the
Department of Pharmacology and Physiological Sciences at the University of
Chicago, and an expert in molecular pharmacology. Dr. Miller is the winner of
several scientific awards including the John Jacob Abel Award (1983) and an
Alfred P. Sloan Research Fellowship. Dr. Miller provides assistance to the
Company in connection with the Company's research programs. Dr. Miller has been
a consultant to the Company since 1989.
 
    DAVID J. TRIGGLE, PH.D., is Dean of the School of Pharmacy and University
Distinguished Professor at the State University of New York, University of
Buffalo. Dr. Triggle is an expert in medicinal chemistry and drug design with
particular emphasis on receptors and ion channels. He has published over 350
papers, books and book chapters in the fields of medicinal chemistry and
pharmacology. Dr. Triggle has received a number of scientific awards including
the Volweiler Research Achievement Award (1988). Dr. Triggle provides assistance
in connection with the Company's drug discovery and pharmacology efforts. Dr.
Triggle has been a consultant to the Company since 1991.
 
                                       52
<PAGE>
EMPLOYEES
 
    As of June 30, 1997, the Company had 117 full-time employees, 40 of whom
hold Ph.D. or M.D. degrees. Of the Company's full-time employees, approximately
100 are engaged directly in scientific research and 17 are engaged in general
and administrative functions. The Company's scientific staff members have
diversified experience and expertise in molecular and cell biology,
biochemistry, molecular pharmacology, medicinal, structural, combinatorial and
computer-assisted chemistry and information systems.
 
    All employees have entered into agreements with the Company pursuant to
which they are prohibited from disclosing to third parties the Company's
proprietary information and assign to the Company all rights to inventions made
by them during their employment with the Company. See "--Patents, Proprietary
Technology and Trade Secrets."
 
    The Company's employees are not covered by a collective bargaining
agreement, and the Company believes that its relationship with its employees is
good.
 
FACILITIES
 
    The Company leases laboratory and office space in a facility at 215 College
Road in Paramus, New Jersey. The total square footage currently leased by the
Company is 41,274. The Company is currently converting a portion of its space
into research laboratories. The current expiration date of the lease is December
31, 1999. However, the Company is in the process of negotiating an amendment to
the lease which would extend the term through the year 2014 and increase its
leased space to approximately 74,000 square feet. See "Use of Proceeds."
 
LEGAL PROCEEDINGS
 
    Other than as described under "--Patents, Proprietary Technology and Trade
Secrets," the Company is not a party to any legal proceedings. See "Risk
Factors--Uncertainty of Patent Protection; Dependence on Proprietary
Technology." However, future drug development could expose the Company to
product liability claims. See "Risk Factors--Product Liability and Insurance
Risks."
 
                                       53
<PAGE>
                                   MANAGEMENT
 
    The executive officers and directors of the Company are as follows:
 
<TABLE>
<CAPTION>
NAME                                             AGE                       POSITION
- -------------------------------------------      ---      -------------------------------------------
<S>                                          <C>          <C>
Kathleen P. Mullinix, Ph.D.................          53   Chairman of the Board of Directors,
                                                          President, Chief Executive Officer
Robert I. Taber, Ph.D......................          61   Senior Vice President for Research and
                                                          Development
Robert L. Spence...........................          50   Senior Vice President, Chief Financial
                                                          Officer and Treasurer
Lisa L. Reiter.............................          38   Vice President, General Counsel and
                                                          Secretary
Richard L. Weinshank, Ph.D.................          41   Vice President of Business Development
Jonathan J. Fleming........................          40   Director
Zola P. Horovitz, Ph.D.....................          62   Director
Eric R. Kandel, M.D........................          67   Director
John E. Lyons..............................          71   Director
Sandra Panem, Ph.D.........................          51   Director
Alison Taunton-Rigby, Ph.D.................          53   Director
</TABLE>
 
    KATHLEEN P. MULLINIX, PH.D., Chairman of the Board, President and Chief
Executive Officer, is one of the founders of the Company. Dr. Mullinix joined
the Company in October 1987 as its Senior Vice President and Treasurer and
became a director in November 1987. In November 1988, Dr. Mullinix became the
Company's President, in October 1989, Dr. Mullinix became the Company's Chief
Executive Officer and in April 1996, Dr. Mullinix became the Chairman of the
Board. From 1981 until 1987, Dr. Mullinix was Vice Provost of Columbia
University in the City of New York. Dr. Mullinix holds a Ph.D. in Chemical
Biology from Columbia University in the City of New York, completed a
Postdoctoral Fellowship at Harvard University and received a B.A. in Chemistry
from Trinity College.
 
    ROBERT I. TABER, PH.D., Senior Vice President for Research and Development,
joined the Company in February 1994. From 1991 until 1994, Dr. Taber was Vice
President of Pharmaceuticals Research, responsible for research in all
therapeutic areas, and, most recently, Vice President, Extramural Research and
Development, responsible for acquisition of technology, at The DuPont Merck
Pharmaceutical Company. From 1982 until 1990, Dr. Taber held senior management
positions at DuPont Pharmaceuticals, including the position of Director,
Pharmaceutical and Biotechnology Research, which involved responsibility for all
drug discovery research. From 1974 until 1982, Dr. Taber held several positions
of increasing responsibility, including the position of Director of Biological
Research, responsible for all biology in new drug discovery at Schering-Plough
Pharmaceutical Research Division. Dr. Taber holds a Ph.D. in Pharmacology from
the Medical College of Virginia and a B.S. in Pharmacy from Rutgers University.
 
    ROBERT L. SPENCE, Senior Vice President, Chief Financial Officer and
Treasurer, joined the Company in March 1990 as the Company's Controller. In June
1991, Mr. Spence became the Company's Chief Financial Officer, Treasurer and
Secretary. Mr. Spence held the position of Secretary until February 1994. In
December 1996, Mr. Spence became a Senior Vice President of the Company. During
the twenty years prior to his joining the Company, Mr. Spence held various
financial and operating positions with Becton Dickinson & Company, a medical
supplies manufacturing and distribution company. His last position with Becton
Dickinson before he joined the Company was Director of Finance and Operations of
the Primary Care Diagnostics Division. Mr. Spence holds an M.B.A. in Accounting
and a B.S. in Business Management from Fairleigh Dickinson University.
 
                                       54
<PAGE>
    LISA L. REITER, Vice President, General Counsel and Secretary, joined the
Company in February 1994 as General Counsel and Secretary. In September 1995,
Ms. Reiter became a Vice President of the Company. From 1985 to 1994, Ms. Reiter
was an attorney with the law firm of O'Sullivan Graev & Karabell in New York
City. Ms. Reiter holds an LL.M. in Taxation from New York University School of
Law, a J.D. from The University of Houston Law Center and a B.A. from Vanderbilt
University.
 
    RICHARD L. WEINSHANK, PH.D., Vice President of Business Development, joined
the Company in October 1988 as Staff Scientist in the Company's Molecular and
Cell Biology Department. In March 1990, Dr. Weinshank assumed the position of
Director, Department of Molecular and Cell Biology, and in February 1995, became
Director of Business Development. In January 1996, Dr. Weinshank became Vice
President of Business Development. From April 1985 to September 1988, Dr.
Weinshank was a Postdoctoral Fellow at Memorial Sloan-Kettering Cancer Center.
Dr. Weinshank holds a B.A. in Philosophy from The State University of New York
at Buffalo and a Ph.D. in Biochemistry from The University of California at
Riverside.
 
    JONATHAN J. FLEMING, has served as a director of the Company since October
1989. Mr. Fleming served as Chairman of the Board from October 1989 through
March 1996. He has been a general partner of Oxford Bioscience Partners II
Management Corp., a venture capital fund manager, since 1996. Mr. Fleming has
also been a general partner of MVP Ventures, an international venture capital
group active in both Europe and North America, since 1988. From 1985 to 1988,
Mr. Fleming was a Vice President of TVM Techno Venture Management, a venture
capital firm. Mr. Fleming is a director of Selfcare Inc., a healthcare company,
and is also a director of several private companies. Mr. Fleming received a B.A.
from The University of California at Berkeley and an M.P.A. in Industrial
Economics from Princeton University.
 
    ZOLA P. HOROVITZ, PH.D., became a director of the Company in September 1994.
Since 1994, Dr. Horovitz has served as a consultant to biotechnology and
pharmaceutical companies. From August 1991 to May 1994, Dr. Horovitz served as
Vice President, Business Development and Planning, Pharmaceutical Group of
Bristol-Myers Squibb ("BMS"). From 1989 to 1991, Dr. Horovitz served as Vice
President, Licensing of BMS, and from 1987 to 1989, Dr. Horovitz served as Vice
President, Scientific Liaison of E.R. Squibb, Inc. Prior to 1987, Dr. Horovitz
spent approximately 30 years in various management positions in biological
research. Dr. Horovitz is also a director of Avigene Inc., Biocryst
Pharmaceuticals, Clinicor Inc., Diacrin, Inc., Magainin Pharmaceuticals, Phyton
Inc., Procept, Inc. and Roberts Pharmaceutical Corporation and a number of
private companies.
 
    ERIC R. KANDEL, M.D., is one of the founders of the Company. He has been a
director of and consultant to the Company since 1987. Dr. Kandel has been
University Professor of Columbia University in the City of New York since 1983,
and a Senior Investigator of the Howard Hughes Institute since 1984. In
addition, Dr. Kandel is the founding director of the Center for Neurobiology and
Behavior of Columbia University in the City of New York, a member of the
National Academy of Sciences and the winner of numerous awards and honors,
including the National Medal of Science (1988) and the Lasker Award. Dr. Kandel
is the co-author with James H. Schwartz and Thomas J. Jessel of PRINCIPLES OF
NEURAL SCIENCE, the standard textbook in neurobiology, and a leading figure in
neuroscience.
 
    JOHN E. LYONS, became a director of the Company in October 1991. From 1987
until his retirement in 1991, Mr. Lyons served as Vice Chairman and Executive
Vice President of Merck and Co., Inc. During the 35 years prior to becoming
Executive Vice President, Mr. Lyons served Merck in a variety of positions. Mr.
Lyons is also a director of Matrix Pharmaceutical Corporation and Immunex
Corporation. Mr. Lyons holds a B.Sc. in Chemistry from Fordham University.
 
    SANDRA PANEM, PH.D., became a director of the Company in April 1996. Since
August 1994, Dr. Panem has been the President of Vector Fund Management, L.P.,
an affiliate of Vector Securities International, Inc., and is responsible for
managing the operations of the Vector Later-Stage Equity Fund, L.P., and Vector
Later-Stage Equity Fund II, L.P., funds the principal focus of which is
investing in emerging life
 
                                       55
<PAGE>
science companies. From 1992 to 1994, Dr. Panem served as Vice President and
Portfolio Manager for the Oppenheimer Global BioTech Fund, a mutual fund that
invested in biotechnology companies. She received a B.S. degree in Biochemistry
and a Ph.D. in Microbiology from the University of Chicago. Dr. Panem is a
director of Martek Biosciences Corporation and IBAH, Inc. and two private
companies.
 
    ALISON TAUNTON-RIGBY, PH.D., became a director of the Company in October
1993. Since 1996, Dr. Taunton-Rigby has been the President and Chief Executive
Officer of Aquila Biopharmaceuticals, Inc, the successor-in-interest of the
therapeutics business of Cambridge Biotech Corporation. From 1995 to 1996, Dr.
Taunton-Rigby was the President and Chief Executive Officer of Cambridge Biotech
Corporation. In 1995, prior to Dr. Taunton-Rigby's joining the company,
Cambridge Biotech filed a Chapter 11 petition in Federal Bankruptcy Court. From
1993 to 1994, Dr. Taunton-Rigby was the Chief Executive Officer of Mitotix,
Inc., another biotechnology company. From 1987 to 1993, Dr. Taunton-Rigby was
Senior Vice President, Biotherapeutics at Genzyme Corporation. Dr. Taunton-Rigby
is also a director of Aquila Biopharmaceuticals, Inc. and CML Group. Dr.
Taunton-Rigby is a graduate of the Advanced Management Program at Harvard
Business School and holds a Ph.D. in Chemistry and a B.Sc. in Chemistry from the
University of Bristol in England.
 
                                       56
<PAGE>
                             PRINCIPAL STOCKHOLDERS
 
    The following table sets forth certain information regarding the beneficial
ownership of the Common Stock as of August 31, 1997, and as adjusted to reflect
to the sale of the shares of the Common Stock offered hereby by the Company, by
(i) each person known by the Company to be the beneficial owner of more than 5%
of its outstanding Common Stock, (ii) each of the Company's directors, (iii)
each of the executive officers and (iv) all directors and executive officers as
a group.
 
<TABLE>
<CAPTION>
                                                                                                     PERCENTAGE OF
                                                                                                        TOTAL(2)
                                                                                                ------------------------
                                                                                                  BEFORE        AFTER
NAME AND ADDRESS OF BENEFICIAL OWNER(1)                                                          OFFERING     OFFERING
- -----------------------------------------------------------------------------------             -----------  -----------
<S>                                                                                  <C>        <C>          <C>
BVF Partners L.P.(3)...............................................................    849,992        11.1%        8.4%
  333 West Wacker Drive
  Suite 1600
  Chicago, Illinois 60606
Novartis Produkte A.G..............................................................    695,715         9.1%        6.9%
  Klybeckstrasse 141
  CH-4002 Basel
  Switzerland
T. Rowe Price Associates, Inc.(4)..................................................    617,361         8.1%        6.1%
  100 East Pratt Street
  Baltimore, Maryland 21202
Weiss, Peck & Greer, L.L.C.(5).....................................................    405,400         5.3%        4.0%
  One New York Plaza
  New York, New York 10004
Jonathan J. Fleming(6).............................................................    283,377         3.7%        2.8%
Zola P. Horovitz, Ph.D.(7).........................................................      6,774       *            *
Eric R. Kandel, M.D.(8)............................................................     39,121       *            *
John E. Lyons(9)...................................................................      6,671       *            *
Kathleen P. Mullinix, Ph.D.(10)....................................................    212,287         2.7%        2.1%
Sandra Panem, Ph.D.(11)............................................................      3,074       *            *
Alison Taunton-Rigby, Ph.D.(12)....................................................      6,774       *            *
Lisa L. Reiter(13).................................................................     20,056       *            *
Robert L. Spence(14)...............................................................     47,741       *            *
Robert I. Taber, Ph.D.(15).........................................................     34,089       *            *
Richard L. Weinshank, Ph.D.(16)....................................................     19,966       *            *
All executive officers and directors as a group (11 persons) (17)..................    679,930         8.7%        6.6%
</TABLE>
 
- ------------------------
*    Less than 1%.
 
(1) Except as otherwise indicated above, the address of each stockholder
    identified above is c/o the Company, 215 College Road, Paramus, New Jersey
    07652. Except as indicated in the other footnotes to this table, the persons
    named in this table have sole voting and investment power with respect to
    all shares of Common Stock.
 
(2) Percentage of ownership is based on 7,648,447 shares of Common Stock
    outstanding on August 31, 1997, and is calculated pursuant to Rule
    13d-3(d)(1) of the Securities Exchange Act of 1934, as amended (the
    "Exchange Act"). Share ownership in the case of each person listed above
    includes shares issuable upon the exercise of options held by such person as
    of August 31, 1997, that may be exercised within 60 days after such date for
    purposes of computing the percentage of Common Stock owned by such person,
    but not for purposes of computing the percentage of Common Stock owned by
    any other person.
 
(3) These shares of Common Stock are beneficially owned by BVF Partners L.P.
    ("Partners"), and BVF Inc. ("BVF Inc."), the general partner and investment
    advisor to Partners. Partners is the general partner of Biotechnology Value
    Fund, L.P. ("BVF, L.P."), an investment limited partnership which
    beneficially owns 458,592 of such shares. BVF, L.P. disclaims beneficial
    ownership of the 391,400 shares beneficially owned by Partners on behalf of
    certain managed investment accounts. The foregoing information relating to
    Partners, BVF Inc. and BVF, L.P. was obtained from a Schedule 13D filed
    jointly by Partners, BVF, L.P. and BVF Inc. on July 9, 1997, with the
    Securities and Exchange Commission ("Commission").
 
(4) These shares are owned by various individual and institutional investors to
    which T. Rowe Price Associates, Inc. ("Price Associates") serves as
    investment adviser with power to direct investments and/or sole power to
    vote the securities. For purposes
 
                                       57
<PAGE>
    of the reporting requirements of the Exchange Act, Price Associates is
    deemed to be a beneficial owner of such shares; however, Price Associates
    expressly disclaims that it is, in fact, the beneficial owner of such
    securities. The information relating to Price Associates contained herein is
    based on a Schedule 13F filed by such entity with the Commission as of June
    30, 1997, as reported by Nasdaq Online-TM-.
 
