RIBOZYME PHARMACEUTICALS INC
S-1, 1999-03-26
PHARMACEUTICAL PREPARATIONS
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<PAGE>
 
    As filed with the Securities and Exchange Commission on March 26, 1999.
                                                     Registration No. 333-
- -------------------------------------------------------------------------------
- -------------------------------------------------------------------------------
 
                      SECURITIES AND EXCHANGE COMMISSION
                            Washington, D.C. 20549
 
                               ----------------
 
                                   FORM S-1
                            REGISTRATION STATEMENT
                                     UNDER
                          THE SECURITIES ACT OF 1933
                               ----------------
                        Ribozyme Pharmaceuticals, Inc.
            (Exact name of registrant as specified in its charter)
 
        Delaware                     2834                    34-1697351
                               (Primary Standard          (I.R.S. Employer
     (State or other       IndustrialClassification    Identification Number)
     jurisdiction of             Code Number)
    incorporation or
      organization)
 
                             2950 Wilderness Place
                            Boulder, Colorado 80301
                                (303) 449-6500
  (Address, including zip code, and telephone number, including area code, of
                   Registrant's principal executive offices)
                               ----------------
                            RALPH E. CHRISTOFFERSEN
                        Ribozyme Pharmaceuticals, Inc.
                     Chief Executive Officer and President
                             2950 Wilderness Place
                            Boulder, Colorado 80301
                                (303) 449-6500
(Name, address, including zip code, and telephone number, including area code,
                             of agent for service)
                               ----------------
                                    Copies:
         HERBERT H. DAVIS III                    JAMES R. TANENBAUM
    ROTHGERBER JOHNSON & LYONS LLP          STROOCK & STROOCK & LAVAN LLP
     1200 17th Street, Suite 3000                  180 Maiden Lane
        Denver, Colorado 80202                New York, New York 10038
            (303) 623-9000                         (212) 806-6048
                               ----------------
  Approximate date of commencement of proposed sale to the public: As soon as
practicable after the Registration Statement becomes effective.
                               ----------------
 
  If any of the securities being registered on this Form are to be offered on
a delayed or continuous basis pursuant to Rule 415 under the Securities Act of
1933, check the following box: [_]
  If this Form is filed to register additional securities for an offering
pursuant to Rule 462(b) under the Securities Act, please check the following
box and list the Securities Act registration statement number of the earlier
effective registration statement for the same offering: [_]
  If this Form is a post-effective amendment filed pursuant to Rule 462(c)
under the Securities Act, check the following box and list the Securities Act
registration statement number of the earlier effective registration statement
for the same offering: [_]
  If this Form is a post-effective amendment filed pursuant to Rule 462(d)
under the Securities Act, check the following box and list the Securities Act
registration statement number of the earlier effective registration statement
for the same offering: [_]
  If delivery of the prospectus is expected to be made pursuant to Rule 434,
please check the following box: [_]
                        CALCULATION OF REGISTRATION FEE
- -------------------------------------------------------------------------------
- -------------------------------------------------------------------------------
<TABLE>
<CAPTION>
                                                       Proposed
                                         Amount        Maximum     Proposed Maximum    Amount of
        Title of Shares                  to be      Offering Price     Aggregate      Registration
        to be Registered               Registered    Per Share(1)  Offering Price(1)      Fee
- --------------------------------------------------------------------------------------------------
<S>                                  <C>            <C>            <C>               <C>
Common                                 1,800,000
 Stock, $0.01 par value per share..      Shares         $5.00         $9,000,000       $2,655.00
</TABLE>
 
- -------------------------------------------------------------------------------
- -------------------------------------------------------------------------------
(1) Estimated solely for the purpose of calculating the registration fee in
    accordance with Rule 457(c) under the Securities Act of 1933.
                               ----------------
  The Registrant hereby amends this Registration Statement on such date or
dates as may be necessary to delay its effective date until the Registrant
shall file a further amendment which specifically states that this
Registration Statement shall thereafter become effective in accordance with
Section 8(a) of the Securities Act of 1933 or until the Registration Statement
shall become effective on such date as the SEC, acting pursuant to said
Section 8(a), may determine.
 
