NPS PHARMACEUTICALS INC
SC 13D/A, 1999-04-28
BIOLOGICAL PRODUCTS, (NO DIAGNOSTIC SUBSTANCES)
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<PAGE>

                                       
                       SECURITIES AND EXCHANGE COMMISSION
                             WASHINGTON, DC  20549

                                   ------------

                                  SCHEDULE 13D
                                 (RULE 13d-101)

        INFORMATION TO BE INCLUDED IN STATEMENTS FILED PURSUANT TO 13d-
             1(a) AND AMENDMENTS THERETO FILED PURSUANT TO 13d-2(a)

                              (AMENDMENT NO. 2)(1)

                           NPS PHARMACEUTICALS, INC.
                           -------------------------
                                (Name of Issuer)

                                  COMMON STOCK
                                  ------------
                         (Title of Class of Securities)

                                  62936P 10 3
                                 --------------
                                 (CUSIP Number)

                                  Hope Flack
                               BVF Partners L.P.
                       227 West Monroe Street, Suite 4800
                            Chicago, Illinois  60606
                                 (312) 263-7777
                 ---------------------------------------------
                 (Name, Address and Telephone Number of Person
                Authorized to Receive Notices and Communications)

                                 April 23, 1999
                                 --------------
            (Date of Event which Requires Filing of this Statement)

     If the filing person has previously filed a statement on Schedule 13G to 
report the acquisition which is the subject of this Schedule 13D, and is 
filing this schedule because of Rule 13d-1(b)(3) or (4), check the following 
box / /.

     NOTE: Six copies of this statement, including all exhibits, should be 
filed with the Commission.  SEE Rule 13d-1(a) for other parties to whom 
copies are to be sent.

                         (Continued on following pages)

- -----------------
(1)  The remainder of this cover page shall be filled out for a reporting 
person's initial filing on this form with respect to the subject class of 
securities, and for any subsequent amendment containing information which 
would alter disclosures provided in a prior cover page.

     The information required on the remainder of this cover page shall not 
be deemed to be "filed" for the purpose of Section 18 of the Securities 
Exchange Act of 1934 or otherwise subject to the liabilities of that section 
of the Act but shall be subject to all other provisions of the Act (however, 
SEE THE NOTES).

<PAGE>

- ---------------------                                        -----------------
CUSIP NO. 62936P 10 3                  13D                   Page 2 of 7 Pages
- ---------------------                                        -----------------

- ------------------------------------------------------------------------------
   1     NAME OF REPORTING PERSONS
         I.R.S. IDENTIFICATION NOS. OF ABOVE PERSONS (ENTITIES ONLY)
              BIOTECHNOLOGY VALUE FUND, L.P.
- ------------------------------------------------------------------------------
   2     CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP*
                                                              (a) /X/  (b) / /
- ------------------------------------------------------------------------------
   3     SEC USE ONLY
- ------------------------------------------------------------------------------
   4     SOURCE OF FUNDS*
              WC
- ------------------------------------------------------------------------------
   5     CHECK BOX IF DISCLOSURE OF LEGAL PROCEEDINGS IS REQUIRED PURSUANT 
         TO ITEMS 2(d) OR 2(e)                                             / /
- ------------------------------------------------------------------------------
   6     CITIZENSHIP OR PLACE OF ORGANIZATION
              DELAWARE
- ------------------------------------------------------------------------------
                     7    SOLE VOTING POWER
                               -0-
    NUMBER OF        ---------------------------------------------------------
      SHARES         8    SHARED VOTING POWER
   BENEFICIALLY                738,288
     OWNED BY        ---------------------------------------------------------
       EACH          9    SOLE DISPOSITIVE POWER
    REPORTING                  -0-
   PERSON WITH       ---------------------------------------------------------
                     10   SHARED DISPOSITIVE POWER
                               738,288
- ------------------------------------------------------------------------------
   11    AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON
              738,288
- ------------------------------------------------------------------------------
   12    CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (11) EXCLUDES
         CERTAIN SHARES*                                                   / /
- ------------------------------------------------------------------------------
   13    PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (11)
              5.8%
- ------------------------------------------------------------------------------
   14    TYPE OF REPORTING PERSON*
              PN
- ------------------------------------------------------------------------------


                     * SEE INSTRUCTIONS BEFORE FILLING OUT!