(5) Weiss, Peck & Greer, L.L.C. ("WPG") is registered as a broker-dealer under
    the Exchange Act and is an investment adviser under the Investment Advisers
    Act of 1940, as amended, and holds these shares for the discretionary
    accounts of certain clients. Under the Exchange Act, WPG may be deemed to be
    a beneficial owner of such shares. WPG and each of its principals expressly
    disclaim beneficial ownership of such shares. The information relating to
    WPG contained herein is based on a Schedule 13F filed by such entity with
    the Commission as of June 30, 1997, as reported by Nasdaq Online-TM-.
 
(6) Consists of an aggregate of (a) 279,703 shares of Common Stock held by
    Chestnut III Limited Partnership ("CIII"), Chestnut Capital International
    III Limited Partnership ("CCI"), MVP Investors Limited Partnership ("MVP"),
    Late Stage Fund 1990 Limited Partnership ("LSFI") and Late Stage Fund 1991
    Limited Partnership ("LSFII"), (b) 200 shares of Common Stock owned by the
    individual retirement account of Amy Fleming, Mr. Fleming's spouse, (c) 200
    shares of Common Stock owned by the individual retirement account of Mr.
    Fleming, (d) 1,000 shares of Common Stock owned jointly by Mr. Fleming and
    his spouse, Amy Fleming and (e) 2,274 shares of Common Stock which Mr.
    Fleming has the right to acquire within 60 days after August 31, 1997. Mr.
    Fleming, a director of the Company, is a general partner of each of (i) MVP
    Capital Limited Partnership, which is investment general partner of CCI,
    LSFI and LSFII, (ii) Chestnut III Management Limited Partnership, which is
    investment general partner of CIII and (iii) MVP. Mr. Fleming has shared
    voting and investment power with respect to the shares referred to in the
    foregoing clause (a) and may be deemed to be the beneficial owner of such
    shares. Mr. Fleming disclaims beneficial ownership of all of such shares,
    except those shares representing his pro rata interest in the partnerships
    referred to therein. Mr. Fleming may also be deemed to be the beneficial
    owner of the other shares referred to in the foregoing clauses (b) through
    (e). Mr. Fleming expressly disclaims beneficial ownership of the shares
    referred to in clause (b).
 
(7) Consists of an aggregate of (a) 4,500 shares of Common Stock and (b) 2,274
    shares of Common Stock which Dr. Horovitz has the right to acquire within 60
    days after August 31, 1997.
 
(8) Consists of an aggregate of (a) 36,847 shares of Common Stock and (b) 2,274
    shares of Common Stock which Dr. Kandel has the right to acquire within 60
    days after August 31, 1997.
 
(9) Consists of an aggregate of (a) 4,397 shares of Common Stock and (b) 2,274
    shares of Common Stock which Mr. Lyons has the right to acquire within 60
    days after August 31, 1997.
 
(10) Consists of an aggregate of (a) 92,210 shares of Common Stock, (b) 379
    shares of Common Stock owned by the individual retirement account of Dr.
    Mullinix and (c) 119,698 shares of Common Stock which Dr. Mullinix has the
    right to acquire within 60 days after August 31, 1997.
 
(11) Consists of an aggregate of (a) 800 shares of Common Stock and (b) 2,274
    shares of Common Stock which Dr. Panem has the right to acquire within 60
    days after August 31, 1997.
 
(12) Consists of an aggregate of (a) 4,500 shares of Common Stock and (b) 2,274
    shares of Common Stock which Dr. Taunton-Rigby has the right to acquire
    within 60 days after August 31, 1997.
 
(13) Consists of an aggregate of (a) 853 shares of Common Stock and (b) 19,203
    shares of Common Stock which Ms. Reiter has the right to acquire within 60
    days after August 31, 1997.
 
(14) Consists of an aggregate of (a) 31,708 shares of Common Stock, (b) 7,684
    shares of Common Stock held by Linda Spence, Mr. Spence's spouse, as
    custodian for Blake Spence, Mr. Spence's son, under the Uniform Gifts to
    Minors Act, and (c) 8,349 shares of Common Stock which Mr. Spence has the
    right to acquire within 60 days after August 31, 1997. Mr. Spence disclaims
    beneficial ownership of the shares held by Linda Spence.
 
(15) Consists of an aggregate of (a) 20,427 shares of Common Stock and (b)
    13,662 shares of Common Stock which Dr. Taber has the right to acquire
    within 60 days after August 31, 1997.
 
(16) Consists of an aggregate of (a) 5,684 shares of Common Stock and (b) 14,282
    shares of Common Stock which Dr. Weinshank has the right to acquire within
    60 days after August 31, 1997.
 
(17) Includes (a) 491,092 shares of Common Stock and (b) 188,838 shares of
    Common Stock which such persons have the right to acquire within 60 days of
    August 31, 1997. Included are shares held by venture capital funds with
    which directors and officers listed above are associated.
 
                                       58
<PAGE>
                          DESCRIPTION OF CAPITAL STOCK
 
    At September 30, 1997, the authorized capital stock of the Company consisted
of 25,000,000 shares of Common Stock, $.01 par value, and 1,000,000 shares of
Preferred Stock, $.01 par value.
 
COMMON STOCK
 
    Holders of Common Stock are entitled to one vote for each share held of
record on all matters on which the holders of Common Stock are entitled to vote
and do not have any cumulative voting rights. Subject to preferences that may be
applicable to any outstanding Preferred Stock, holders of Common Stock are
entitled to receive such dividends as may from time to time be declared by the
Board of Directors of the Company out of funds legally available therefor.
Holders of Common Stock have no preemptive, conversion, redemption or sinking
fund rights. In the event of a liquidation, dissolution or winding-up of the
Company, holders of Common Stock are entitled to share ratably in the assets of
the Company, if any, remaining after the payment of all debts and liabilities of
the Company and the liquidation preference of any outstanding Preferred Stock.
The outstanding shares of Common Stock are, and the shares of Common Stock
offered hereby when issued will be, fully paid and nonassessable. The rights,
preferences and privileges of holders of Common Stock are subject to, and may be
adversely affected by, the rights of the holders of any class or series of
Preferred Stock which the Company may issue in the future.
 
    At September 30, 1997, there were 7,649,997 shares of Common Stock
outstanding and held of record by approximately 1,070 stockholders.
 
PREFERRED STOCK
 
    The Board of Directors is authorized to provide for the issuance of
Preferred Stock in one or more classes or series and to fix the number of shares
constituting any such class or series, the voting powers, designations,
preferences and relative, participating, optional or other special rights and
qualifications, limitations or restrictions thereof, including the dividend
rights, dividend rate, terms of redemption, redemption price or prices,
conversion rights and liquidation preferences of the shares constituting any
class or series, without any further vote or action by the stockholders of the
Company. The issuance of Preferred Stock by the Board of Directors could
adversely affect the rights of holders of Common Stock. For example, the
issuance of Preferred Stock could result in a class of securities outstanding
that would have preferences over the Common Stock with respect to dividends and
in liquidation and that could (upon conversion or otherwise) enjoy all of the
rights appurtenant to Common Stock.
 
    In connection with the Rights Plan, the Board of Directors designated
200,000 shares of Series A Preferred Stock, none of which are outstanding as of
the date of this Prospectus. Each 1/1000th of a share of the Series A Preferred
Stock will be entitled to a preferential quarterly dividend equal to the greater
of (i) an amount equal to the dividend, if any, declared for a share of the
Common Stock and (ii) $.00025. In the event of liquidation, the holder of each
1/1000th of a share of Series A Preferred Stock will be entitled to a
preferential liquidation payment equal to $.01 plus an amount equal to the
amount to be distributed with respect to each share of Common Stock. Each
1/1000th of a share of Series A Preferred Stock will have one vote and will vote
together with the shares of Common Stock. See "--Stockholders' Rights Plan."
 
    The authority possessed by the Board of Directors to issue Preferred Stock
could potentially be used to discourage attempts by others to obtain control of
the Company through merger, tender offer, proxy, consent or otherwise by making
such attempts more difficult to achieve or more costly. The Board of Directors
may issue Preferred Stock without stockholder approval and with voting and
conversion rights which could adversely affect the voting power of holders of
Common Stock. There are no agreements or understandings regarding the issuance
of Preferred Stock, and the Board of Directors has no present intent to issue
Preferred Stock.
 
                                       59
<PAGE>
WARRANTS
 
    In connection with a preferred stock financing prior to the Company's
initial public offering, Oppenheimer & Co., Inc. ("Oppenheimer") acted as one of
the Company's placement agents. As consideration therefor, Oppenheimer received
the option at the closing of such financing to purchase, at a nominal price,
warrants (the "1993 Warrants") exercisable, at a per share price of $9.50, for
an aggregate of 144,344 shares of Common Stock. In February 1993, Oppenheimer
purchased the 1993 Warrants, all of which are currently exercisable and
outstanding as of the date of this Prospectus.
 
    The exercise price and the number of shares of Common Stock subject to the
1993 Warrants may, under certain circumstances, be subject to adjustment
pursuant to anti-dilution provisions contained in the 1993 Warrants. In
addition, the holders have certain registration rights with respect to shares of
Common Stock issuable upon exercise of the 1993 Warrants. The 1993 Warrants are
not transferable except to certain officers of Oppenheimer. In May 1994,
Oppenheimer transferred its 1993 Warrants to a number of its officers. See
"--Registration Rights."
 
DELAWARE LAW, CHARTER AND BY-LAW PROVISIONS
 
    Section 203 of the Delaware General Corporation Law (the "DGCL") prevents an
"interested stockholder" (defined in Section 203, generally, as a person owning
15% or more of a corporation's outstanding voting stock) from engaging in a
"business combination" (as defined in Section 203, generally, to include mergers
or consolidations between a Delaware corporation and an "interested
stockholder," transactions with an "interested stockholder" involving the assets
or stock of the corporation or its majority-owned subsidiaries and transactions
which increase an interested stockholder's percentage ownership of stock) with a
publicly-held Delaware corporation for three years following the date such
person became an interested stockholder unless (i) before such person became an
interested stockholder, the board of directors of the corporation approved the
transaction in which the interested stockholder became an interested stockholder
or approved the business combination, (ii) upon consummation of the transaction
that resulted in the interested stockholder's becoming an interested
stockholder, the interested stockholder owns at least 85% of the voting stock of
the corporation outstanding at the time the transaction commenced (excluding
voting stock held by directors who are also officers of the corporation and by
employee benefit plans that do not provide employees with the right to determine
confidentially whether shares held by the plan will be voted or tendered in a
tender or exchange offer) or (iii) following the transaction in which such
person became an interested stockholder, the business combination is approved by
the board of directors of the corporation and ratified at a meeting of
stockholders by the affirmative vote of the holders of two-thirds of the
outstanding voting stock of the corporation not owned by the interested
stockholder.
 
    The Restated Certificate provides for a Board of Directors of not less than
three members, divided into three classes of approximately equal size, with each
class to be elected for a three-year term at the annual meeting of stockholders
at which such class of directors' term expires. The exact number of directors is
fixed by the Board of Directors. Currently, there are eight seats on the Board
of Directors, one of which is vacant. Accordingly, only those directors in one
class may be changed in any one year, and it would require two years to change a
majority of the Board of Directors. Such system of electing directors may have
the effect of maintaining the continuity of management and, thus, make it more
difficult for the holders of the Company to change the majority of directors. A
director of the Company may be removed only with cause, and only with the vote
of the holders of at least 60% of the outstanding stock entitled to vote
thereon. Any amendment or repeal of any or all of the provisions of the Restated
Certificate which relate to the classified Board of Directors or the removal of
any director, would require the affirmative vote of at least 80% of the
outstanding stock entitled to vote thereon and a majority of the Board of
Directors.
 
                                       60
<PAGE>
    The Restated Certificate and By-laws of the Company (i) require the approval
of a majority of the members of the Board of Directors in order for a special
meeting of stockholders to be called, (ii) prohibit the stockholders of the
Company from taking action by written consent in lieu of a meeting, (iii) permit
amendment of the By-laws only with the approval of the holders of at least 67%
of the outstanding voting stock and (iv) require advance notice by stockholders
of an intention to nominate persons for election to the Board of Directors. Such
provisions could have the effect of discouraging attempts by others to obtain
control of the Company or delaying changes in control or management of the
Company. The provisions of the Restated Certificate and the By-laws described
above could have the effect of depriving the owners of shares in the Company of
opportunities to sell their shares at a premium over prevailing market prices by
discouraging a third party from seeking to obtain control of the Company in a
tender offer or similar transaction. The overall effect of these provisions is
to render more difficult the accomplishment of a merger or the assumption of
control by a principal stockholder.
 
    The Restated Certificate also contains provisions which eliminate the
personal liability of directors for monetary damages resulting from breaches of
their fiduciary duty other than liability for breaches of the duty of loyalty to
the Company or its stockholders, acts or omissions not in good faith or which
involve intentional misconduct or a knowing violation of law, violations under
Section 174 of the DGCL or any transaction from which the director derived an
improper personal benefit. The By-laws contain provisions requiring the
indemnification of the Company's directors and officers to the fullest extent
permitted by Section 145 of the DGCL, including circumstances in which
indemnification is otherwise discretionary. The Company believes that these
provisions are necessary to attract and retain qualified persons as directors
and officers.
 
STOCKHOLDERS' RIGHTS PLAN
 
    In November 1995, the Board of Directors adopted the Rights Plan. The Rights
Plan became effective in December 1995. Under the Rights Plan, one Right was
distributed as a dividend with respect to each share of Common Stock issued and
outstanding on December 19, 1995, and one additional Right is deemed to be
delivered with each share of Common Stock issued by the Company subsequent to
December 19, 1995. The shares of Common Stock issued by the Company in the
Offering will be deemed to be accompanied by Rights in accordance with the
provisions of the Rights Plan.
 
    Prior to the Distribution Date (as defined below), the Rights will not be
exercisable, will trade in tandem with the Common Stock and will be evidenced by
the same stock certificates that evidence the related shares of Common Stock. On
the Distribution Date, the Rights will detach from the Common Stock, will trade
separately and will be evidenced by separate Rights certificates. The
"Distribution Date" will be the earliest of (i) the close of the tenth business
day following the acquisition by any person or group of beneficial ownership of
15% or more of the outstanding Common Stock (any such person being referred to
as a "15% Stockholder" and the date of such acquisition being referred to as the
"Flip-In Date"), (ii) the close of the tenth business day following the date of
the commencement of, or the announcement by any person or group of an intention
to make, a tender offer or exchange offer, the consummation of which would cause
any person or group to become a 15% Stockholder (the date of such tenth business
day (or later day) being the "Tender/Exchange Offer Date") or (iii) such later
date as the Board of Directors may determine in its sole discretion, but not
later than the 30th day after an event described in (i) or (ii).
 
    Once the Distribution Date has occurred, the Rights will be exercisable.
Between the Distribution Date and the Flip-In Date, each Right will be
exercisable to purchase from the Company 1/1000th of a share of Series A
Preferred Stock at an exercise price of $160.00.
 
    The economic value of each 1/1000th of a share of Series A Preferred Stock
is intended to approximate the theoretical value of one share of Common Stock.
Each 1/1000th of a share of the Series A Preferred Stock will be entitled to a
preferential quarterly dividend equal to the larger of (i) an amount
 
                                       61
<PAGE>
equal to the dividend, if any, declared for a share of Common Stock and (ii)
$.00025. In the event of liquidation, the holder of each 1/1000th of a share of
Series A Preferred Stock will be entitled to a preferential liquidation payment
equal to $.01 plus an amount equal to the amount to be distributed with respect
to each share of Common Stock. Each 1/1000th of a share of Series A Preferred
Stock will have one vote and will vote together with the shares of Common Stock.
In the event of any merger, consolidation or other transaction in which shares
of Common Stock are exchanged, each 1/1000th of a share of the Series A
Preferred Stock will be entitled to receive an amount equal to the amount
received per share of Common Stock. The Rights Plan includes customary
anti-dilution provisions. The Series A Preferred Stock will be junior to any
other series of Preferred Stock that may be authorized and issued by the
Company, unless the terms of any such other series provide otherwise. The Series
A Preferred Stock is issuable only upon the exercise of Rights and will not be
redeemable. Once the shares of Series A Preferred Stock are issued, the Restated
Certificate may not be amended in a manner that would materially alter or change
the powers, preferences or special rights of the Series A Preferred Stock so as
to affect them adversely without the affirmative vote of the holders of a
majority or more of the outstanding shares of Series A Preferred Stock, voting
separately as a class. At any time that dividends on the Series A Preferred
Stock in an aggregate amount equal to dividends payable for six quarters are in
arrears, the holders of the Series A Preferred Stock will have the right to a
separate class vote to elect two directors to the Board of Directors (in
addition to the then authorized number of directors) at a special meeting or the
next annual meeting of stockholders. Upon payment of all dividend arrearages,
the terms of the two directors elected by the holders of the Series A Preferred
Stock will expire.
 