- -------------------------------------------------------------------------------
- -------------------------------------------------------------------------------
<PAGE>
 
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+The information in this prospectus is not complete and may be changed. We may +
+not sell these securities until the registration statement filed with the     +
+Securities and Exchange Commission is effective. This prospectus is not an    +
+offer to sell these securities and is not soliciting an offer to buy these    +
+securities in any state where the offer or sale is not permitted.             +
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
                  SUBJECT TO COMPLETION, DATED MARCH 26, 1999
PROSPECTUS
 
                                1,800,000 Shares
 
                         Ribozyme Pharmaceuticals, Inc.
 
 
                                  Common Stock
 
                                 -------------
 
  Ribozyme Pharmaceuticals, Inc. is offering and selling 1,800,000 shares of
common stock with this prospectus. Ribozyme Pharmaceuticals' common stock is
quoted on the Nasdaq National Market under the symbol "RZYM." On March 24,
1999, the last reported sale price of the common stock on the Nasdaq National
Market was $5.00 per share. See "Price Range of Common Stock."
 
<TABLE>
<CAPTION>
                                                                 Per Share Total
                                                                 --------- -----
<S>                                                              <C>       <C>
Public Offering Price...........................................   $
Placement Agency Fees...........................................   $
Proceeds to Ribozyme Pharmaceuticals............................   $
</TABLE>
 
  Hambrecht & Quist LLC will act as the placement agent in connection with the
offering and will use its best efforts to introduce Ribozyme Pharmaceuticals to
investors. Ribozyme Pharmaceuticals is offering the shares on an all or none
basis only to selected institutional and accredited investors. Hambrecht &
Quist LLC has no commitment to buy any of the shares offered. All investor
funds received prior to the closing of the offering will be deposited into
escrow with an escrow agent until closing. If Ribozyme Pharmaceuticals does not
receive investor funds for the full amount of the offering, the offering will
be terminated and any funds received will be returned promptly.
 
                                 -------------
 
         Investing in the common stock involves a high degree of risk.
                    See "Risk Factors" beginning on page 5.
 
                                 -------------
 
  Neither the Securities and Exchange Commission nor any state securities
commission has approved or disapproved these securities, or passed upon the
adequacy or accuracy of this prospectus. Any representation to the contrary is
a criminal offense.
 
Prospectus dated March 26, 1999
<PAGE>
 
                               TABLE OF CONTENTS
 
<TABLE>
<CAPTION>
                                                                            Page
                                                                            ----
      <S>                                                                   <C>
      Prospectus Summary...................................................   1
      Risk Factors.........................................................   5
      Use of Proceeds......................................................  14
      Price Range of Common Stock..........................................  15
      Dividend Policy......................................................  15
      Capitalization.......................................................  16
      Dilution.............................................................  17
      Selected Financial Data..............................................  18
      Management's Discussion and Analysis of
       Financial Condition and Results of Operations.......................  19
      Business.............................................................  24
      Management...........................................................  40
      Certain Transactions.................................................  50
      Principal Stockholders...............................................  52
      Description of Capital Stock.........................................  54
      Plan of Distribution.................................................  57
      Legal Matters........................................................  57
      Experts..............................................................  58
      Additional Information...............................................  58
</TABLE>
 
                                       i
<PAGE>
 
                               PROSPECTUS SUMMARY
 
  This summary highlights selected information contained elsewhere in this
prospectus. This summary does not contain all of the information that you
should consider before investing in our common stock. You should read the
entire prospectus carefully, including "Risk Factors" and the financial
statements, before making an investment decision.
 
                         Ribozyme Pharmaceuticals, Inc.
 