<PAGE>

- ---------------------                                        -----------------
CUSIP NO. 62936P 10 3                  13D                   Page 3 of 7 Pages
- ---------------------                                        -----------------

- ------------------------------------------------------------------------------
   1     NAME OF REPORTING PERSONS
         I.R.S. IDENTIFICATION NOS. OF ABOVE PERSONS (ENTITIES ONLY)
              BVF PARTNERS L.P.
- ------------------------------------------------------------------------------
   2     CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP*
                                                              (a) /X/  (b) / /
- ------------------------------------------------------------------------------
   3     SEC USE ONLY
- ------------------------------------------------------------------------------
   4     SOURCE OF FUNDS*
              OO
- ------------------------------------------------------------------------------
   5     CHECK BOX IF DISCLOSURE OF LEGAL PROCEEDINGS IS REQUIRED PURSUANT 
         TO ITEMS 2(d) OR 2(e)                                             / /
- ------------------------------------------------------------------------------
   6     CITIZENSHIP OR PLACE OF ORGANIZATION
              DELAWARE
- ------------------------------------------------------------------------------
                     7    SOLE VOTING POWER
                               -0-
    NUMBER OF        ---------------------------------------------------------
      SHARES         8    SHARED VOTING POWER
   BENEFICIALLY                1,393,600
     OWNED BY        ---------------------------------------------------------
       EACH          9    SOLE DISPOSITIVE POWER
    REPORTING                  -0-
   PERSON WITH       ---------------------------------------------------------
                     10   SHARED DISPOSITIVE POWER
                               1,393,600
- ------------------------------------------------------------------------------
   11    AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON
              1,393,600
- ------------------------------------------------------------------------------
   12    CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (11) EXCLUDES
         CERTAIN SHARES*                                                   / /
- ------------------------------------------------------------------------------
   13    PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (11)
              11.0%
- ------------------------------------------------------------------------------
   14    TYPE OF REPORTING PERSON*
              PN
- ------------------------------------------------------------------------------


                     * SEE INSTRUCTIONS BEFORE FILLING OUT!

<PAGE>

- ---------------------                                        -----------------
CUSIP NO. 62936P 10 3                  13D                   Page 4 of 7 Pages
- ---------------------                                        -----------------

- ------------------------------------------------------------------------------
   1     NAME OF REPORTING PERSONS
         I.R.S. IDENTIFICATION NOS. OF ABOVE PERSONS (ENTITIES ONLY)
              BVF INC.
- ------------------------------------------------------------------------------
   2     CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP*
                                                              (a) /X/  (b) / /
- ------------------------------------------------------------------------------
   3     SEC USE ONLY
- ------------------------------------------------------------------------------
   4     SOURCE OF FUNDS*
              WC, OO
- ------------------------------------------------------------------------------
   5     CHECK BOX IF DISCLOSURE OF LEGAL PROCEEDINGS IS REQUIRED PURSUANT 
         TO ITEMS 2(d) OR 2(e)                                             / /
- ------------------------------------------------------------------------------
   6     CITIZENSHIP OR PLACE OF ORGANIZATION
              DELAWARE
- ------------------------------------------------------------------------------
                     7    SOLE VOTING POWER
                               -0-
    NUMBER OF        ---------------------------------------------------------
      SHARES         8    SHARED VOTING POWER
   BENEFICIALLY                1,393,000
     OWNED BY        ---------------------------------------------------------
       EACH          9    SOLE DISPOSITIVE POWER
    REPORTING                  -0-
   PERSON WITH       ---------------------------------------------------------
                     10   SHARED DISPOSITIVE POWER
                               1,393,000
- ------------------------------------------------------------------------------
   11    AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON
              1,393,000
- ------------------------------------------------------------------------------
   12    CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (11) EXCLUDES
         CERTAIN SHARES*                                                   / /
- ------------------------------------------------------------------------------
   13    PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (11)
              11.0%
- ------------------------------------------------------------------------------
   14    TYPE OF REPORTING PERSON*
              IA,CO
- ------------------------------------------------------------------------------


                     * SEE INSTRUCTIONS BEFORE FILLING OUT!