    Following the close of business on the later of the Distribution Date and
the Flip-In Date, each Right (other than Rights held by the 15% Stockholder)
will be exercisable to purchase, at the then current exercise price, shares of
Common Stock (or, in certain circumstances, cash, property or other securities
of the Company) having a market value equal to two times the exercise price of
the Right.
 
    The "Flip-Over Date" is the first date, on or after the Flip-In Date, upon
which the Company is acquired in a merger or other business combination in which
the Company is not the surviving corporation or in which the outstanding Common
Stock is changed into or exchanged for stock or assets of another person, or
upon which 50% or more of the Company's consolidated assets or earning power are
sold. On the later of the Distribution Date and the Flip-In Date, each Right
(other than Rights held by the 15% Stockholder) will become exercisable to
purchase, at the then current exercise price, shares of Common Stock of the
surviving corporation or the acquiror having a market value equal to two times
the exercise price of the Right.
 
    At any time prior to the earlier of (i) the tenth business day following the
Flip-In Date (or such later date as the Board of Directors may determine in its
sole discretion, but not later than the 30th day) or (ii) the expiration of the
Rights, the Board of Directors may, at its option, call the Rights for
redemption in whole, but not in part, at a price of $.01 per Right, subject to
certain restrictions contained in the Rights Plan. Immediately upon the calling
of the Rights for redemption, the right to exercise Rights will terminate and
the only right of the holders of Rights thereafter will be to receive the
redemption price.
 
    Prior to the Distribution Date, the Board of Directors may, from time to
time, without the approval of any holder of Rights, supplement or amend any
provision of the Rights Plan, whether or not such supplement or amendment is
adverse to any holder of Rights. Subsequent to the Distribution Date, the Rights
Plan may not be supplemented or amended in any manner that would materially and
adversely affect any holder of outstanding Rights other than a 15% Stockholder.
 
    Until a Right is exercised for Common Stock or Series A Preferred Stock (the
"New Stock"), the holder thereof, as such, will have no rights as a holder of
the New Stock, including without limitation, the right to vote or to receive
dividends. While the distribution of the Rights will not be taxable to
stockholders or to the Company, stockholders may, depending upon the
circumstances, recognize taxable income in the
 
                                       62
<PAGE>
event that the Rights become exercisable for shares of Common Stock (or other
consideration) or for Common Stock of the surviving corporation or the acquiror.
 
    The Rights will expire in 2005 (unless they have been earlier redeemed or
exchanged) unless the Distribution Date occurs prior to that time, in which case
the Rights will expire on the tenth anniversary of the Distribution Date.
 
    The Rights Plan may discourage certain types of transactions involving an
actual or potential change in control of the Company which could be beneficial
to the Company or its stockholders. See "Risk Factors--Effect of Stockholders'
Rights Plan and Certain Anti-Takeover Provisions."
 
REGISTRATION RIGHTS
 
    As of September 30, 1997, pursuant to a Third Amended and Restated
Registration Rights Agreement dated as of January 19, 1993, as amended (the
"Registration Rights Agreement"), the holders of approximately 2.1 million
shares of Common Stock and warrants to purchase 144,344 shares of Common Stock
(collectively, the "Holders") were entitled to certain registration rights with
respect to the registration under the Securities Act of the shares of Common
Stock beneficially owned by them (the "Registrable Securities"). Under the
Registration Rights Agreement, subject to certain exceptions, each Holder of
Registrable Securities may cause Synaptic to register such Holder's Registrable
Securities for public sale pursuant to a registration statement on Form S-3 an
unlimited number of times, except that the Company is not obligated to effect
more than one such registration during any six-month period. In addition, the
Holders have certain piggyback rights with respect to any registration of shares
of Common Stock by the Company for its own account, including shares to be sold
through an underwritten primary offering. Synaptic is required to bear all
expenses relating to the registration of Registrable Shares except for selling
expenses, which are required to be paid by the Holders on a pro rata basis.
Synaptic is required to indemnify the Holders and the underwriters for such
Holders, if any, under certain circumstances.
 
    Under certain conditions, registration rights may be transferred to a
transferee of Registrable Securities. Registration rights granted under the
Registration Rights Agreement may be amended or waived (either generally or in a
particular instance and either retroactively or prospectively) only with the
written consent of Synaptic and the Holders of 60% of the Registrable Securities
then outstanding.
 
    The piggyback registration rights of the Holders with respect to the
Offering have been waived.
 
TRANSFER AGENT AND REGISTRAR
 
    The transfer agent and registrar for the Common Stock is ChaseMellon
Shareholder Services.
 
                                       63
<PAGE>
                                  UNDERWRITING
 
    Subject to the terms and conditions of the Underwriting Agreement (the
"Underwriting Agreement") between the Company and Bear, Stearns & Co. Inc.,
Hambrecht & Quist LLC, and Vector Securities International, Inc., as
Representatives of the Underwriters, each of the Underwriters named below has
severally agreed to purchase from the Company, and the Company has agreed to
sell to each Underwriter, the respective number of shares of Common Stock set
forth opposite its name below:
 
<TABLE>
<CAPTION>
                                                                             NUMBER OF
                                UNDERWRITER                                    SHARES
- ---------------------------------------------------------------------------  ----------
<S>                                                                          <C>
Bear, Stearns & Co. Inc....................................................
Hambrecht & Quist LLC......................................................
Vector Securities International, Inc.......................................
                                                                             ----------
        Total..............................................................   2,500,000
                                                                             ----------
                                                                             ----------
</TABLE>
 
    The Underwriting Agreement provides that the obligations of the several
Underwriters to purchase shares of Common Stock are subject to approval of
certain legal matters by counsel and to certain other conditions precedent. If
any of the shares of Common Stock are purchased by the Underwriters pursuant to
the Underwriting Agreement, all such shares of Common Stock (other than shares
of Common Stock covered by the over-allotment option described below) must be so
purchased.
 
    The Underwriters propose to offer the shares of Common Stock directly to the
public at the public Offering price set forth on the cover page of this
Prospectus, and at such price less a concession not in excess of $      per
share of Common Stock to certain other dealers who are members of the National
Association of Securities Dealers, Inc. The Underwriters may allow, and such
dealers may reallow, concessions not in excess of $      per share to certain
other dealers. After the public offering, the Offering price and other selling
terms may be changed by the Underwriters. The Common Stock is quoted on Nasdaq.
 
    The Underwriters have been granted a 30-day over-allotment option by the
Company to purchase up to 375,000 additional shares of Common Stock, exercisable
at the public Offering price less the underwriting discount. If the Underwriters
exercise such over-allotment option, then each of the Underwriters will have a
firm commitment, subject to certain conditions, to purchase from the Company
approximately the same percentage thereof as the number of shares of Common
Stock to be purchased by it as shown in the above table bears to the 2,500,000
shares of Common Stock offered hereby. The Underwriters may exercise such option
only to cover over-allotments made in connection with the sale of the shares of
Common Stock offered hereby.
 
    The officers and directors of the Company and certain holders of the Common
Stock, who collectively hold approximately       shares of Common Stock, have
agreed that, subject to certain exceptions set forth in the Underwriting
Agreement, they will not, directly or indirectly, offer for sale, sell,
distribute, contract to sell, pledge, make a short sale, grant any option for
the sale of or otherwise dispose of, transfer or engage in any hedging or other
transaction that is designed or reasonably expected to lead to a disposition of
(or announce any such offer, sale, distribution, contract, pledge, grant of an
option to purchase or other disposition or transaction relating to) any shares
of Common Stock, any option or warrant to purchase shares of Common Stock or any
securities convertible into, exercisable for or exchangeable for shares of
Common Stock owned by them prior to the expiration of 90 days from the date of
this Prospectus without the prior written consent of Bear, Stearns & Co. Inc.,
acting alone, or the Representatives, acting jointly. After such 90-day period,
such persons will be entitled to sell, distribute or otherwise dispose any
shares of Common Stock, any option or warrant to purchase shares of Common Stock
or any securities convertible into, exercisable for or exchangeable for shares
of Common Stock that they hold subject to the provisions of applicable
securities laws.
 
                                       64
<PAGE>
    The Company has agreed that it will not, directly or indirectly, issue,
offer for sale, sell, distribute, contract to sell, pledge, make a short sale,
or grant options to purchase or otherwise dispose of, transfer or engage in any
hedging or other transaction that is designed or reasonably expected to lead to
a disposition of (or announce any such issuance, offer, sale, distribution,
contract, pledge, grant of an option to purchase or other disposition or
transaction relating to) any shares of its Common Stock, any option or warrant
to purchase shares of Common Stock or any securities convertible into,
exercisable for or exchangeable for shares of Common Stock, except with respect
to options or other rights outstanding on the date of this Prospectus or
pursuant to the Company's stock option plans or in connection with transactions
involving the Company and other entities or individuals such as joint ventures,
acquisitions, mergers or similar transactions, for a period of 90 days after the
date of this Prospectus without the prior written consent of Bear, Stearns & Co.
Inc., acting alone, or the Representatives, acting jointly.
 
    The Underwriting Agreement provides that the Company will indemnify the
Underwriters and controlling persons, if any, against certain liabilities,
including liabilities under the Securities Act, or will contribute to payments
which the Underwriters or any such controlling persons may be required to make
in respect thereof.
 
    In order to facilitate the Offering, the Underwriters may engage in
transactions that stabilize, maintain or otherwise affect the price of the
Common Stock during and after the Offering. Specifically, the Underwriters may
over-allot or otherwise create a short position in the Common Stock for their
own account by selling more shares of Common Stock than have been sold to them
by the Company. The Underwriters may elect to cover any such short position by
purchasing shares of Common Stock in the open market or by exercising the
over-allotment option granted to the Underwriters. In addition, the Underwriters
may stabilize or maintain the price of the Common Stock by bidding for or
purchasing shares of Common Stock in the open market and may impose penalty
bids, under which selling concessions allowed to syndicate members or other
broker-dealers participating in the Offering are reclaimed if shares of Common
Stock previously distributed in the Offering are repurchased in connection with
stabilization transactions or otherwise. The effect of these transactions may be
to stabilize or maintain the market price at a level above that which might
otherwise prevail in the open market. The imposition of a penalty bid may also
affect the price of the Common Stock to the extent that it discourages resales
thereof. No representation is made as to the magnitude or effect of any such
stabilization or other transactions. Such transactions may be effected on Nasdaq
or otherwise and, if commenced, may be discontinued at any time.
 
    Certain persons participating in the Offering may engage in passive market
making transactions in the Common Stock on Nasdaq in accordance with Rule 103 of
Regulation M under the Exchange Act. Rule 103 permits, upon the satisfaction of
certain conditions, underwriting and selling group members participating in a
distribution that are also registered Nasdaq market makers in the security being
distributed (or a related security) to engage in limited passive market making
transactions during the period when Regulation M would otherwise prohibit such
activity. In general, a passive market maker may not bid for or purchase a
security at a price that exceeds the highest independent bid for those
securities by a person that is not participating in the distribution and must
identify its passive market making bids on the Nasdaq electronic inter-dealer
reporting system. In addition, the net daily purchases made by a passive market
maker generally may not exceed 30% of such market maker's average daily trading
volume in the security for the two full consecutive calendar months (or any 60
consecutive days ending within 10 days) immediately preceding the date of filing
of the Registration Statement of which this Prospectus forms a part.
 
    Vector Securities International, Inc. is serving as one of the Company's
managing underwriters in the Offering. Vector Fund Management, L.P. ("Vector
Management") is the asset management affiliate of Vector Securities. Sandra
Panem, a director of the Company, is the President of Vector Management and may
in the future receive some benefit in respect of the customary underwriting fees
paid by the Company to Vector Securities in connection with the Offering.
 
                                       65
<PAGE>
    In the ordinary course of their respective businesses, certain of the
Underwriters or their affiliates have engaged, and in the future may engage, in
investment banking transactions with the Company.
 
                                 LEGAL MATTERS
 
    The validity of the Common Stock offered hereby will be passed upon for the
Company by Baker & Botts, L.L.P., New York, New York. Certain legal matters will
be passed upon for the Company by Lisa L. Reiter, General Counsel for the
Company. Certain legal issues relating to patent matters will be passed upon for
the Company by Cooper & Dunham LLP, New York, New York. As of the date of this
Prospectus, a partner of Cooper & Dunham LLP owns shares of the Company's Common
Stock. Certain legal matters relating to the Offering will be passed upon for
the Underwriters by Simpson Thacher & Bartlett (a partnership which includes
professional corporations), New York, New York.
 
                                    EXPERTS
 
    The financial statements of Synaptic Pharmaceutical Corporation at December
31, 1995 and 1996, and for each of the three years in the period ended December
31, 1996, appearing in this Prospectus and Registration Statement, have been
audited by Ernst & Young LLP, independent auditors, as set forth in their report
thereon, appearing elsewhere herein, and are included in reliance upon such
report given upon the authority of such firm as experts in accounting and
auditing.
 
                             AVAILABLE INFORMATION
 
    The Company has filed with the Commission a Registration Statement on Form
S-3 (together with all amendments and exhibits, the "Registration Statement")
under the Securities Act with respect to the Common Stock offered hereby. This
Prospectus does not contain all of the information set forth in the Registration
Statement, certain parts of which are omitted in accordance with the rules and
regulations of the Commission. For further information with respect to the
Company and the Common Stock offered hereby, reference is made to the
Registration Statement. Statements contained in this Prospectus regarding the
contents of any contract or other document are not necessarily complete, and in
each instance reference is made to the copy of such contract or document filed
as an exhibit to the Registration Statement or the documents incorporated into
the Prospectus by reference, each such statement being qualified in all respects
by such reference.
 
    The Company is subject to the reporting requirements of the Exchange Act and
in accordance therewith files annual and quarterly reports, proxy statements and
other information with the Commission. Such reports, proxy statements and other
information may be inspected at the Commission's Public Reference Section, Room
1024, 450 Fifth Street, N.W., Washington, D.C. 20549, as well as at the
Commission's regional offices at 7 World Trade Center, 13th Floor, New York, New
York 10048; and Northwest Atrium Center, 500 West Madison Street, Room 1400,
Chicago, Illinois 60661-2511. Copies of such materials can also be obtained at
prescribed rates from the Public Reference Section of the Commission at 450
Fifth Street, N.W., Washington, D.C. 20549. In addition, the Commission
maintains a World Wide Web site on the Internet at http://www.sec.gov that
contains reports, proxy and information statements and other information
regarding registrants that file electronically with the Commission. The Common
Stock is traded on the National Market tier of The Nasdaq Stock Market, and
copies of such reports, proxy statements and other information can also be
inspected at the offices of the National Association of Securities Dealers,
Inc., 1735 K Street, N.W., Washington, D.C. 20006.
 
                     INFORMATION INCORPORATED BY REFERENCE
 
    The following documents filed by the Company with the Commission are hereby
incorporated by reference in this Prospectus: (1) the Annual Report of the
Company on Form 10-K for the fiscal year ended December 31, 1996; (2) the
Quarterly Report of the Company on Form 10-Q for the quarter ended
 
                                       66
<PAGE>
March 31, 1997; (3) the Quarterly Report of the Company on Form 10-Q for the
quarter ended June 30, 1997; and (4) the description of the Common Stock
contained in the Company's Registration Statement on Form 8-A filed on December
7, 1995.
 
    All reports and other documents subsequently filed by the Company pursuant
to Sections 13(a), 13(c), 14 or 15(d) of the Exchange Act after the date of this
Prospectus and prior to the termination of the Offering shall be deemed to be
incorporated by reference herein and to be a part hereof from the date of filing
of such reports and documents. Any statement contained in any document
incorporated or deemed to be incorporated by reference herein shall be deemed to
be modified or superseded for purposes of this Prospectus to the extent that a
statement contained herein or in any other subsequently filed document which
also is or is deemed to be incorporated by reference herein modifies or
supersedes such statement. Any statement so modified or superseded shall not be
deemed, except as so modified or superseded, to constitute a part of this
Prospectus.
 
    The Company will provide without charge to each person to whom this
Prospectus is delivered, upon written or oral request of such person, a copy of
any or all of the foregoing documents incorporated by reference herein (other
than exhibits to such documents, unless such exhibits are specifically
incorporated by reference into any such document). Requests for such documents
should be submitted to the Secretary of the Company at the Company's principal
executive offices at 215 College Road, Paramus, New Jersey 07652-1431, telephone
number (201) 261-1331.
 