Business
 
  Ribozyme Pharmaceuticals is developing a new class of drugs based on
Professor Thomas R. Cech's discovery of "ribozymes," for which he shared a
Nobel Prize. Ribozymes, a form of ribonucleic acid ("RNA"), have the ability to
selectively inhibit protein production. Because many human disease states
result from abnormal protein production, we believe that ribozymes apply to a
wide range of human diseases. We are currently conducting preclinical
development and clinical trials for our two lead product candidates, ANGIOZYME
and HEPTAZYME. We are collaborating with Chiron Corporation ("Chiron") in the
development and commercialization of ANGIOZYME, a drug for the treatment of
solid tumor cancers. We have completed Phase Ia clinical trials in healthy
volunteers, will commence Phase Ib trials in cancer patients in the first
quarter of 1999 and expect to begin Phase II trials by the end of the year. We
are collaborating with Eli Lilly and Company ("Lilly") for the development and
commercialization of HEPTAZYME, a drug for the treatment of Hepatitis C, a
viral liver disease. HEPTAZYME is in preclinical testing, and we expect to file
an investigational new drug application before the end of the year. We are also
researching several other product candidates and expect to begin preclinical
testing on one of these product candidates by the end of 1999.
 
  Ribozymes also may be used for gene function identification and target
validation, the process by which genes that cause or contribute to human
disease are identified. We have target validation and discovery partnerships
with Schering AG, Roche Biosciences, GlaxoWellcome, Chiron and Parke-Davis. In
1998, we transferred our gene function identification and target validation
technology to a newly formed German company, Atugen Biotechnology GmbH
("Atugen"). Upon its formation, Atugen received over $20 million in multi-year
funding from a combination of venture capital, an investment by us and German
government grants and loans. Pursuant to this technology transfer, we acquired
a substantial equity interest in Atugen while retaining our rights to develop
ribozymes as therapeutics. As a result of this technology transfer, we will
focus exclusively on the development of ribozymes as human therapeutics and
will subcontract target validation and discovery services to Atugen.
 
The Market Opportunity
 
  Our two lead product candidates, ANGIOZYME and HEPTAZYME, are therapeutics
for large markets. ANGIOZYME is a drug which targets solid tumor cancers, such
as cancers of the lung, breast, prostate, colon and rectum. These cancers
account for over 750,000 new cancer cases and 200,000 deaths per year in the
United States alone. HEPTAZYME targets the Hepatitis C virus ("HCV"), the most
common blood-borne infection in the United States. Each year in the United
States, HCV infects approximately 50,000 people and causes 10,000 deaths.
Existing therapies are ineffective in over 50% of Hepatitis C patients and have
serious side effects.
 
The Ribozyme Advantage
 
  We believe ribozymes offer significant advantages over other approaches to
treating human disease. Ribozymes can selectively inhibit protein production by
binding to and cutting apart its associated messenger RNA ("mRNA") sequence.
Many common human diseases involve either abnormal protein production or RNA
viruses. Ribozymes can be used to treat human disease in two ways. First,
ribozymes can be designed
 
                                       1
<PAGE>
 
to inhibit abnormal protein production associated with a disease. Second,
ribozymes can be designed to target RNA viruses or protein production in other
infectious agents that cause disease. Ribozymes also are useful in identifying
the function of specific genes (validating targets) and in diagnosing disease.
 
Strategy
 
  Our primary business objective is to use our technology to identify and
develop drugs containing ribozymes to treat or prevent human disease. Our
strategy to achieve this objective includes the following:
 
  . develop identified product candidates,
 
  . identify new product candidates,
 
  . partner with others to develop products,
 
  . focus on human therapeutics and license other applications of our
    technology, and
 
  . maintain and expand our patent portfolio and proprietary technology.
 
Patents
 
  Our patents and proprietary technology provide a significant competitive
advantage in the use of ribozymes in drug development. Our licenses to patents
of Dr. Cech and others, together with patents issued to and filed by us, give
us the exclusive rights to control the manufacture, use and sale of ribozymes.
Our current patent portfolio includes 84 issued or allowed patents and over 100
applications.
 