<PAGE>

- ---------------------                                        -----------------
CUSIP NO. 62936P 10 3                  13D                   Page 5 of 7 Pages
- ---------------------                                        -----------------

     This Amendment No. 2 (the "Amendment") to the Statement on Schedule 13D, 
dated September 8, 1998, as amended by Amendment No. 1, dated December 16, 
1998 (as so amended, the "Statement"), is filed with the Securities and 
Exchange Commission on behalf of Biotechnology Value Fund, L.P., a Delaware 
limited partnership ("BVF"), BVF Partners L.P., a Delaware limited 
partnership ("Partners"), and BVF Inc., a Delaware corporation ("BVF Inc." 
and, together with BVF and Partners, the "Reporting Persons") with respect to 
the Common Stock, par value $0.001 (the "Stock"), of NPS Pharmaceuticals, 
Inc., a Delaware corporation ("NPS").

Item 3 is hereby amended to read in its entirety as follows:

ITEM 3.   SOURCE AND AMOUNT OF FUNDS OR OTHER CONSIDERATION.

     Since February 22, 1999, Partners, in its capacity as general partner of 
BVF, has sold on behalf of such limited partnership an aggregate number of 
340,000 shares of the Stock for an aggregate consideration of $2,294,923.50.  
In addition, Partners, in its capacity as investment manager with respect to 
certain managed accounts, has sold on behalf of such managed accounts an 
aggregate number of 320,000 shares of the Stock for an aggregate 
consideration of $2,159,928.00.  The managed accounts on whose behalf 
Partners owns shares of the Stock are Investment 10 L.L.C., an Illinois 
limited liability company ("ILL10") and Biotechnology Value Fund, Ltd., a 
Cayman Islands Corporation ("BVF Ltd.").  ILL10 and BVF Ltd. are collectively 
referred to herein as the "Accounts."  The Accounts specialize in holding 
biotechnology stocks for investment purposes and the business address of each 
is BVF Partners L.P., 227 West Monroe Street, Suite 4800, Chicago, Illinois 
60606.

Item 5 is hereby amended to read in its entirety as follows:

ITEM 5.   INTEREST IN SECURITIES OF THE ISSUER.

     (a)  BVF beneficially owns 738,288 shares of the Stock, Partners 
beneficially owns 1,393,600 shares of the Stock, and BVF Inc. beneficially 
owns 1,393,600 shares of the Stock, approximately 5.8%, 11.0% and 11.0%, 
respectively, of the aggregate number of shares outstanding as of March 1, 
1999 (as reported in NPS's most recent annual statement on Form 10-K).

     (b)   BVF shares voting and dispositive power over the 738,288 shares of 
the Stock it beneficially owns with Partners.  Partners and BVF Inc. share 
voting and dispositive power over the 1,393,600 shares of the Stock they 
beneficially own with, in addition to BVF, the managed accounts on whose 
behalf Partners, as investment manager, purchased such shares.  