                            ------------------------
 
    Imitrex-Registered Trademark-, Wellbutrin-Registered Trademark-,
Zantac-Registered Trademark- and Zyban-Registered Trademark- are registered
trademarks of Glaxo Wellcome Inc. BuSpar-Registered Trademark- is the registered
trademark of Bristol Myers Squibb Co. Tagamet-Registered Trademark-,
Benzedrine-Registered Trademark-, Dexedrine-Registered Trademark- and
Paxil-Registered Trademark- are registered trademarks of SmithKline Beecham
Pharmaceuticals. Hytrin-Registered Trademark- and Depakote-Registered Trademark-
are registered trademarks of Abbott Laboratories. Valium-Registered Trademark-
is the registered trademark of Roche Laboratories, Inc.
Prozac-Registered Trademark- is the registered trademark of Lilly and Dista
Products. Proscar-Registered Trademark- and Blocadren-Registered Trademark- are
registered trademarks of Merck. Sansert-Registered Trademark- is the registered
trademark of Novartis. Inderal-Registered Trademark- and
Redux-Registered Trademark- are registered trademarks of Wyeth Ayerst
Laboratories. Pondimin-Registered Trademark- is the registered trademark of A.H.
Robins Co. Zoloft-Registered Trademark- and Cardura-Registered Trademark- are
registered trademarks of Pfizer Inc. Flomax-Registered Trademark- is the
registered trademark of Boehringer Ingelheim Pharmaceuticals Inc.
Claritin-Registered Trademark- is the registered trademark of Schering
Corporation. Propulsid-Registered Trademark- is the registered trademark of
Janssen Pharmaceutica. All other brand names or trademarks appearing in this
Prospectus are the property of their respective owners.
 
                            ------------------------
 
                                       67
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                         INDEX TO FINANCIAL STATEMENTS
 
<TABLE>
<CAPTION>
                                                                                                                PAGE
                                                                                                                -----
<S>                                                                                                          <C>
Report of Independent Auditors.............................................................................         F-2
Balance Sheets at December 31, 1995 and 1996 and unaudited at June 30, 1997................................         F-3
Statements of Operations for the Years Ended December 31, 1994, 1995 and 1996 and unaudited for the Six
  Months Ended June 30, 1996 and 1997......................................................................         F-4
Statements of Stockholders' Equity (Deficiency) for the Years Ended December 31, 1994, 1995 and 1996 and
  unaudited for the Six Months Ended June 30, 1997.........................................................         F-5
Statements of Cash Flows for the Years Ended December 31, 1994, 1995 and 1996 and unaudited for the Six
  Months Ended June 30, 1996 and 1997......................................................................         F-7
Notes to Financial Statements..............................................................................         F-8
</TABLE>
 
                                      F-1
<PAGE>
                         REPORT OF INDEPENDENT AUDITORS
 
The Board of Directors and Shareholders
 
SYNAPTIC PHARMACEUTICAL CORPORATION
 
    We have audited the accompanying balance sheets of Synaptic Pharmaceutical
Corporation as of December 31, 1995 and 1996, and the related statements of
operations, stockholders' equity (deficiency) and cash flows for each of the
three years in the period ended December 31, 1996. These financial statements
are the responsibility of the Company's management. Our responsibility is to
express an opinion on these financial statements based on our audits.
 
    We conducted our audits in accordance with generally accepted auditing
standards. Those standards require that we plan and perform the audit to obtain
reasonable assurance about whether the financial statements are free of material
misstatement. An audit includes examining, on a test basis, evidence supporting
the amounts and disclosures in the financial statements. An audit also includes
assessing the accounting principles used and significant estimates made by
management, as well as evaluating the overall financial statement presentation.
We believe that our audits provide a reasonable basis for our opinion.
 
    In our opinion, the financial statements referred to above present fairly,
in all material respects, the financial position of Synaptic Pharmaceutical
Corporation at December 31, 1995 and 1996 and the results of its operations and
its cash flows for each of the three years in the period ended December 31, 1996
in conformity with generally accepted accounting principles.
 
                                                               ERNST & YOUNG LLP
 
Hackensack, New Jersey
 
February 18, 1997
 
                                      F-2
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                                 BALANCE SHEETS
<TABLE>
<CAPTION>
                                                                              DECEMBER 31,
                                                                      ----------------------------
<S>                                                                   <C>            <C>            <C>
                                                                          1995           1996       JUNE 30, 1997
                                                                      -------------  -------------  -------------
 
<CAPTION>
                                                                                                     (UNAUDITED)
<S>                                                                   <C>            <C>            <C>
ASSETS
Current assets:
  Cash and cash equivalents.........................................  $  27,680,969  $   4,588,731  $   7,332,148
  Restricted cash...................................................             --             --        712,000
  Marketable securities--current maturities.........................      7,932,322     21,418,869     20,218,108
  Revenue receivable under license agreement........................        129,208        191,666        191,666
  Restricted securities.............................................        770,000        712,000             --
  Other current assets..............................................        351,296        457,915        587,961
                                                                      -------------  -------------  -------------
      Total current assets..........................................     36,863,795     27,369,181     29,041,883
Property and equipment, net.........................................      2,232,418      2,664,129      3,909,747
Marketable securities...............................................        404,375      8,676,682      3,548,235
Patent and patent application costs, net of accumulated amortization
  (1995--$443,986; 1996--$729,798;
  1997--$897,967)...................................................      1,412,155      1,644,602      1,476,433
                                                                      -------------  -------------  -------------
                                                                      $  40,912,743  $  40,354,594  $  37,976,298
                                                                      -------------  -------------  -------------
                                                                      -------------  -------------  -------------
LIABILITIES AND STOCKHOLDERS' EQUITY
Current liabilities:
  Current portion of capital lease obligations......................  $     152,282  $     106,472  $      45,177
  Accounts payable..................................................        196,750        638,751        385,964
  Accrued liabilities...............................................        660,481        189,010        300,675
  Accrued compensation..............................................        306,851        380,000        204,000
  Unearned revenue under research agreements........................        820,720             --             --
                                                                      -------------  -------------  -------------
      Total current liabilities.....................................      2,137,084      1,314,233        935,816
Capital lease obligations, less current portion.....................        106,472             --             --
Commitments and contingencies
Stockholders' equity:
  Preferred Stock, $.01 par value; authorized--1,000,000 shares.....             --             --             --
  Common Stock, $.01 par value; authorized--25,000,000 shares;
    issued--7,326,368 shares in 1995, 7,633,543 shares in 1996 and
    7,646,579 shares in 1997; outstanding--7,325,493 shares in 1995,
    7,633,543 shares in 1996 and 7,646,579 shares in 1997...........         73,264         76,335         76,466
Additional paid-in capital..........................................     59,952,735     63,231,188     63,247,098
Net unrealized gains (losses) on securities.........................        196,384         (1,162)         5,611
Deferred compensation...............................................       (208,952)      (296,480)      (224,248)
Note receivable from stockholder....................................         (6,134)            --             --
Accumulated deficit.................................................    (21,336,465)   (23,969,520)   (26,064,445)
                                                                      -------------  -------------  -------------
                                                                         38,670,832     39,040,361     37,040,482
Less: Treasury stock, at cost.......................................         (1,645)            --             --
      Total stockholders' equity....................................     38,669,187     39,040,361     37,040,482
                                                                      -------------  -------------  -------------
                                                                      $  40,912,743  $  40,354,594  $  37,976,298
                                                                      -------------  -------------  -------------
                                                                      -------------  -------------  -------------
</TABLE>
 
                       See notes to financial statements.
 
                                      F-3
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                            STATEMENTS OF OPERATIONS
<TABLE>
<CAPTION>
                                                 YEARS ENDED DECEMBER 31,             SIX MONTHS ENDED JUNE 30,
                                        -------------------------------------------  ----------------------------
<S>                                     <C>            <C>            <C>            <C>            <C>
                                            1994           1995           1996           1996           1997
                                        -------------  -------------  -------------  -------------  -------------
 
<CAPTION>
                                                                                             (UNAUDITED)
<S>                                     <C>            <C>            <C>            <C>            <C>
Revenues:
  Contract revenue....................  $   4,763,124  $   7,670,491  $   6,942,928  $   3,422,170  $   5,309,687
  License revenue.....................             --             --      2,000,000             --             --
  Grant revenue.......................        280,000        307,000        537,760        140,000        242,240
                                        -------------  -------------  -------------  -------------  -------------
    Total revenues....................      5,043,124      7,977,491      9,480,688      3,562,170      5,551,927
Expenses:
  Research and development............      9,308,917      9,863,769     11,336,756      5,484,292      6,690,497
  General and administrative..........      1,912,081      2,214,897      2,982,449      1,363,852      1,922,133
                                        -------------  -------------  -------------  -------------  -------------
    Total expenses....................     11,220,998     12,078,666     14,319,205      6,848,144      8,612,630
                                        -------------  -------------  -------------  -------------  -------------
Loss from operations..................     (6,177,874)    (4,101,175)    (4,838,517)    (3,285,974)    (3,060,703)
Other income, net:
  Interest income.....................        692,985        748,395      2,012,847        926,165        969,827
  Interest expense....................        (45,223)       (32,975)       (19,545)       (11,702)        (4,049)
  Gain on sale of securities..........          3,391         18,404        212,160        212,160             --
                                        -------------  -------------  -------------  -------------  -------------
Other income, net.....................        651,153        733,824      2,205,462      1,126,623        965,778
                                        -------------  -------------  -------------  -------------  -------------
Net loss..............................  $  (5,526,721) $  (3,367,351) $  (2,633,055) $  (2,159,351) $  (2,094,925)
                                        -------------  -------------  -------------  -------------  -------------
                                        -------------  -------------  -------------  -------------  -------------
Net loss per share....................                 $       (4.76) $       (0.35) $       (0.29) $       (0.27)
                                                       -------------  -------------  -------------  -------------
                                                       -------------  -------------  -------------  -------------
Shares used in computation of net loss
  per share...........................                       707,094      7,577,610      7,534,736      7,640,454
                                                       -------------  -------------  -------------  -------------
                                                       -------------  -------------  -------------  -------------
</TABLE>
 
                       See notes to financial statements.
 
                                      F-4
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                STATEMENTS OF STOCKHOLDERS' EQUITY (DEFICIENCY)
<TABLE>
<CAPTION>
                                                                              NET                          NOTES
                                        COMMON STOCK        ADDITIONAL     UNREALIZED                    RECEIVABLE
                                   -----------------------    PAID-IN    GAINS (LOSSES)    DEFERRED         FROM       ACCUMULATED
                                     SHARES      AMOUNT       CAPITAL    ON SECURITIES   COMPENSATION   STOCKHOLDERS     DEFICIT
                                   ----------  -----------  -----------  --------------  -------------  ------------  --------------
<S>                                <C>         <C>          <C>          <C>             <C>            <C>           <C>
Balance at January 1, 1994.......     329,181   $ 3,292   $ 624,864    $ 55,370     $(151,448)   $(16,993)  $(12,442,393)
Purchase of 848 shares of
  Treasury Stock at cost.........          --          --            --            --              --            --               --
Payments received on notes
  receivable from stockholders...          --          --            --            --              --         5,207               --
Deferred Compensation related to
  Stock Incentive Plan...........          --          --        14,955            --         (14,955)           --               --
Forfeiture of Deferred
  Compensation related to Stock
  Incentive Plan.................          --          --          (607)           --             607            --               --
Amortization of Deferred
  Compensation...................          --          --            --            --          60,554            --               --
Issuance of 3,293 shares of
  Treasury Stock.................          --          --         3,725            --              --            --               --
Issuance of 11,012 shares of
  common stock...................      11,012         110        19,272            --              --            --               --
Adjustment to reflect net
  unrealized holding loss on
  securities.....................          --          --            --      (226,110)             --            --               --
Net loss for the year ended
  December 31, 1994..............          --          --            --            --              --            --     (5,526,721)
                                   ----------  -----------  -----------  --------------  -------------  ------------  --------------
Balance at December 31, 1994.....     340,193       3,402       662,209      (170,740)       (105,242)      (11,786)   (17,969,114)
Purchase of 1,893 shares of
  Treasury Stock at cost.........          --          --            --            --              --            --               --
Payments received on notes
  receivable from stockholders...          --          --            --            --              --         5,652               --
Deferred Compensation related to
  Stock Incentive Plan...........          --          --       190,674            --        (190,674)           --               --
Forfeiture of Deferred
  Compensation related to Stock
  Incentive Plan.................          --          --        (1,075)           --           1,075            --               --
Amortization of Deferred
  Compensation...................          --          --            --            --          85,889            --               --
Issuance of 1,646 shares of
  Treasury Stock.................          --          --           736            --              --            --               --
Issuance of 57,769 shares of
  common stock to employees and
  consultants....................      57,769         578       257,978            --              --            --               --
Issuance of 2,000,000 shares of
  common stock in initial public
  offering.......................   2,000,000      20,000    22,692,401            --              --            --               --
Conversion of preferred stock....   4,928,382      49,284    36,149,812            --              --            --               --
Adjustment to reflect net
  unrealized holding gain on
  securities.....................          --          --            --       367,124              --            --               --
Net loss for the year ended
  December 31, 1995..............          --          --            --            --              --            --     (3,367,351)
Fractional shares issued in
  reverse stock split............          24          --            --            --              --            --               --
                                   ----------  -----------  -----------  --------------  -------------  ------------  --------------
Balance at December 31, 1995.....   7,326,368      73,264    59,952,735       196,384        (208,952)       (6,134)   (21,336,465)
 
<CAPTION>
                                                    TOTAL
                                                STOCKHOLDERS'
                                    TREASURY       EQUITY
                                      STOCK     (DEFICIENCY)
                                   -----------  -------------
<S>                                <C>          <C>
Balance at January 1, 1994.......   $  (1,945)  $ (11,929,253)
Purchase of 848 shares of
  Treasury Stock at cost.........        (705)           (705)
Payments received on notes
  receivable from stockholders...          --           5,207
Deferred Compensation related to
  Stock Incentive Plan...........          --              --
Forfeiture of Deferred
  Compensation related to Stock
  Incentive Plan.................          --              --
Amortization of Deferred
  Compensation...................          --          60,554
Issuance of 3,293 shares of
  Treasury Stock.................       2,070           5,795
Issuance of 11,012 shares of
  common stock...................          --          19,382
Adjustment to reflect net
  unrealized holding loss on
  securities.....................          --        (226,110)
Net loss for the year ended
  December 31, 1994..............          --      (5,526,721)
                                   -----------  -------------
Balance at December 31, 1994.....        (580)    (17,591,851)
Purchase of 1,893 shares of
  Treasury Stock at cost.........      (3,449)         (3,449)
Payments received on notes
  receivable from stockholders...          --           5,652
Deferred Compensation related to
  Stock Incentive Plan...........          --              --
Forfeiture of Deferred
  Compensation related to Stock
  Incentive Plan.................          --              --
Amortization of Deferred
  Compensation...................          --          85,889
Issuance of 1,646 shares of
  Treasury Stock.................       2,384           3,120
Issuance of 57,769 shares of
  common stock to employees and
  consultants....................          --         258,556
Issuance of 2,000,000 shares of
  common stock in initial public
  offering.......................          --      22,712,401
Conversion of preferred stock....          --      36,199,096
Adjustment to reflect net
  unrealized holding gain on
  securities.....................          --         367,124
Net loss for the year ended
  December 31, 1995..............          --      (3,367,351)
Fractional shares issued in
  reverse stock split............          --              --
                                   -----------  -------------
Balance at December 31, 1995.....      (1,645)     38,669,187
</TABLE>
 
                       See notes to financial statements.
 