  Our corporate headquarters are located at 2950 Wilderness Place, Boulder,
Colorado 80301, and our telephone number is (303) 449-6500. Our web site
address is www.rpi.com. Information contained on our website does not
constitute part of this prospectus.
 
                                       2
<PAGE>
 
                                  The Offering
 
<TABLE>
 <C>                                                 <S>
 Common stock offered............................... 1,800,000 shares
 
 Common stock to be outstanding after the offering.. 10,982,135 shares
 
 Use of proceeds.................................... To fund preclinical and
                                                     clinical trials of our
                                                     products, continued
                                                     research and development,
                                                     and for general corporate
                                                     purposes
 
 Nasdaq National Market symbol...................... RZYM
</TABLE>
- --------
  This information is based on the number of shares outstanding at March 15,
1999. It excludes:
 
  . 1,478,493 shares reserved for issuance under our stock option plan, of
    which 1,386,487 shares were outstanding at a weighted average exercise
    price of $4.18 per share.
 
  . 487,458 shares issuable upon the exercise of outstanding warrants at a
    weighted average exercise price of $22.76 per share.
 
  . 1,100,844 shares issuable to one of our collaborators upon conversion of
    outstanding debt, assuming a conversion price of $4.88 per share, which
    was the closing price of our common stock on March 15, 1999.
 
  . 200,168 shares available for issuance under our Employee Stock Purchase
    Plan.
 
                                       3
<PAGE>
 
                             Summary Financial Data
 
  The selected historical financial data presented below is derived from the
financial statements of Ribozyme Pharmaceuticals. The financial statements for
each of the five years ended December 31, 1994, 1995, 1996, 1997 and 1998 have
been audited by Ernst & Young LLP, independent auditors. The as adjusted
balance sheet data summarized below reflects the application of the net
proceeds from the sale of the 1,800,000 shares of common stock offered by
Ribozyme Pharmaceuticals at the assumed offering price of $5.00 after deducting
estimated placement agency fees and offering expenses. You should read this
information together with the more detailed information presented in "Selected
Financial Data," "Management's Discussion and Analysis of Financial Condition
and Results of Operations" and our audited financial statements and related
notes.
 
<TABLE>
<CAPTION>
                                      Year Ended December 31,
                          ----------------------------------------------------
                            1994      1995       1996       1997       1998
                          --------  ---------  ---------  ---------  ---------
                              (in thousands except per share amounts)
<S>                       <C>       <C>        <C>        <C>        <C>
Statement of Operations
 Data:
  Total revenues......... $  1,587  $   1,675  $   1,709  $   2,778  $   9,622
  Expenses:
    Research and
     development.........    9,212     12,204     14,189     15,170     16,941
    General and
     administrative......    1,291      1,397      1,943      1,886      1,813
    Interest expense.....      334        554        845        844        704
                          --------  ---------  ---------  ---------  ---------
      Total expenses.....   10,837     14,155     16,977     17,900     19,458
  Equity in loss of
   unconsolidated
   affiliate.............       --         --         --         --      1,082
                          --------  ---------  ---------  ---------  ---------
  Net loss............... $ (9,250) $ (12,480) $ (15,268) $ (15,122) $ (10,918)
                          ========  =========  =========  =========  =========
  Net loss per share
   (basic and diluted)
   ......................    (3.52)     (3.86)     (2.61)     (2.04)     (1.22)
  Shares used in
   computing net loss per
   share (basic and
   diluted)..............    2,627      3,230      5,845      7,420      8,978
</TABLE>
 
<TABLE>
<CAPTION>
                                                            December 31, 1998
                                                           --------------------
                                                           Actual   As Adjusted
                                                           -------  -----------
<S>                                                        <C>      <C>
Balance Sheet Data:
  Cash, cash equivalents and securities available-for-
   sale................................................... $ 6,512     14,612
  Working capital.........................................   4,467     12,567
  Total assets............................................  19,224     27,324
  Capital lease obligations and long-term debt, net of
   current portion........................................   4,545      4,545
  Accumulated deficit..................................... (73,422)   (73,422)
  Total stockholders' equity..............................  11,034     19,134
</TABLE>
 
                                       4
<PAGE>
 
                                  RISK FACTORS
 
  You should carefully consider the following risk factors and all other
information contained in this prospectus before purchasing our common stock.
Investing in our common stock involves a high degree of risk. Any of the
following risks could materially adversely affect our business, operating
results and financial condition and could result in a complete loss of your
investment.
 