     (c)  Exhibit B attached hereto contains information as to all 
transactions in the Stock by the Reporting Persons in the last sixty (60) 
days.  All such transactions were made for cash in open market, 
over-the-counter transactions.  Except as provided below, no other 
transactions 


<PAGE>

- ---------------------                                        -----------------
CUSIP NO. 62936P 10 3                  13D                   Page 6 of 7 Pages
- ---------------------                                        -----------------


in the Stock have been effected by the Reporting Persons during the last 
sixty 60 days.   On March 31, 1999, Partners transferred 36,000 shares of 
Stock that it owned on behalf of ZPG Securities, L.L.C., a New York limited 
liability company ("ZPG") to BVF, and transferred 29,500 shares of Stock that 
it owned on behalf of ZPG to BVF, Ltd. Pursuant to these transfers, Partners 
no longer owns any shares of Stock on behalf of ZPG.  The aggregate number of 
shares of the Stock beneficially owned by Partners and BVF Inc. was not 
affected by these transfers.

     (d)  The Accounts are entitled to receive dividends and any sale 
proceeds with respect to the Stock in proportion to their respective 
ownership interests therein.

Item 7 is hereby amended to read in its entirety as follows:

ITEM 7.   MATERIAL TO BE FILED AS EXHIBITS.

     Exhibit A - Agreement Regarding Joint Filing

     Exhibit B - Transactions in the Stock by the Reporting Persons during the
past sixty (60) days.


<PAGE>

- ---------------------                                        -----------------
CUSIP NO. 62936P 10 3                  13D                   Page 7 of 7 Pages
- ---------------------                                        -----------------

     After reasonable inquiry and to the best of my knowledge and belief, I 
certify that the information set forth in this statement is true, complete 
and correct.

Dated:  April 27, 1999

     BIOTECHNOLOGY VALUE FUND, L.P.

     By:  BVF Partners L.P., its general partner

          By:  BVF Inc., its general partner

               By:  /s/ Mark N. Lampert
                    -------------------
                    Mark N. Lampert
                    President

     BVF PARTNERS L.P.

     By:  BVF Inc., its general partner

          By:  /s/ Mark N. Lampert
               -------------------
               Mark N. Lampert
               President

     BVF INC.


     By:  /s/ Mark N. Lampert
          -------------------
          Mark N. Lampert
          President


<PAGE>

                                   EXHIBIT A

                        AGREEMENT REGARDING JOINT FILING

     The undersigned, Biotechnology Value Fund, L.P., a Delaware limited 
partnership, and BVF Partners L.P., a Delaware limited partnership, and BVF 
Inc., a Delaware corporation, hereby agree and acknowledge that the Amendment 
containing the information required by Schedule 13D, to which this Agreement 
is attached as an exhibit, is filed on behalf of each of them.  The 
undersigned further agree that any further amendments or supplements thereto 
shall also be filed on behalf of each of them.

Dated:  April 27, 1999

     BIOTECHNOLOGY VALUE FUND, L.P.

     By:  BVF Partners L.P., its general partner

          By:  BVF Inc., its general partner

               By:  /s/ Mark N. Lampert
                    -------------------
                    Mark N. Lampert
                    President

     BVF PARTNERS L.P.

     By:  BVF Inc., its general partner

          By:  /s/ Mark N. Lampert
               -------------------
               Mark N. Lampert
               President

     BVF INC.


     By:  /s/ Mark N. Lampert
          -------------------
          Mark N. Lampert
          President


<PAGE>

                                   EXHIBIT B

               TRANSACTIONS IN THE STOCK BY THE REPORTING PERSONS
                           DURING THE PAST SIXTY DAYS


<TABLE>
<CAPTION>
- ------------------------------------------------------------------------------------------
                           FOR THE                    PRICE PER
TRADE DATE     BY         ACCOUNT OF      QUANTITY      SHARE      TYPE OF TRADE    BROKER
- ------------------------------------------------------------------------------------------
<S>          <C>          <C>             <C>         <C>          <C>              <C>
 04/23/99    BVF          Partners        (340,000)    $6.7500     Sale             VECT
- ------------------------------------------------------------------------------------------
 04/23/99    BVF Ltd.     Partners        (320,000)    $6.7500     Sale             VECT
- ------------------------------------------------------------------------------------------
</TABLE>
     
          VECT      =    Vector Securities


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