                                      F-5
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
          STATEMENTS OF STOCKHOLDERS' EQUITY (DEFICIENCY) (CONTINUED)
<TABLE>
<CAPTION>
                                                                             NET                           NOTES
                                       COMMON STOCK        ADDITIONAL     UNREALIZED                    RECEIVABLE
                                  ----------------------    PAID-IN     GAINS (LOSSES)    DEFERRED         FROM        ACCUMULATED
                                    SHARES      AMOUNT      CAPITAL     ON SECURITIES   COMPENSATION   STOCKHOLDERS      DEFICIT
                                  -----------  ---------  ------------  --------------  -------------  -------------  -------------
<S>                               <C>          <C>        <C>           <C>             <C>            <C>            <C>
Balance at December 31, 1995....    7,326,368  $  73,264  $ 59,952,735   $    196,384    $  (208,952)    $  (6,134)   $ (21,336,465)
Purchase of 1,190 shares of
  Treasury Stock at cost........           --         --            --             --             --            --               --
Payments received on notes
  receivable from stockholders..           --         --            --             --             --         6,134               --
Deferred Compensation related to
  Stock Incentive Plan..........           --         --       388,100             --       (388,100)           --               --
Forfeiture of Deferred
  Compensation related to Stock
  Incentive Plan................           --         --      (121,200)            --        121,200            --               --
Amortization of Deferred
  Compensation..................           --         --            --             --        179,372            --               --
Issuance of 48,126 shares of
  common stock pursuant to
  exercise of stock options.....       46,061        460        80,952             --             --            --               --
Issuance of 48,114 shares of
  common stock pursuant to
  exercise of stock warrants....       48,114        481       456,606             --             --            --               --
Issuance of 213,000 shares of
  common stock pursuant to
  overallotment option..........      213,000      2,130     2,473,995             --             --            --               --
Adjustment to reflect net
  unrealized holding loss on
  securities....................           --         --            --       (197,546)            --            --               --
Net loss for the year ended
  December 31, 1996.............           --         --            --             --             --            --       (2,633,055)
                                  -----------  ---------  ------------  --------------  -------------  -------------  -------------
Balance at December 31, 1996....    7,633,543     76,335    63,231,188         (1,162)      (296,480)           --      (23,969,520)
Purchase of 313 shares of
  Treasury Stock at cost
  (unaudited)...................           --         --            --             --             --            --               --
Forfeiture of Deferred
  Compensation related to Stock
  Incentive Plan (unaudited)....           --         --        (6,954)            --          6,954            --               --
Amortization of Deferred
  Compensation (unaudited)......           --         --            --             --         65,278            --               --
Issuance of 13,349 shares of
  common stock pursuant to
  exercise of stock options
  (unaudited)...................       13,036        131        22,864             --             --            --               --
Adjustment to reflect net
  unrealized holding gain on
  securities (unaudited)........           --         --            --          6,773             --            --               --
Net loss for the six months
  ended June 30, 1997
  (unaudited)...................           --         --            --             --             --            --       (2,094,925)
                                  -----------  ---------  ------------  --------------  -------------  -------------  -------------
Balance at June 30, 1997
  (unaudited)...................    7,646,579  $  76,466  $ 63,247,098   $      5,611    $  (224,248)    $      --    $ (26,064,445)
                                  -----------  ---------  ------------  --------------  -------------  -------------  -------------
                                  -----------  ---------  ------------  --------------  -------------  -------------  -------------
 
<CAPTION>
                                                  TOTAL
                                               STOCKHOLDERS'
                                   TREASURY       EQUITY
                                     STOCK     (DEFICIENCY)
                                  -----------  ------------
<S>                               <C>          <C>
Balance at December 31, 1995....   $  (1,645)   $38,669,187
Purchase of 1,190 shares of
  Treasury Stock at cost........      (2,275)       (2,275)
Payments received on notes
  receivable from stockholders..          --         6,134
Deferred Compensation related to
  Stock Incentive Plan..........          --            --
Forfeiture of Deferred
  Compensation related to Stock
  Incentive Plan................          --            --
Amortization of Deferred
  Compensation..................          --       179,372
Issuance of 48,126 shares of
  common stock pursuant to
  exercise of stock options.....       3,920        85,332
Issuance of 48,114 shares of
  common stock pursuant to
  exercise of stock warrants....          --       457,087
Issuance of 213,000 shares of
  common stock pursuant to
  overallotment option..........          --     2,476,125
Adjustment to reflect net
  unrealized holding loss on
  securities....................          --      (197,546)
Net loss for the year ended
  December 31, 1996.............          --    (2,633,055)
                                  -----------  ------------
Balance at December 31, 1996....          --    39,040,361
Purchase of 313 shares of
  Treasury Stock at cost
  (unaudited)...................        (626)         (626)
Forfeiture of Deferred
  Compensation related to Stock
  Incentive Plan (unaudited)....          --            --
Amortization of Deferred
  Compensation (unaudited)......          --        65,278
Issuance of 13,349 shares of
  common stock pursuant to
  exercise of stock options
  (unaudited)...................         626        23,621
Adjustment to reflect net
  unrealized holding gain on
  securities (unaudited)........          --         6,773
Net loss for the six months
  ended June 30, 1997
  (unaudited)...................          --    (2,094,925)
                                  -----------  ------------
Balance at June 30, 1997
  (unaudited)...................   $      --    $37,040,482
                                  -----------  ------------
                                  -----------  ------------
</TABLE>
 
                       See notes to financial statements.
 
                                      F-6
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                            STATEMENTS OF CASH FLOWS
<TABLE>
<CAPTION>
                                                                                              SIX MONTHS
                                                        YEARS ENDED DECEMBER 31,            ENDED JUNE 30,
                                                   -----------------------------------  -----------------------
<S>                                                <C>         <C>         <C>          <C>          <C>
                                                      1994        1995        1996         1996         1997
                                                   ----------  ----------  -----------  -----------  ----------
 
<CAPTION>
                                                                                              (UNAUDITED)
<S>                                                <C>         <C>         <C>          <C>          <C>
Operating activities:
Net loss.........................................  $(5,526,721) $(3,367,351) $(2,633,055) $(2,159,351) $(2,094,925)
Adjustments to reconcile net loss to net cash
  provided by (used in) operating activities:
  Depreciation and amortization..................     674,486     791,855      959,835      481,248     583,538
  Amortization of premiums/(discounts) on
    securities...................................      16,440      42,465     (157,759)       8,964     (70,925)
  Amortization of deferred compensation and
    other........................................      64,735      86,253      179,372       97,648      65,278
  Gain on sale of securities.....................      (3,391)    (18,404)    (212,160)    (212,160)         --
  Changes in operating assets and liabilities:
    (Increase) decrease in other assets..........    (453,850)    355,928     (106,619)    (367,433)   (130,046)
    Increase (decrease) in accounts payable,
      accrued liabilities and accrued
      compensation...............................      60,619     131,027       43,679     (361,486)   (317,122)
    (Increase) decrease in license agreement
      revenue receivable.........................   1,695,093   1,903,876      (62,458)     129,208          --
    (Decrease) increase in deferred revenue......  (1,309,075)    820,720     (820,720)     328,062          --
                                                   ----------  ----------  -----------  -----------  ----------
  Net cash (used in) provided by operating
    activities...................................  (4,781,664)    746,369   (2,809,885)  (2,055,300) (1,964,202)
Investing activities:
  Proceeds from sale or maturity of
    investments..................................  11,221,728   6,318,507   10,710,000    6,710,000  10,350,000
  Purchases of investments.......................  (13,431,922) (3,669,005) (32,238,481) (30,238,480) (3,943,094)
  Purchases of property and equipment............    (416,792)   (529,035)  (1,105,734)    (440,195) (1,660,987)
  Increase in patent and patent application
    costs........................................    (596,750)   (601,741)    (518,259)    (324,193)         --
  Issuance of loans to employee/stockholder......    (400,000)         --           --           --          --
  Principal payments made by employee
    stockholders.................................     404,182         365           --           --          --
                                                   ----------  ----------  -----------  -----------  ----------
Net cash (used in) provided by investing
  activities.....................................  (3,219,554)  1,519,091  (23,152,474) (24,292,868)  4,745,919
Financing activities:
  Issuance of common stock, net of repurchases...      24,472  22,970,628    3,016,269    2,968,103      22,995
  Issuance of Series 4 Convertible Preferred
    Stock........................................   7,293,357      --          --           --           --
  Payments on capital lease......................    (112,658)   (124,673)    (152,282)     (67,238)    (61,295)
  Payments on notes receivable from
    stockholders.................................       5,207       5,652        6,134        6,134      --
                                                   ----------  ----------  -----------  -----------  ----------
Net cash provided by (used in) financing
  activities.....................................   7,210,378  22,851,607    2,870,121    2,906,999     (38,300)
                                                   ----------  ----------  -----------  -----------  ----------
Net (decrease) increase in cash and cash
  equivalents....................................    (790,840) 25,117,067  (23,092,238) (23,441,169)  2,743,417
Cash and cash equivalents at beginning of
  period.........................................   3,354,742   2,563,902   27,680,969   27,680,969   4,588,731
                                                   ----------  ----------  -----------  -----------  ----------
Cash and cash equivalents at end of period.......  $2,563,902  27,680,969  $ 4,588,731  $ 4,239,800  $7,332,148
                                                   ----------  ----------  -----------  -----------  ----------
                                                   ----------  ----------  -----------  -----------  ----------
Supplemental cash flow disclosure:
Cash paid for interest...........................  $   45,233      32,975  $    19,545  $    11,702  $    4,049
                                                   ----------  ----------  -----------  -----------  ----------
                                                   ----------  ----------  -----------  -----------  ----------
</TABLE>
 
                       See notes to financial statements.
 
                                      F-7
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                         NOTES TO FINANCIAL STATEMENTS
 
            (INFORMATION AS OF JUNE 30, 1997 AND FOR THE SIX MONTHS
 
                   ENDED JUNE 30, 1996 AND 1997 IS UNAUDITED)
 
NOTE 1--SUMMARY OF SIGNIFICANT ACCOUNTING POLICIES
 
    ORGANIZATION.  Synaptic Pharmaceutical Corporation (the "Company") is
engaged in the development of a broad platform of enabling technology which it
calls "human receptor-targeted drug design technology". The Company is utilizing
this technology both to discover and clone the genes that code for human
receptor subtypes associated with specific disorders and to design compounds
that can potentially be developed as drugs for treating these disorders. The
Company makes available this technology to its pharmaceutical partners through
licensing and research agreements from which the Company derives the principal
portion of its revenue.
 
    UNAUDITED INTERIM FINANCIAL INFORMATION.  The financial statements at June
30, 1997 and for the six months ended June 30, 1996 and 1997 are unaudited but
include all adjustments (consisting only of normal recurring adjustments) which
the Company considers necessary for a fair presentation of the financial
position at such dates and the operating results and cash flows for those
periods. Results for interim periods are not necessarily indicative of results
for the entire year.
 
    NET LOSS PER SHARE.  Except as noted below, net loss per share is computed
using the weighted average number of shares of common stock outstanding. Common
equivalent shares from stock options and warrants are excluded from the
computation as their effect is anti-dilutive, except that, pursuant to the
Securities and Exchange Commission Staff Accounting Bulletins, common and common
equivalent shares issued at prices below the offering price during the
twelve-month period prior to the Company's initial public offering in December
1995 have been included in the calculation as if they were outstanding for
periods prior to the initial public offering (using the treasury stock method
and the initial public offering price). Additionally, the effect of common
shares issued upon conversion of the convertible redeemable preferred stock on
December 19, 1995 is included in net loss per share on a weighted average basis.
Historical net loss per share information prior to 1995 is not considered
meaningful due to the significant changes in the Company's capital structure
which occurred upon the closing of the initial public offering. Accordingly,
such per share information is not presented.
 
    SUPPLEMENTARY NET LOSS PER SHARE.  Except as noted below, 1995 supplementary
net loss per share of $0.62 is computed using the weighted average number of
shares of common stock and convertible redeemable preferred stock amounting to
5,430,127. Common equivalent shares from stock options and warrants are excluded
from the computation as their effect is anti-dilutive, except that, pursuant to
the Securities and Exchange Commission Staff Accounting Bulletins, common and
common equivalent shares issued at prices below the offering price during the
twelve-month period prior to the initial public offering have been included in
the calculation as if they were outstanding for all periods presented prior to
the initial public offering (using the treasury stock method and the initial
public offering price). Additionally, the effect of common shares issuable upon
conversion of convertible redeemable preferred stock is included in
supplementary net loss per share as outstanding for all of 1995.
 
    REVENUE RECOGNITION.  Research funding revenue is recognized ratably over
the period of the contract to which it relates. Payments received in advance
under such contracts is recorded as deferred revenue until the research is
performed. Research milestone payment revenue is recognized at the time the
related research milestone is achieved. License revenue represents
non-refundable payments for licenses to the Company's technology and drug
discovery systems. Non-refundable payments for licenses are recognized
 
                                      F-8
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                   NOTES TO FINANCIAL STATEMENTS (CONTINUED)
 
            (INFORMATION AS OF JUNE 30, 1997 AND FOR THE SIX MONTHS
 
                   ENDED JUNE 30, 1996 AND 1997 IS UNAUDITED)
 
NOTE 1--SUMMARY OF SIGNIFICANT ACCOUNTING POLICIES (CONTINUED)
at such time as they are received or, if earlier, become guaranteed. Government
grant receipts are recorded as revenue in the period in which the related
research is performed.
 
    CASH EQUIVALENTS.  Cash equivalents consist of highly liquid investments
with a maturity of three months or less when purchased.
 
    AVAILABLE-FOR-SALE SECURITIES.  Available-for-sale securities are carried at
fair value, with the unrealized gains and losses reported as a separate
component of stockholders' equity. The cost of debt securities is adjusted for
amortization of premiums and accretion of discounts to maturity. Such
amortization is included in interest income. Realized gains and losses and
declines in value judged to be other than temporary, if any, are included in
other income. The cost of securities sold is based on the specific
identification method. Investments held as of December 31, 1996 consist
primarily of U.S. Government and Federal Agency obligations, U.S. corporate
securities and mortgage-backed securities. The maturities range from January 31,
1997 through August 15, 1998.
 
    The Company has established guidelines relative to diversification, credit
ratings and maturities to maintain safety and liquidity. The guidelines are
periodically reviewed and modified to take advantage of trends in yields and
interest rates.
 
    PROPERTY AND EQUIPMENT.  Property and equipment are stated at cost.
Depreciation is computed using the straight-line method over the estimated
useful lives of the assets (principally 7 years). Depreciation of assets
acquired pursuant to capital lease arrangements and leasehold improvements is
over the shorter of the estimated useful life or the lease term.
 
    PATENTS.  Prior to October 1, 1996, patent and patent application costs were
capitalized and amortized over 7 years or the estimated life of the patent, if
less, using the straight-line method. Capitalized costs through October 1, 1996,
will continue to be amortized over the remaining portions of their seven-year
lives. Effective October 1, 1996, patent and patent application costs are
expensed as incurred. The effect in 1996 of this change in accounting estimate
was to increase expenses and net loss by $171,000, or $0.02 per share.
 
    ACCRUED LIABILITIES.  Included in accrued liabilities at December 31, 1995
and 1996 are accrued professional fees totaling $252,000 and $68,000,
respectively.
 
    STOCK-BASED COMPENSATION.  The Company has elected to follow Accounting
Principles Board Opinion No. 25, "Accounting for Stock Issued to Employees"
("APB No. 25"), in accounting for its employee stock options. Under APB No. 25,
compensation expense is recognized only when the exercise price of options is
below the market price of the underlying stock on the date of grant. Such
expense is recognized ratably over the vesting period.
 
    USE OF ESTIMATES.  The preparation of financial statements in conformity
with generally accepted accounting principles requires management to make
estimates and assumptions that affect the reported amounts of assets and
liabilities and disclosure of contingent assets and liabilities at the date of
the financial statements. Estimates also affect the reported amounts of revenues
and expenses during the reporting period. Actual results could differ from these
estimates.
 
                                      F-9
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                   NOTES TO FINANCIAL STATEMENTS (CONTINUED)
 
            (INFORMATION AS OF JUNE 30, 1997 AND FOR THE SIX MONTHS
 
                   ENDED JUNE 30, 1996 AND 1997 IS UNAUDITED)
 
NOTE 1--SUMMARY OF SIGNIFICANT ACCOUNTING POLICIES (CONTINUED)
    RECLASSIFICATIONS.  Certain prior year amounts have been reclassified to
conform with the current year presentation.
 
    NEW ACCOUNTING STANDARD.  In June 1997, the Financial Accounting Standards
Board issued Statement of Financial Accounting Standards No. 130, "REPORTING
COMPREHENSIVE INCOME." This pronouncement, which is required to be adopted
effective January 1, 1998, requires the presentation of a statement of
comprehensive income. Comprehensive income is defined as the change in equity of
a business enterprise during a period resulting from transactions and other
events and circumstances from nonowner sources. Comprehensive income for the
Company, in addition to current net loss, will include unrealized gains and
losses on marketable securities held for sale, currently recorded in
shareholders' equity.
 
NOTE 2--INVESTMENTS
 
    The following is a summary of all of the Company's securities. All of the
Company's securities are classified as available-for-sale securities.
Determination of estimated fair value is based on quoted market prices:
 
<TABLE>
<CAPTION>
                                                           GROSS        GROSS
                                                        UNREALIZED   UNREALIZED     ESTIMATED
                                             COST          GAIN        (LOSS)      FAIR VALUE
                                         -------------  -----------  -----------  -------------
<S>                                      <C>            <C>          <C>          <C>
DECEMBER 31, 1995:
U.S. Treasury obligations and
  obligations of U.S. government
  agencies.............................  $   8,910,313   $ 200,012    $  (3,628)  $   9,106,697
                                         -------------  -----------  -----------  -------------
                                         -------------  -----------  -----------  -------------
DECEMBER 31, 1996:
U.S. Treasury obligations and
  obligations of U.S. government
  agencies.............................  $  20,846,307   $     857    $  (3,841)  $  20,843,323
U.S. corporate securities..............      6,990,759       5,462       (8,591)      6,987,630
Mortgage-backed securities.............      2,971,647       4,951           --       2,976,598
                                         -------------  -----------  -----------  -------------
                                         $  30,808,713   $  11,270    $ (12,432)  $  30,807,551
                                         -------------  -----------  -----------  -------------
                                         -------------  -----------  -----------  -------------
</TABLE>
 
    The gross realized gains on sale of available-for-sale securities for the
years ending December 31, 1994, 1995 and 1996 totaled $5,821, $23,958 and
$212,160, respectively, and the gross realized losses totaled $2,430, $5,554 and
$0, respectively. The net adjustment to unrealized gains (losses) on available-
for-sale securities included as a separate component of stockholders' equity
totaled $(226,110) in 1994, $367,124 in 1995 and $(197,546) in 1996.
 