We are in an early stage of development and have a limited operating history
 
  We are a development stage biotechnology company. We have focused our
research and development efforts on potential products and services based on
ribozyme technology. We formed our company in 1992 and have only a limited
operating history for you to review in evaluating our business. All of our
products are in early stages of development, have never generated any sales and
require extensive testing before commercialization. An investor in our common
stock must consider the risks frequently encountered by early stage companies
in the biotechnology industry. These risks include our ability to:
 
  . obtain the financial resources necessary to develop, test, manufacture
    and market products,
 
  . engage corporate partners to assist in developing, testing, manufacturing
    and marketing our products,
 
  . satisfy the requirements of clinical trial protocols, including patient
    enrollment,
 
  . establish and demonstrate the clinical efficacy of our products,
 
  . obtain necessary regulatory approvals, and
 
  . market our products to achieve acceptance and use by the medical
    community in general.
 
We have a history of losses and expect future losses
 
  We have not yet generated any revenues from the commercial sale of our
products and cannot assure you that we will ever generate revenues from product
sales. To date, we have dedicated most of our financial resources to research
and development and general and administrative expenses.
 
  We have incurred significant losses and have had negative cash flows from
operations since inception. We have funded our activities primarily from sales
of stock, revenues under research and development agreements and lines of
credit. As of December 31, 1998, our accumulated deficit was $73.4 million.
 
  We expect to incur operating losses for at least the next several years
because we plan to spend substantial amounts on research and development of
products, including preclinical studies and clinical trials, and, if we obtain
necessary regulatory approvals, on sales and marketing efforts. We cannot
assure you that we will ever become profitable or that we will remain
profitable, if and when we become profitable.
 
We depend upon our collaborative relationships and these third parties may not
continue to work with us
 
  Engaging corporate partners and other third parties to help us develop, test
and manufacture our products is a key element of our strategy. As a result,
many important aspects of our business depend upon the activities of these
partners, including Chiron, Lilly and Schering AG, which may be outside of our
control. These factors include:
 
  . extension, renewal or termination of collaborative relationships by
    partners,
 
  . payments based upon our company meeting performance milestones,
 
  . development by partners of technologies that compete with those being
    developed with us, which would result in a potential loss of revenue for
    us,
 
  . decision to develop or market any products with us,
 
  . withdrawal of resources for our products,
 
                                       5
<PAGE>
 
  . termination at will under existing agreements,
 
  . loss of royalty payments and licensing rights to jointly developed
    products if we are unwilling or unable to fund our share of development
    costs.
 
  . relinquish some or all of our rights to our products, and
 
  . negotiation of additional collaborative agreements with partners.
 
  Should our corporate partners, Chiron or Lilly, elect not to proceed with
development of our two leading products, it may have a significant adverse
affect on our operating results and the price of our common stock. Both Chiron
and Lilly may unilaterally terminate their agreements with us. If other
corporate partners with whom we have entered into collaborative agreements
elect not to continue with our collaborations, it may have a significant
adverse affect on our operating results and the price of our common stock.
 