    Included in cash equivalents at December 31, 1995 is approximately
$27,272,000 related to investments in money market funds. At December 31, 1996,
this amount totaled $4,383,000.
 
                                      F-10
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                   NOTES TO FINANCIAL STATEMENTS (CONTINUED)
 
            (INFORMATION AS OF JUNE 30, 1997 AND FOR THE SIX MONTHS
 
                   ENDED JUNE 30, 1996 AND 1997 IS UNAUDITED)
 
NOTE 3--COLLABORATIVE RESEARCH AGREEMENTS
 
    As of June 30, 1997, the Company was engaged in collaborations with three
pharmaceutical companies which accounted for all of the Company's contract and
license revenues. In addition, the Company has licensed certain technology to
The DuPont Merck Pharmaceutical Company. Details of all of these arrangements
are set forth below.
 
    ELI LILLY AND COMPANY.  In January 1991, the Company and Eli Lilly and
Company ("Lilly") entered into an agreement to promote the discovery and
development of serotonin receptor subtype-selective drugs for the treatment of
serotonin-related disorders. The original term of the collaboration was four
years, but was extended in January 1995 for an additional four-year period. In
October 1996, the size of the collaboration was increased. As part of this
agreement, Lilly is providing funding to the Company to support a specified
number of the Company's scientists who conduct research as part of the
collaboration.
 
    Revenue recognized in the accompanying financial statements is not subject
to repayment. Lilly will also provide the Company with milestone payments and
royalties on sales of any products resulting from the collaboration for a period
of time based upon the term of the related patents.
 
    During 1994, 1995 and 1996, the Company recognized $1,903,000, $1,960,000,
and $2,011,000, respectively, in revenue under this agreement. During the six
month periods ending June 30, 1996 and 1997, the Company recognized $1,006,000
and $2,474,000, respectively, in revenue under this agreement.
 
    MERCK & CO., INC.  In November 1993, the Company and Merck and Co., Inc.
("Merck") entered into an agreement pursuant to which they agreed to collaborate
in the identification and development of alpha-1a antagonists, principally for
the treatment of BPH. The initial term of the collaboration was three years. In
October 1996, the term of the collaboration was extended for an additional
one-year period. Under the terms of the agreement, Merck is providing funding to
the Company to support a specified number of the Company's scientists who
conduct research as part of the collaboration. In addition, Merck is required to
pay royalties on sales of any products resulting from the collaboration and is
required to make payments upon the achievement of certain milestones.
 
    As part of the collaboration, Merck received an exclusive worldwide license
to use the Company's alpha adrenergic drug discovery systems for the development
and commercialization of alpha-1a antagonists, as well as an exclusive worldwide
license under several of the Company's related patents and patent applications.
The Company retained the right to use its alpha adrenergic technology for the
development of alpha adrenergic and other agents that are not alpha-1a
antagonists.
 
    Merck has the right to terminate the Merck Agreement at any time upon 90
days' prior written notice. In the event of any such termination, Merck will not
be required to provide the Company with any research funding that has not come
due prior to such termination or make certain other payments to the Company that
have not come due prior to such termination.
 
    During 1994, 1995 and 1996, the Company recognized approximately $1,556,000,
$1,477,000 and $3,613,000, respectively, in revenue under this agreement. During
the six month periods ending June 30, 1996 and 1997, the Company recognized
$775,000 and $1,150,000, respectively, in revenue under this agreement.
 
    At December 31, 1995 and 1996, the Company had a receivable amounting to
approximately $129,000 and $192,000, respectively, for certain reimbursable
expenditures incurred during the respective periods.
 
                                      F-11
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                   NOTES TO FINANCIAL STATEMENTS (CONTINUED)
 
            (INFORMATION AS OF JUNE 30, 1997 AND FOR THE SIX MONTHS
 
                   ENDED JUNE 30, 1996 AND 1997 IS UNAUDITED)
 
NOTE 3--COLLABORATIVE RESEARCH AGREEMENTS (CONTINUED)
    NOVARTIS PHARMA A.G. (A SUBSIDIARY OF THE SUCCESSOR-IN-INTEREST OF
CIBA-GEIGY LIMITED).  In August 1994, the Company and Ciba-Geigy Limited
("Ciba-Geigy") entered into an agreement pursuant to which they agreed to
collaborate in the identification and development of neuropeptide Y drugs for
the treatment of obesity and eating disorders, as well as cardiovascular
disorders. In May 1996, the Company and Ciba-Geigy entered into a second
agreement and an amendment to the first agreement pursuant to which the term of
the collaboration was extended by one year and the scope of the collaboration
was expanded to provide for research on additional targets for the design of
drugs for the treatment of obesity and eating disorders. In December 1996,
Ciba-Geigy and Sandoz Limited consolidated to form a new company, Novartis A.G.,
the pharmaceutical subsidiary of which is Novartis Pharma A.G. ("Novartis").
Novartis assumed Ciba-Geigy's rights and obligations relating to the
collaboration. The term of the collaboration will expire on August 4, 1998, but
may be further extended by mutual agreement of the parties. As part of the
agreements, Novartis is providing funding to the Company to support a specified
number of the Company's scientists who conduct research as part of the
collaboration. In return for this research support, the Company has granted
Novartis an exclusive world-wide license to use the Company's neuropeptide Y
technology to develop, manufacture and sell compounds that work through
neuropeptide Y receptor subtypes for the treatment of obesity and eating
disorders. Novartis is also required to provide the Company with milestone
payments and royalties on sales of any products resulting from the
collaboration.
 
    During August 1994, Novartis made a $7,500,000 equity investment in the
Company. During December 1995, Novartis made an additional $2,000,000 equity
investment in the Company, bringing its aggregate ownership of outstanding
shares at December 31, 1996 to 9.1%.
 
    During 1994, 1995 and 1996, the Company recognized approximately $1,304,000,
$4,234,000 and $3,319,000, respectively, in revenue under this agreement. During
the six month periods ending June 30, 1996 and 1997, the Company recognized
$1,641,000 and $1,686,000, respectively, in revenue under this agreement.
 
    At December 31, 1995, the Company had recorded approximately $821,000 in
deferred revenue representing advance funding for research to be performed in
the first quarter of 1996.
 
    THE DUPONT MERCK PHARMACEUTICAL COMPANY.  In February 1996, the Company and
The DuPont Merck Pharmaceutical Company ("DuPont Merck") entered into an
agreement pursuant to which the Company granted DuPont Merck a nonexclusive
license to use certain of the Company's alpha adrenergic drug discovery systems
for the development of alpha adrenergic subtype-selective drugs. The license
granted to DuPont Merck is expected to expire in February 1998.
 
                                      F-12
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                   NOTES TO FINANCIAL STATEMENTS (CONTINUED)
 
            (INFORMATION AS OF JUNE 30, 1997 AND FOR THE SIX MONTHS
 
                   ENDED JUNE 30, 1996 AND 1997 IS UNAUDITED)
 
NOTE 4--PROPERTY AND EQUIPMENT
 
    Property and equipment consists of the following as of December 31, 1995 and
1996:
 
<TABLE>
<CAPTION>
                                                                        1995          1996
                                                                    ------------  ------------
<S>                                                                 <C>           <C>
Scientific equipment..............................................  $  2,036,843  $  2,960,011
Furniture and fixtures............................................       171,452       183,902
Office equipment..................................................       383,509       432,941
Leasehold improvements............................................     1,168,550     1,224,850
Software..........................................................        47,700        99,540
Equipment under capitalized leases................................       658,077       658,077
                                                                    ------------  ------------
                                                                       4,466,131     5,559,321
Accumulated depreciation and amortization.........................    (2,233,713)   (2,895,192)
                                                                    ------------  ------------
                                                                    $  2,232,418  $  2,664,129
                                                                    ------------  ------------
                                                                    ------------  ------------
</TABLE>
 
NOTE 5--CAPITAL LEASES
 
    The Company and a bank are parties to a master lease agreement under which
$112,000 in securities in the Company's investment account, which is maintained
by the bank, was restricted as to use at December 31, 1996.
 
    In connection with this master lease, the Company leased laboratory and
computer equipment with a cost basis of $658,077 under capital leases, the last
of which will expire on December 5, 1997. The effective interest rate on the
leases approximates 10.5%. The assets are being depreciated over the related
lease terms. At the end of each lease term, the Company can exercise a purchase
option to acquire the equipment under capital lease at a price equal to 10% of
the original cost of such equipment.
 
    Minimum future lease payments under these capital leases as of December 31,
1996, are as follows:
 
<TABLE>
<S>                                                                 <C>
Year ending December 31, 1997.....................................  $ 112,585
Less amount representing interest.................................     (6,113)
                                                                    ---------
Present value of minimum lease payments...........................  $ 106,472
                                                                    ---------
                                                                    ---------
</TABLE>
 
    Accumulated amortization on leased equipment as of December 31, 1995 and
1996 was $499,125 and $622,882, respectively.
 
NOTE 6--STOCKHOLDERS' EQUITY
 
    COMMON STOCK.  In December 1995, the Company completed an initial public
offering of 2,000,000 shares of its common stock. During January 1996, the
underwriters of the initial public offering exercised their over-allotment
option to purchase an additional 213,000 shares of common stock. As part of the
initial public offering, the then existing convertible redeemable preferred
stock automatically converted into 4,928,382 shares of common stock.
 
                                      F-13
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                   NOTES TO FINANCIAL STATEMENTS (CONTINUED)
 
            (INFORMATION AS OF JUNE 30, 1997 AND FOR THE SIX MONTHS
 
                   ENDED JUNE 30, 1996 AND 1997 IS UNAUDITED)
 
NOTE 6--STOCKHOLDERS' EQUITY (CONTINUED)
    In connection with the sale of certain convertible redeemable preferred
stock which was converted into common stock upon completion of the Company's
initial public offering, the placement agents of certain convertible redeemable
preferred stock received warrants to purchase 192,458 shares of the Company's
common stock at an exercise price of $9.50 per share. During May 1996, 48,114 of
these warrants were exercised. At December 31, 1996 and at June 30, 1997,
144,344 shares of common stock were reserved for issuance upon exercise of the
remaining warrants which have an expiration date of January 19, 1998.
 
    STOCKHOLDERS' RIGHTS PLAN.  In November 1995, the Company's Board of
Directors approved the adoption of a stockholders' rights plan (the "Rights
Plan"). The Rights Plan provides for the distribution of one right (a "Right")
with respect to each share of outstanding common stock and any new issuances of
common stock. Upon completion of the initial public offering in December 1995,
the Board of Directors designated Series A Junior Participating Preferred Stock
and declared a dividend of one Right with respect to each share of common stock
outstanding. Each Right will become exercisable to purchase from the Company, at
an exercise price of $160.00, 1/1000th of a share of Series A Junior
Participating Preferred Stock or that number of shares of common stock having a
market value equal to two times the exercise price of the Right. The Rights
generally become exercisable for the Series A Junior Participating Preferred
Stock ten days following the announcement by any person or group of an intention
to make a tender offer or exchange offer, the consummation of which would cause
any person or group to become the owner of 15% or more of the outstanding common
stock, and generally become exercisable for common stock ten days following the
acquisition by any person or group of more than 15% of the outstanding common
stock. The Rights will expire in the year 2005. The Rights Plan may discourage
certain types of transactions involving an actual or potential change in control
of the Company.
 
    Each 1/1000th of a share of Series A Junior Participating Preferred Stock
will have one vote. Each share of Series A Junior Participating Preferred Stock
will be entitled to a preferential quarterly dividend per share equal to the
larger of (i) an amount equal to any dividend declared on the common stock and
(ii) $.00025. Additionally, in the event of a liquidation, each 1/1000th of a
share of the Series A Junior Participating Preferred Stock would be entitled to
a preferential liquidation payment equal to $0.01 plus an amount equal to the
amount that would be distributed with respect to each share of common stock.
 
    PREFERRED STOCK.  The Company is authorized to issue up to 1,000,000 shares
of preferred stock, 200,000 of which is designated as Series A Junior
Participating and 800,000 of which is undesignated. The Board of Directors is
authorized to provide for the issuance of preferred stock in one or more classes
or series and to fix the number of shares constituting any such class or series,
and the voting powers, designations, preferences and relative, participating,
optional or other special rights and qualifications, limitations or restrictions
thereof, including the dividend rights, dividend rate, terms of redemption,
redemption price or prices, conversion rights and liquidation preferences of the
shares constituting any class or series, without any further vote or action by
the shareholders of the Company.
 
                                      F-14
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                   NOTES TO FINANCIAL STATEMENTS (CONTINUED)
 
            (INFORMATION AS OF JUNE 30, 1997 AND FOR THE SIX MONTHS
 
                   ENDED JUNE 30, 1996 AND 1997 IS UNAUDITED)
 
NOTE 7--INCENTIVE/STOCK PLANS
 
    The Company currently has three stock incentive plans; the 1996 Incentive
Plan (the "1996 Plan"), the 1988 Amended and Restated Incentive Plan (the "1988
Plan" and, together with the 1996 Plan, the "Incentive Plans") and the 1996
Nonemployee Director Stock Option Plan (the "Director Plan").
 
    The Company has elected to follow APB No. 25 in accounting for its employee
stock options because, as discussed below, the alternative fair value accounting
provided for under Financial Accounting Standards Board Statement No. 123
"Accounting for Stock-Based Compensation" ("SFAS No. 123") requires use of
option valuation models that were not developed for use in valuing employee
stock options. Under APB No. 25, compensation expense is required to be
recognized when the exercise price of the Company's employee stock options is at
a price below the market price of the underlying stock on the date of grant.
 
    INCENTIVE PLANS.  The 1996 Plan and the 1988 Plan were adopted in October
1995 and June 1988, respectively. Under both plans, a committee of the Company's
Board of Directors (the "Committee") approves the sale of shares and the
granting of nonstatutory or incentive stock options. In addition, under the 1996
Plan, the committee may grant stock appreciation rights to employees and
consultants of the Company. The purchase price for shares and the exercise price
of options are determined by the Committee (although, the exercise price of
incentive stock options may be no less than the fair market value of the common
stock on the date of grant). The 1996 Plan replaced the 1988 Plan, effective as
of January 1, 1996, with respect to all future stock and option awards by the
Company to its employees and consultants.
 
    In general, options granted under the Incentive Plans vest over a four-year
period. Unvested options are forfeited upon termination of the employee or
consulting relationship. Vested options, if not exercised within a specified
period of time following the termination of the employment or consulting
relationship, are also forfeited. Options generally expire 10 years from the
date of grant. Shares of common stock sold under the Incentive Plans are also
generally subject to vesting. Unvested shares of common stock which are sold
under the Incentive Plans may be repurchased by the Company, at its option, at
the original sale price upon termination of the employment or consulting
relationship of the holder with the Company. Options granted and shares sold to
employees under the Incentive Plans generally become fully vested upon the
occurrence of a change in control of the Company (as defined) if the holders
thereof are terminated in connection with such change in control other than for
cause (as defined). The maximum number of shares subject to the 1996 Plan is
1,100,000. At December 31, 1996 and at June 30, 1997, 681,738 and 680,638
shares, respectively, remain available for future awards under the 1996 Plan. As
of December 31, 1996 and as of June 30, 1997, no stock appreciation rights had
been awarded under the 1996 Plan.
 