We may not be successful in developing our products
 
  All of our products are in an early stage of development and will require
expensive and lengthy testing and regulatory clearances. None of our products
has received necessary regulatory approvals. None of our products has entered
clinical trials for efficacy and our most advanced product candidate,
ANGIOZYME, has just completed Phase Ia trials. We may experience delays in
clinical development if we cannot enroll a sufficient number of patients for
our clinical trials. We do not expect any of our products to be commercially
available for at least five years. The success of our business depends upon our
ability to develop and market successfully our products, if and when they
become commercially available. There are many reasons that we may fail in our
efforts to develop our products, including the possibility that:
 
  . our products will not be safe and/or effective, and therefore will not
    receive regulatory approval,
 
  . our products will be too expensive to manufacture or market,
 
  . our products will not receive broad market acceptance,
 
  . other parties will hold proprietary rights that prevent us from marketing
    our products, and
 
  . other parties will market similar or superior products with greater
    market acceptance.
 
The grant by us to our collaborators of exclusive rights to products against
specified gene sequences could delay development of those products
 
  We have granted exclusive rights to our collaborators to products targeting
specific gene sequences. Many of these rights will revert to us if the product
is not being actively developed by our collaborator, which could have the
effect of slowing development of the product. However, some of our
collaborators have the right to reserve exclusive rights to specified products
for a period of time, even if they are not developing a product. Also, many of
our collaboration agreements require us to offer our collaborators a right of
first offer as to certain targets and products. Such requirements may slow our
development process and may prevent us from entering into other collaborative
agreements.
 
  Under our product development collaboration with Chiron, Chiron has the
exclusive right to develop products against up to five targets designated by it
for the term of Chiron's collaboration with us, which could exceed 30 years. In
addition, Chiron may at any time reserve for 18 months the exclusive rights to
additional targets, not to exceed four. Under our gene function and target
validation agreement, Chiron may reserve the exclusive right to products
against additional targets for up to two and a half years.
 
  Under our collaboration with Schering AG, Schering AG may reserve
indefinitely the exclusive right to products against targets designated by it.
Under our collaboration with Roche, Roche can reserve products against a
specified number of diseases for up to three years. Under our collaborations,
up to approximately 50 targets may be reserved at any time. Development of the
products subject to these exclusivity provisions
 
                                       6
<PAGE>
 
is out of our control. Development may be delayed, and these products will not
be available to us during the exclusivity term either to develop internally or
in collaboration with third parties.
 
THERE IS UNCERTAINTY AS TO THE AVAILABILITY OF ADDITIONAL FINANCING
 
  We anticipate that the net proceeds of this offering, together with our
existing financial resources and expected revenues from our collaborations,
should be sufficient to meet our capital and operating requirements into mid-
2001. We will need to raise substantial additional capital to fund our
operations. However, changes in research and development plans or changes in
our collaborative relationships may require us to make additional, unexpected
large future expenditures and may significantly reduce our expected revenues
from our collaborations. Additional funding may be available in the public or
private capital markets and through collaboration agreements with partners upon
achievement of performance milestones. If we raise funds by selling more stock,
your ownership share in us will be diluted. In addition, we may grant future
investors rights superior to those of the common stock that you are purchasing.
We do not know if additional funding will be available at all or on acceptable
terms when needed. If the results of our clinical trials are not favorable, it
will be much more difficult for us to raise additional funds. If we are unable
to obtain funding, we may need to curtail some or all research and development
programs, to obtain funds through arrangements that require us to relinquish
rights to some or all of our products or to declare bankruptcy.
 
ATUGEN IS A NEWLY FORMED COMPANY AND WILL REQUIRE CONSIDERABLE TIME AND
ATTENTION FROM OUR MANAGEMENT TEAM; WE MAY NOT EXERCISE CONTROL OVER ATUGEN'S
MANAGEMENT
 
  Atugen is a new company without a permanent CEO, a permanent CFO, or its own
business development team. Pursuant to the terms of a service agreement between
Atugen and us, Atugen has access to our management, including our business
development team, for a limited time. There is no assurance that Atugen will be
able to hire the management and business development professionals needed for
its success. Therefore, our management may need to continue to dedicate time
and resources to both the management and business development of Atugen which
may detract from management's attention to our business. In addition, while we
have the right to appoint two designees to Atugen's Board of Directors, we do
not exercise control over Atugen's business and operations.
 