    DIRECTOR PLAN.  The Director Plan was adopted by the Board of Directors in
March 1996 and approved by the stockholders in June 1996. In general, under the
Director Plan, each nonemployee director of the Company is automatically granted
an option on the date that he or she first becomes a member of the Board of
Directors. In addition, on June 1 of each year, commencing in 1997, each
nonemployee director is granted an additional option to purchase 2,500 shares of
common stock at an exercise price equal to the fair market value on the date of
grant. The maximum number of shares subject to the Director Plan is 250,000. In
general, options granted under the Director Plan become exercisable as to
1/24th of the total number of shares subject to the option for each calendar
month elapsed after the date of the option grant. In the event of a change in
control of the Company (as defined) or the death or disability of the optionee,
 
                                      F-15
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                   NOTES TO FINANCIAL STATEMENTS (CONTINUED)
 
            (INFORMATION AS OF JUNE 30, 1997 AND FOR THE SIX MONTHS
 
                   ENDED JUNE 30, 1996 AND 1997 IS UNAUDITED)
 
NOTE 7--INCENTIVE/STOCK PLANS (CONTINUED)
any unvested portion of the options will become exercisable in full. Options
granted under the Director Plan will expire upon the earliest to occur of the
following: (a) the expiration of ten years from the date of grant of the option,
(b) one year after the optionee ceases to be a director of the Company by reason
of death or disability of the optionee, or (c) three months after the date the
optionee ceases to be a director of the Company for any reason other than death
or disability.
 
    Option activities under the Incentive Plans and the Director Plan are
detailed in the following table:
 
<TABLE>
<CAPTION>
                                                                                                            WEIGHTED
                                                                                             DIRECTOR    AVERAGE OPTION
                                                                   1996 PLAN    1988 PLAN      PLAN      PRICE PER SHARE
                                                                  -----------  -----------  -----------  ---------------
<S>                                                               <C>          <C>          <C>          <C>
Outstanding at January 1, 1994..................................      --          226,179       --          $    1.76
Granted.........................................................      --          105,066       --          $    1.78
Exercised.......................................................      --             (225)      --          $    1.76
Forfeited.......................................................      --           (3,675)      --          $    1.76
                                                                  -----------  -----------  -----------
Outstanding at December 31, 1994................................      --          327,345       --          $    1.77
Granted.........................................................      --           36,328       --          $    2.00
Exercised.......................................................      --          (11,125)      --          $    1.76
Forfeited.......................................................      --          (12,773)      --          $    1.77
                                                                  -----------  -----------  -----------
Outstanding at December 31, 1995................................      --          339,775       --          $    1.79
Granted.........................................................     443,762       --           17,500      $   13.24
Exercised.......................................................      (2,500)     (45,626)      --          $    1.77
Forfeited.......................................................     (25,500)      (2,638)      --          $   11.26
                                                                  -----------  -----------  -----------
Outstanding at December 31, 1996................................     415,762      291,511       17,500      $    8.55
Granted (unaudited).............................................      36,500       --           15,000      $   13.78
Exercised (unaudited)...........................................      --          (13,349)      --          $    1.77
Forfeited (unaudited)...........................................     (35,400)      (7,660)      (2,500)     $   12.30
                                                                  -----------  -----------  -----------
Outstanding at June 30, 1997 (unaudited)........................     416,862      270,502       30,000      $    8.98
                                                                  -----------  -----------  -----------
                                                                  -----------  -----------  -----------
Exercisable at December 31, 1994................................      --          149,555       --          $    1.76
                                                                  -----------  -----------  -----------
                                                                  -----------  -----------  -----------
Exercisable at December 31, 1995................................      --          184,125       --          $    1.76
                                                                  -----------  -----------  -----------
                                                                  -----------  -----------  -----------
Exercisable at December 31, 1996................................       8,375      189,549        5,034      $    2.72
                                                                  -----------  -----------  -----------
                                                                  -----------  -----------  -----------
Exercisable at June 30, 1997 (unaudited)........................      49,875      211,298        7,500      $    4.71
                                                                  -----------  -----------  -----------
                                                                  -----------  -----------  -----------
</TABLE>
 
                                      F-16
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                   NOTES TO FINANCIAL STATEMENTS (CONTINUED)
 
            (INFORMATION AS OF JUNE 30, 1997 AND FOR THE SIX MONTHS
 
                   ENDED JUNE 30, 1996 AND 1997 IS UNAUDITED)
 
NOTE 7--INCENTIVE/STOCK PLANS (CONTINUED)
    At December 31, 1996, for each of the following classes of options as
determined by range of exercise price, the information regarding
weighted-average exercise prices and weighted-average remaining contractual
lives of each said class is as follows:
 
<TABLE>
<CAPTION>
                                            WEIGHTED-AVERAGE    WEIGHTED-AVERAGE     NUMBER OF   WEIGHTED-AVERAGE
                                NUMBER OF   EXERCISE PRICE OF       REMAINING         OPTIONS    EXERCISE PRICE OF
                                 OPTIONS       OUTSTANDING     CONTRACTUAL LIFE OF   CURRENTLY   OPTIONS CURRENTLY
OPTION CLASS                   OUTSTANDING       OPTIONS       OUTSTANDING OPTIONS  EXERCISABLE     EXERCISABLE
- -----------------------------  -----------  -----------------  -------------------  -----------  -----------------
<S>                            <C>          <C>                <C>                  <C>          <C>
Prices ranging from
  $1.76-$2.00................     307,011       $    1.80            6.0 years         189,675       $    1.77
Prices ranging from
  $10.125-$13.00.............     236,262       $   11.67            9.9 years          --              --
Prices ranging from
  $16.50-$16.75..............     181,500       $   16.57            9.3 years          13,283       $   16.75
</TABLE>
 
    The following table discloses for each of the years ending December 31, 1995
and 1996, the number of options granted net of same-year forfeitures, the
weighted-average fair values and the weighted-average exercise prices for those
options with exercise prices that equaled or were less than the market price of
the common stock on the date of grant. There were no options granted with an
exercise price above the market price of the common stock on the date of grant.
<TABLE>
<CAPTION>
                                                                             1995                           1996
                                                              -----------------------------------  ----------------------
<S>                                                           <C>          <C>        <C>          <C>          <C>
                                                               NUMBER OF     FAIR      EXERCISE     NUMBER OF     FAIR
                                                                OPTIONS      VALUE       PRICE       OPTIONS      VALUE
                                                              -----------  ---------  -----------  -----------  ---------
Exercise price equals market price..........................      --          --          --          414,262   $    5.75
Exercise price less than market price.......................      35,678   $    5.12   $    1.97       20,500   $   14.44
 
<CAPTION>
 
<S>                                                           <C>
                                                               EXERCISE
                                                                 PRICE
                                                              -----------
Exercise price equals market price..........................   $   13.80
Exercise price less than market price.......................   $    3.34
</TABLE>
 
    During 1994 and 1995, the Company sold shares of common stock under the 1988
Plan totaling 14,305 and 8,810, respectively, at prices ranging from $1.76 to
$2.00 per share. At December 31, 1996, 8,773 of the shares sold under the 1988
Plan remain subject to repurchase at an aggregate price of approximately
$16,000.
 
    OTHER DISCLOSURES.  Pro forma information regarding net loss and net loss
per share is required by SFAS No. 123, and has been determined as if the Company
had been accounting for its employee stock options under the fair value method
of SFAS No. 123. The fair value for these options was estimated at the date of
grant using a Black-Scholes option pricing model with the following assumptions
for 1995 and 1996, respectively: weighted average risk-free interest rates of
6.50% and 6.34%; no dividends; volatility factors of the expected market price
of the Company's common stock of .352; and for both periods a weighted-average
expected life of the options of 5 years. Options granted in 1995 were issued
prior to the initial public offering.
 
    The Black-Scholes option valuation model was developed for use in estimating
the fair value of traded options which have no vesting restrictions and are
fully transferable. In addition, option valuation models require the input of
highly subjective assumptions including the expected stock price volatility.
Because the
 
                                      F-17
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                   NOTES TO FINANCIAL STATEMENTS (CONTINUED)
 
            (INFORMATION AS OF JUNE 30, 1997 AND FOR THE SIX MONTHS
 
                   ENDED JUNE 30, 1996 AND 1997 IS UNAUDITED)
 
NOTE 7--INCENTIVE/STOCK PLANS (CONTINUED)
Company's employee stock options have characteristics significantly different
from those of traded options, and because changes in the subjective input
assumptions can materially affect the fair value estimate, in management's
opinion, the existing models do not necessarily provide a reliable single
measure of the fair value of its employee stock options.
 
    For purposes of pro forma disclosures, the estimated fair value of the
options is amortized to expense over the options' vesting period. The Company's
pro forma information follows:
 
<TABLE>
<CAPTION>
                                                                      1995           1996
                                                                  -------------  -------------
<S>                                                               <C>            <C>
Pro forma net loss..............................................    $(3,380,614)   $(2,847,122)
Pro forma loss per share........................................         $(4.78)        $(0.38)
</TABLE>
 
    The pro forma information above is not likely to be representative of the
effects on reported net loss for future years as options are generally granted
each year and vest over several years.
 
    For certain options granted during 1996, the Company has recorded pursuant
to APB No. 25 approximately $388,000 of deferred compensation expense
representing the difference between the exercise price thereof and the market
value of the common stock as of the date of grant. This compensation expense is
amortized over the vesting period of each option granted. Amortization of
deferred compensation under the Incentive Plans amounted to approximately
$86,000 and $179,000 during 1995 and 1996, respectively. In addition,
approximately $121,000 of deferred compensation as it relates to the Incentive
Plans was reversed during 1996 due to the forfeiture of the unvested options.
 
NOTE 8--INCOME TAXES
 
    The liability method is used in accounting for income taxes. Under this
method, deferred tax assets and liabilities are determined based on differences
between financial reporting and tax bases of assets and liabilities and are
measured using the enacted tax rates and laws that will be in effect when the
differences are expected to reverse.
 
    At December 31, 1995 and 1996, the Company had net operating loss
carryforwards of approximately $19,000,000 and $21,000,000, respectively, for
Federal income tax purposes that will expire principally in the years 2002
through 2011. In addition, the Company had research and development credit
carryforwards which will expire principally in 2002 through 2009. For financial
reporting purposes, a valuation allowance has been recognized to offset the
deferred tax assets related to these carryforwards. Due to the limitations
imposed by the Tax Reform Act of 1986, and as a result of a significant change
in the Company's ownership in 1993, the utilization of approximately $6,000,000
of net operating loss carryforwards is subject to annual limitation. The
utilization of the research and development credits is similarly limited.
 
                                      F-18
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                   NOTES TO FINANCIAL STATEMENTS (CONTINUED)
 
            (INFORMATION AS OF JUNE 30, 1997 AND FOR THE SIX MONTHS
 
                   ENDED JUNE 30, 1996 AND 1997 IS UNAUDITED)
 
NOTE 8--INCOME TAXES (CONTINUED)
    A reconciliation of the Company's income tax expense (benefit) at U.S.
federal statutory tax rates to recorded income tax expense (benefit) is as
follows:
 
<TABLE>
<CAPTION>
                                                        1994           1995           1996
                                                    -------------  -------------  ------------
<S>                                                 <C>            <C>            <C>
Tax at U.S. statutory rates.......................  $  (1,879,000) $  (1,145,000) $   (895,000)
State income taxes................................       (328,000)      (200,000)     (156,000)
Research and development credit...................       (330,000)      --             --
Other.............................................         23,000         37,000         8,000
Valuation allowance recorded......................      2,514,000      1,308,000     1,043,000
                                                    -------------  -------------  ------------
  Recorded tax provision..........................  $    --        $    --        $    --
                                                    -------------  -------------  ------------
                                                    -------------  -------------  ------------
</TABLE>
 
    Significant components of the Company's deferred tax assets as of December
31, 1995 and 1996 are as follows:
 
<TABLE>
<CAPTION>
                                                                     1995            1996
                                                                 -------------  --------------
<S>                                                              <C>            <C>
Deferred tax assets:
  Net operating loss carryforwards.............................  $   7,643,000  $    8,579,000
  Research and development credit carryforwards................      1,500,000       1,500,000
  Book over tax amortization...................................        164,000         271,000
                                                                 -------------  --------------
    Total deferred tax assets..................................      9,307,000      10,350,000
  Valuation allowance..........................................     (9,307,000)    (10,350,000)
                                                                 -------------  --------------
  Net deferred tax assets......................................  $    --        $     --
                                                                 -------------  --------------
                                                                 -------------  --------------
</TABLE>
 
NOTE 9--COMMITMENTS
 
    The Company leases facilities under an agreement expiring on December 31,
1999.
 
    Rent expense for the years ended December 31, 1994, 1995 and 1996
approximated $544,000, $654,000, and $674,000, respectively, and included
executory costs of $66,000, $80,000 and $93,000, respectively. In November,
1996, a standby letter of credit for $580,000 was issued to the landlord as a
security deposit (expires November, 1997). The Company is to renew the letter of
credit annually during the duration of the lease. As of December 31, 1996, a
bank imposed restriction has been placed on $600,000 in securities held in the
Company's investment account to secure the letter of credit.
 
    As of December 31, 1996, future minimum annual payments under the lease are
as follows:
 
<TABLE>
<S>                                                               <C>
1997............................................................  $ 691,000
1998............................................................    691,000
1999............................................................    691,000
                                                                  ---------
                                                                  $2,073,000
                                                                  ---------
                                                                  ---------
</TABLE>
 
                                      F-19
<PAGE>
                      SYNAPTIC PHARMACEUTICAL CORPORATION
 
                   NOTES TO FINANCIAL STATEMENTS (CONTINUED)
 
            (INFORMATION AS OF JUNE 30, 1997 AND FOR THE SIX MONTHS
 
                   ENDED JUNE 30, 1996 AND 1997 IS UNAUDITED)
 
NOTE 9--COMMITMENTS (CONTINUED)
    The lease includes an escalation clause which provides for increased
payments tied to increases in the Consumer Price Index.
 
    The Company is a party to two license agreements with major research
universities. Under the terms of the agreements, the Company received world-wide
non-exclusive licenses under patents issued in December 1980 and January 1991,
which patents expire in 1997 through 2008. One of these agreements requires a
$10,000 annual payment. The Company is also committed under these agreements to
pay royalties on future net sales of products employing the technology or
falling under claims of the patents covered by these agreements.
 
    The Company has an employment agreement with its Chairman, President and
Chief Executive Officer which provides for severance payments of up to one year
of base salary upon the occurrence of certain events, including early
termination and termination upon a change in control, as defined. In addition to
severance payments, under certain circumstances, the agreement calls for
immediate vesting of any unvested shares of common stock and stock options.
 
    At December 31, 1996, the Company had entered into agreements with each of
its Senior Vice President and Chief Financial Officer, Senior Vice President for
Research and Development, Vice President and General Counsel and Vice President
of Business Development which provide for severance payments in amounts equal to
50% of annual base salary, on substantially the same terms as stated above. In
addition to severance, under certain circumstances, the agreements call for
immediate vesting of any unvested shares of common stock and stock options.
 
    At December 31, 1996, the Company had committed approximately $1,800,000 to
provide for increased capacity in the Company's assay systems, certain
improvements in data base management and the construction and equipping of a
laboratory related to the expansion in the Lilly collaboration. During 1997, it
is likely that the Company will commit additional resources for the construction
and equipping of additional laboratory space.
 
NOTE 10--EMPLOYEE BENEFIT PLANS
 
    The Company established a defined contribution employee retirement plan (the
"Plan") effective January 1, 1990, conforming to Section 401(k) of the Internal
Revenue Code ("IRC"). All eligible employees with six months service may elect
to have a portion of their salary deducted and contributed to the Plan up to the
maximum allowable limitations of the IRC. Effective January 1, 1996, the Company
increased its matching contribution from 25% to 50% of each participant's
contribution up to the first 5% of annual compensation (as defined) with a
maximum employer contribution of 2.5% of a participant's compensation. The
Company's matching portion, which amounted to approximately $40,400, $42,300 and
$103,000 for the years ended December 31, 1994, 1995 and 1996, respectively,
vests over a six-year period.
 
    The Company currently provides medical, dental, long-term disability and
life insurance benefits for its full-time employees. The Company does not
presently provide any post-retirement health benefits.
 
NOTE 11--RELATED PARTY TRANSACTIONS
 
    On June 14, 1994, an executive officer was advanced $400,000, evidenced by a
secured note bearing interest at an annual rate of 6.7%. The note, including
interest thereon, was repaid in full during December 1994.
 
                                      F-20
<PAGE>
- --------------------------------------------------------------------------------
- --------------------------------------------------------------------------------
 
    NO DEALER, SALES REPRESENTATIVE OR ANY OTHER PERSON HAS BEEN AUTHORIZED TO
GIVE ANY INFORMATION OR TO MAKE ANY REPRESENTATIONS IN CONNECTION WITH THE
OFFERING OTHER THAN THOSE CONTAINED IN THIS PROSPECTUS AND, IF GIVEN OR MADE,
SUCH INFORMATION OR REPRESENTATIONS MUST NOT BE RELIED UPON AS HAVING BEEN
AUTHORIZED BY THE COMPANY OR ANY UNDERWRITER. THIS PROSPECTUS DOES NOT
CONSTITUTE AN OFFER OF ANY SECURITIES OTHER THAN THOSE TO WHICH IT RELATES OR AN
OFFER TO SELL, OR A SOLICITATION OF ANY OFFER TO BUY, TO ANY PERSON IN ANY
JURISDICTION IN WHICH SUCH OFFER OR SOLICITATION IS NOT AUTHORIZED, OR TO ANY
PERSON TO WHOM IT IS UNLAWFUL TO MAKE SUCH OFFER OR SOLICITATION. NEITHER THE
DELIVERY OF THIS PROSPECTUS NOR ANY SALE MADE HEREUNDER SHALL, UNDER ANY
CIRCUMSTANCES, CREATE ANY IMPLICATION THAT THERE HAS BEEN NO CHANGE IN THE
AFFAIRS OF THE COMPANY SINCE THE DATE HEREOF OR THAT THE INFORMATION CONTAINED
HEREIN IS CORRECT AS OF ANY TIME SUBSEQUENT TO THE DATE HEREOF.
 