CLINICAL TRIAL RESULTS MAY RESULT IN DELAYS OR FAILURE TO OBTAIN FDA APPROVAL
AND INABILITY TO SELL OUR PRODUCTS
 
  Before approving a drug for commercial sale as a treatment for a disease, the
FDA and other regulatory authorities require that the safety and effectiveness
of the drug be demonstrated in humans. This is demonstrated by showing results
from adequate and well-controlled clinical trials in which the drug is used to
treat patients suffering from the disease. The clinical trial process is
complex and uncertain. Positive results from preclinical testing and early
clinical trials do not ensure positive results in later clinical trials. Our
products may produce undesirable side effects in humans which could cause us,
our collaborative partners or the FDA to delay or halt clinical trials of that
product. We cannot predict when or whether our clinical trials will adequately
demonstrate a product's safety and effectiveness or whether the FDA or other
regulatory authority will agree with the sufficiency of the trial results. If
our clinical trials do not demonstrate the safety or effectiveness of our
products, or if we otherwise fail to obtain regulatory approval for our
products, we will not be able to generate revenues from the commercial sale of
our products.
 
THE FDA CAN IMPOSE OTHER RESTRICTIONS ON OUR OPERATIONS THAT INCREASE COSTS OR
DELAY OR PROHIBIT SALES
 
  The FDA and other regulatory authorities will continue to review our products
and periodically inspect the facilities used to manufacture those products both
before and after granting regulatory approvals. If the
 
                                       7
<PAGE>
 
FDA or other regulatory authorities identify problems with a product, the
manufacturer or its facility, they may impose restrictions that may include:
 
  . warning letters,
 
  . operating restrictions,
 
  . suspensions of regulatory approvals,
 
  . delays in obtaining new product approvals,
 
  . withdrawal of the product from the market,
 
  . product recalls,
 
  . seizure of products,
 
  . fines,
 
  . injunctions, and
 
  . criminal prosecution.
 
  These actions could significantly delay or prevent the marketing of our
products.
 
Our products must obtain regulatory approval in other countries which could
delay or prohibit sales in those countries
 
  The Company and licensees of our products must obtain regulatory approvals in
countries other than the United States before marketing products in those
countries. The requirements governing the conduct of clinical trials, product
licensing and pricing of drugs vary widely from country to country. Some
countries require approval of the sale price of a drug before it can be
marketed. In many countries, the pricing review period begins after product
licensing approval is granted. As a result, we or our licensees may obtain
regulatory approval for a product in a particular country, but be subject to
price regulation which may prevent the sale of the product at satisfactory
prices.
 
Our products require materials that may not be readily available or cost
effective, which may adversely affect our competitive position or profitability
 
  All of the products we are developing are new chemical entities and are not
yet available in commercial quantities. Raw materials necessary for the
manufacture of our products may not be available in sufficient quantities or at
a reasonable cost in the future. Therefore, our products may not be available
at a reasonable cost in the future. Delays in obtaining raw materials or in
product manufacturing could delay our submission of products for regulatory
approval and our initiation of new development programs, which could, in turn,
materially impair our competitive position and potential profitability.
 
We experience a substantial degree of uncertainty relating to patents that
could result in the loss of patent protection or in claims against us
 
  Our success will depend to a large extent on our ability and our licensors'
abilities to:
 
  . obtain and maintain United States and foreign patent protection for
    products and processes,
 
  . preserve trade secrets, and
 
  . operate without infringing the proprietary rights of third parties.
 
  Legal standards relating to the validity of patents covering pharmaceutical
and biotechnological inventions and the scope of claims made under these
patents are still developing. As a result, our ability to obtain and enforce
patents that protect our products is uncertain and involves complex legal and
factual questions. Our basic patents expire in 2008 in the United States and in
2007 in Europe and Japan; however, although our license to these patents
extends through 2007 or 2008, our licensor preserves the right to
 
                                       8
<PAGE>
 
terminate our license before such time under certain circumstances. We have
received approval of some patent applications for improvements and
modifications to these patents and we have filed patent applications for other
improvements and modifications which have not yet been approved.
 