                            ------------------------
 
                               TABLE OF CONTENTS
 
<TABLE>
<CAPTION>
                                                                            PAGE
                                                                            ----
<S>                                                                         <C>
Prospectus Summary........................................................    3
Risk Factors..............................................................    7
Special Note Regarding Forward-Looking Statements.........................   17
Use of Proceeds...........................................................   18
Price Range of Common Stock...............................................   19
Dividend Policy...........................................................   19
Dilution..................................................................   20
Capitalization............................................................   21
Selected Financial Data...................................................   22
Management's Discussion and Analysis of Financial Condition and Results of
  Operations..............................................................   23
Business..................................................................   28
Management................................................................   54
Principal Stockholders....................................................   57
Description of Capital Stock..............................................   59
Underwriting..............................................................   64
Legal Matters.............................................................   66
Experts...................................................................   66
Available Information.....................................................   66
Information Incorporated by Reference.....................................   66
Index to Financial Statements.............................................  F-1
</TABLE>
 
                                2,500,000 SHARES
                                     [LOGO]
 
                                  COMMON STOCK
 
                             ---------------------
 
                                   PROSPECTUS
 
                             ---------------------
 
                            BEAR, STEARNS & CO. INC.
                               HAMBRECHT & QUIST
                     VECTOR SECURITIES INTERNATIONAL, INC.
 
                                           , 1997
 
- --------------------------------------------------------------------------------
- --------------------------------------------------------------------------------
<PAGE>
                                    PART II
 
                       INFORMATION NOT REQUIRED IN PROSPECTUS
 
ITEM 14. OTHER EXPENSES OF ISSUANCE AND DISTRIBUTION.
 
    The following table sets forth all expenses payable by the Registrant in
connection with the sale of the Common Stock being registered, other than
underwriting discounts and commissions. All of the amounts shown are estimates,
except the Commission registration fee and the NASD filing fee.
 
<TABLE>
<S>                                                                                 <C>
Registration fee..................................................................  $  12,252
Listing fee.......................................................................     15,000
NASD fee..........................................................................      4,544
Blue sky fees and expenses........................................................     15,000
Printing and engraving expenses...................................................    150,000
Legal fees and expenses...........................................................    200,000
Accounting fees and expenses......................................................     50,000
Transfer agent fees and registrar fees............................................     15,000
Miscellaneous expenses............................................................     38,204
                                                                                    ---------
    Total.........................................................................  $ 500,000
                                                                                    ---------
                                                                                    ---------
</TABLE>
 
ITEM 15. INDEMNIFICATION OF DIRECTORS AND OFFICERS.
 
    (a) As permitted by Section 102(b)(7) of the Delaware General Corporation
Law (the "DGCL"), Article VII of the Company's Restated Certificate of
Incorporation (the "Certificate of Incorporation") eliminates the liability of
the Company's directors to the Company and its stockholders, except for
liabilities related to breach of duty of loyalty to the Company and its
stockholders, acts or omissions not in good faith or which involve intentional
misconduct or a knowing violation of law, any transaction from which the
director derives an improper personal benefit and certain other liabilities and,
in the event of an amendment to the DGCL, eliminates such personal liability of
the Company's directors to the fullest extent permitted by the DGCL, as so
amended.
 
    (b) Section 145 of the DGCL provides that a corporation may, under certain
circumstances, indemnify its directors and officers against expenses, judgments,
fines and amounts paid in settlement actually or reasonably incurred by them in
such capacities. In addition, Article IX of the Company's Amended and Restated
By-Laws requires the Company to indemnify any person who is, was or has agreed
to become a director, officer or employee against expense, liability and loss
actually or reasonably incurred or suffered by them.
 
    (c) The Company has also agreed to indemnify its officers and directors
pursuant to the indemnification agreements it has entered into with each such
officer and director, against any and all expenses, losses, claims, damages and
liabilities incurred by each such officer and director for or as a result of
actions taken or not taken while each such officer or director was acting in his
or her capacity as a director, officer, employee or agent of the Company.
 
    (d) The Third Amended and Restated Registration Rights Agreement entered
into by the Company and certain holders (the "Holders") of shares of its
registrable securities, provides for cross-indemnification of the Holders whose
shares are included in a registration, qualification or compliance under the
Securities Act, and of the Company, its officers and directors for certain
liabilities arising in connection with such registration, qualification or
compliance, including those liabilities arising under the Securities Act.
 
                                      II-1
<PAGE>
    (e) Reference is made to the Form of Underwriting Agreement (filed as
Exhibit 1.1 to this Registration Statement) which provides for indemnification
in certain instances by the Underwriters of the directors and officers of the
Company who sign this Registration Statement and certain controlling persons of
the Company against certain liabilities, including those arising under the
Securities Act.
 
    (f) There is currently in effect directors and officers liability insurance
which insures directors and officers of the Company.
 
ITEM 16. EXHIBITS AND FINANCIAL STATEMENT SCHEDULES.
 
    (a) Exhibits
 
<TABLE>
<CAPTION>
EXHIBIT NO.                                         DESCRIPTION OF EXHIBIT
- -----------  -----------------------------------------------------------------------------------------------------
<C>          <S>
 
      *1.1   Form of Underwriting Agreement
 
     4.1(a)  Amended and Restated Certificate of Incorporation of the Company, filed December 19, 1995
             (incorporated by reference to Exhibit 3.1(a) to the Company's Quarterly Report on Form 10-Q filed for
             the quarter ended June 30, 1996, Commission File Number 0-27324)
 
     4.1(b)  Certificate of Designations of Series A Junior Participating Preferred Stock filed December 19, 1995
             (incorporated by reference to Exhibit 3.1(b) to the Company's Quarterly Report on Form 10-Q filed for
             the quarter ended December 31, 1995, Commission File Number 0-27324)
 
     4.1(c)  Certificate of Amendment of the Amended and Restated Certificate of Incorporation of the Company,
             filed June 5, 1996 (incorporated by reference to Exhibit 3.1(c) to the Company's Quarterly Report on
             Form 10-Q filed for the quarter ended June 30, 1996, Commission File Number 0-27324)
 
       4.2   Amended and Restated By-Laws of the Company, as amended on June 4, 1996 (incorporated by reference to
             Exhibit 3.2 to the Company's Quarterly Report on Form 10-Q filed for the quarter ended June 30, 1996,
             Commission File Number 0-27324)
 
       4.3   Specimen of Certificate of Common Stock of the Company (incorporated by reference to Exhibit 4 to the
             Company's Registration Statement on Form S-1, as amended (File Number 33-98366), which became
             effective on December 13, 1995)
 
       4.4   Rights Agreement dated as of December 11, 1995, between the Company and Chase Mellon Shareholder
             Services, as Rights Agent (incorporated by reference to Exhibit 4.2 to the Company's Annual Report on
             Form 10-K filed for the fiscal year ended December 31, 1995, Commission File Number 0-27324)
 
        *5   Opinion of Baker & Botts, L.L.P. (including the consent of such firm) regarding legality of
             securities being offered
 
     *23.1   Consent of Baker & Botts, L.L.P. (to be included as part of its opinion to be filed as Exhibit 5
             hereto)
 
      23.2   Consent of Ernst & Young LLP, independent auditors
 
        24   Power of Attorney (included on page II-5)
</TABLE>
 
- ------------------------
 
*   To be filed by amendment.
 
                                      II-2
<PAGE>
    (b) Supplemental Financial Statement Schedules
 
    None.
 
    All other schedules are omitted because they are not required, are not
applicable or the information is included in the Financial Statements or notes
thereto.
 
ITEM 17. UNDERTAKING.
 
    The undersigned Registrant hereby undertakes that, for purposes of
determining any liability under the Securities Act, each filing of the
Registrant's annual report pursuant to Section 13(a) or Section 15(d) of the
Exchange Act (and, where applicable, each filing of an employee benefit plan's
annual report pursuant to Section 15(d) of the Exchange Act) that is
incorporated by reference in the Registration Statement shall be deemed to be a
new registration statement relating to the securities offered therein, and the
offering of such securities at that time shall be deemed to be the initial bona
fide offering thereof.
 
    Insofar as indemnification for liabilities arising under the Securities Act
may be permitted to directors, officers and controlling persons of the
Registrant pursuant to the DGCL, the Restated Certificate and Bylaws, or
otherwise, the Registrant has been advised that in the opinion of the Commission
such indemnification is against public policy as expressed in the Securities
Act, and is, therefore, unenforceable. In the event that a claim for
indemnification against such liabilities (other than payment by the Registrant
of expenses incurred or paid by a director, officer or controlling person of the
Registrant in the successful defense of any action, suit or proceeding) is
asserted by such director, officer or controlling person in connection with the
securities being registered, the Registrant will, unless in the opinion of its
counsel the matter has been settled by controlling precedent, submit to a court
of appropriate jurisdiction the question whether such indemnification by it is
against public policy as expressed in such Securities Act and will be governed
by the final adjudication of such issue.
 
    The undersigned Registrant hereby undertakes that:
 
        (1) For purposes of determining any liability under the Securities Act,
    the information omitted from the form of prospectus filed as part of this
    registration statement in reliance upon Rule 430A and contained in the form
    of prospectus filed by the Registrant pursuant to Rule 424(b)(1) or (4) or
    497(h) under the Securities Act shall be deemed to be part of this
    registration statement as of the time it was declared effective.
 
        (2) For the purpose of determining any liability under the Securities
    Act, each post-effective amendment that contains a form of prospectus shall
    be deemed to be a new registration statement relating to the securities
    offered therein, and the offering of such securities at that time shall be
    deemed to be the initial BONA FIDE offering thereof.
 
                                      II-3
<PAGE>
                                   SIGNATURES
 
    Pursuant to the requirements of the Securities Act of 1933, the Company
certifies that it has reasonable grounds to believe that it meets all the
requirements for filing on Form S-3 and has duly caused this Registration
Statement to be signed on its behalf by the undersigned, thereunto duly
authorized, in the City of New York, State of New York, on the 8th day of
October 1997.
 
<TABLE>
<S>                             <C>  <C>
                                SYNAPTIC PHARMACEUTICAL CORPORATION
 
                                By:  /s/ KATHLEEN P. MULLINIX
                                     -----------------------------------------
                                     Kathleen P. Mullinix
                                     Chairman, President and Chief Executive
                                     Officer
</TABLE>
 
                                      II-4
<PAGE>
                               POWER OF ATTORNEY
 
    KNOW ALL MEN BY THESE PRESENT, that each person whose signature appears
below constitutes and appoints Kathleen P. Mullinix and Robert L. Spence or
either of them, as such person's true and lawful attorneys-in-fact and agents,
with full power of substitution and resubstitution, for such person and in his
or her name, place and stead, in any and all capacities, to sign any and all
amendments (including post-effective amendments) to this Registration Statement
and any registration statement related to this Registration Statement and filed
pursuant to Rule 462 under the Securities Act of 1933, and to file the same,
with all exhibits thereto and other documents in connection therewith, with the
Securities and Exchange Commission, granting unto said attorneys-in-fact and
agents and each of them, full power and authority to do and perform each and
every act and thing requisite and to be done in connection therewith as fully to
all intents and purposes as he or she might or could do in person, hereby
ratifying and confirming all that said attorneys-in-fact and agents, or their
substitute or substitutes may lawfully do or cause to be done by virtue thereof.
 
    Pursuant to the requirements of the Securities Act of 1933, this
Registration Statement on Form S-3 has been signed below by the following
persons (which persons constitute a majority of the Board of Directors) in the
capacities and on the dates indicated.
 
          SIGNATURE                       TITLE                    DATE
- ------------------------------  --------------------------  -------------------
 
                                Chairman, President and
   /s/ KATHLEEN P. MULLINIX       Chief Executive Officer
- ------------------------------    (Principal Executive        October 7, 1997
      Kathleen P. Mullinix        Officer)
 
                                Senior Vice President,
   /s/ ROBERT L. SPENCE           Chief Financial Officer
- ------------------------------    and Treasurer (Principal    October 7, 1997
      Robert L. Spence            Financial and Accounting
                                  Officer)
 
   /s/ JONATHAN J. FLEMING
- ------------------------------  Director                      October 7, 1997
      Jonathan J. Fleming
 
   /s/ ZOLA P. HOROVITZ
- ------------------------------  Director                      October 2, 1997
      Zola P. Horovitz
 
   /s/ ERIC R. KANDEL
- ------------------------------  Director                      October 5, 1997
      Eric R. Kandel
 
   /s/ JOHN LYONS
- ------------------------------  Director                      October 7, 1997
      John Lyons
 
   /s/ SANDRA PANEM
- ------------------------------  Director                      October 7, 1997
      Sandra Panem
 
   /s/ ALISON TAUNTON-RIGBY
- ------------------------------  Director                      October 2, 1997
      Alison Taunton-Rigby
 
                                      II-5
<PAGE>
                                 EXHIBIT INDEX
 
<TABLE>
<CAPTION>
EXHIBIT NO.                                         DESCRIPTION OF EXHIBIT
- -----------  -----------------------------------------------------------------------------------------------------
<C>          <S>
 
      *1.1   Form of Underwriting Agreement
 
     4.1(a)  Amended and Restated Certificate of Incorporation of the Company, filed December 19, 1995
             (incorporated by reference to Exhibit 3.1(a) to the Company's Quarterly Report on Form 10-Q filed for
             the quarter ended June 30, 1996, Commission File Number 0-27324)
 
     4.1(b)  Certificate of Designations of Series A Junior Participating Preferred Stock filed December 19, 1995
             (incorporated by reference to Exhibit 3.1(b) to the Company's Quarterly Report on Form 10-Q filed for
             the quarter ended December 31, 1995, Commission File Number 0-27324)
 
     4.1(c)  Certificate of Amendment of the Amended and Restated Certificate of Incorporation of the Company,
             filed June 5, 1996 (incorporated by reference to Exhibit 3.1(c) to the Company's Quarterly Report on
             Form 10-Q filed for the quarter ended June 30, 1996, Commission File Number 0-27324)
 
       4.2   Amended and Restated By-Laws of the Company, as amended on June 4, 1996 (incorporated by reference to
             Exhibit 3.2 to the Company's Quarterly Report on Form 10-Q filed for the quarter ended June 30, 1996,
             Commission File Number 0-27324)
 
       4.3   Specimen of Certificate of Common Stock of the Company (incorporated by reference to Exhibit 4 to the
             Company's Registration Statement on Form S-1, as amended (File Number 33-98366), which became
             effective on December 13, 1995)
 
       4.4   Rights Agreement dated as of December 11, 1995, between the Company and Chase Mellon Shareholder
             Services, as Rights Agent (incorporated by reference to Exhibit 4.2 to the Company's Annual Report on
             Form 10-K filed for the fiscal year ended December 31, 1995, Commission File Number 0-27324)
 
        *5   Opinion of Baker & Botts, L.L.P. (including the consent of such firm) regarding legality of
             securities being offered
 
     *23.1   Consent of Baker & Botts, L.L.P. (to be included as part of its opinion to be filed as Exhibit 5
             hereto)
 
      23.2   Consent of Ernst & Young LLP, independent auditors
 
        24   Power of Attorney (included on page II-5)
</TABLE>
 
- ------------------------
 
*   To be filed by amendment.

<PAGE>
                                                                    EXHIBIT 23.2
 
                        CONSENT OF INDEPENDENT AUDITORS
 
    We consent to the reference to our firm under the captions, "Selected
Financial Data" and "Experts" and to the use of our report dated February 18,
1997, included in the Registration Statement (Form S-3) and related Prospectus
of Synaptic Pharmaceutical Corporation for the registration of 2,875,000 shares
of its common stock.
 
    We also consent to the incorporation by reference therein of our report
dated February 18, 1997, with respect to the financial statements of Synaptic
Pharmaceutical Corporation included in its Annual Report (Form 10-K) for the
year ended December 31, 1996, filed with the Securities and Exchange Commission.
 
                                                               ERNST & YOUNG LLP
 
Hackensack, New Jersey
October 6, 1997


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