  We cannot be certain that the inventors of subject matter covered by our
patents and patent applications were the first to invent or the first to file
patent applications for these inventions. Furthermore, we cannot guarantee that
any patents will issue from any pending or future patent applications owned by
or licensed to us. Existing or future patents may be successfully challenged,
invalidated, found to be unenforceable, infringed upon, or circumvented by
others so that our patent rights would not create an effective competitive
barrier. We also cannot assure you that the scope of our issued patents will be
sufficiently broad to offer meaningful protection against competitive products.
We have filed documents in opposition of two patents granted to a competitor in
Europe. Competitors have filed documents in opposition of our patents in Europe
and Japan. The patent opposition in Japan has been resolved in our favor. We
may not have identified all United States and foreign patents that pose a risk
of infringement.
 
We may incur substantial costs and delays as a result of proceedings and
litigation regarding patents and other proprietary rights
 
  Litigation regarding patents and other intellectual property rights is
extensive in the biotechnology industry. Patents have been applied for and, in
some cases, issued to others claiming technologies closely related to ours. As
a result, and in part due to the ambiguities and evolving nature of
intellectual property law, we periodically receive notices of potential
infringement of patents held by others. Although we have successfully resolved
these types of claims to date, we may not be able to do so in the future.
 
  We may be forced to litigate if an intellectual property dispute arises. Such
litigation could involve proceedings declared by the United States Patent and
Trademark Office or the International Trade Commission, as well as affected
third parties. Intellectual property litigation can be extremely expensive, and
such expense, as well as the consequences should we not prevail, could
seriously harm our business.
 
  Proceedings and litigation involving our patents or patent applications could
result in adverse findings about:
 
  . the patentability of our inventions and products, and/or
 
  . the enforceability, validity or scope of protection offered by our
    patents.
 
  The manufacture, use or sale of our products may infringe on the patent
rights of others. If we are unable to avoid infringing another party's patent
rights, we may be required to seek a license, defend an infringement action or
challenge the validity of the patents in court. Patent litigation is costly and
time consuming. We may not have sufficient resources to bring these actions to
a successful conclusion. In addition, if we do not obtain a license, do not
successfully defend an infringement action or are unable to have infringing
patents declared invalid, we may:
 
  . incur substantial monetary damages,
 
  . encounter significant delays in marketing our products, and
 
  . be unable to participate in the manufacture, use or sale of products or
    methods of treatment requiring licenses.
 
  In addition, we regularly enter into agreements to in-license technologies
and patent rights. Should we fail to comply with the terms of those agreements,
including payment of any required maintenance fees or royalties, we would lose
the rights to those technologies and patents.
 
Disclosure of our trade secrets could aid competitors
 
  Because trade secrets and other unpatented proprietary information are
critical to our business, we attempt to protect our trade secrets by entering
into confidentiality agreements with third parties, employees
 
                                       9
<PAGE>
 
and consultants. However, these agreements can be breached and, if they are,
there may not be an adequate remedy available to us. In addition, third parties
may independently discover trade secrets and proprietary information. If our
trade secrets become known, our competitive position may suffer. Costly and
time-consuming litigation could be necessary to enforce and determine the scope
of our proprietary rights.
 
Our executive officers, key personnel and advisors are critical to our business
and they may not remain with us in the future
 
  Our future success depends to a significant extent on the skills, experience
and efforts of our management and scientific team. In addition, we rely on
consultants and advisors, including the members of our scientific advisory
board, to formulate research and development strategy. The loss of any or all
of these individuals could damage our business.
 
We may not be able to recruit and retain the personnel that we need to succeed
 
  Our products and services are highly technical in nature. In general, only
highly qualified and trained scientists have the necessary skills to develop
and market our products and provide our services. We face intense competition
in recruiting these professionals from pharmaceutical and biotechnology
companies, universities and other research institutions. Any failure on our
part to hire, train and retain a sufficient number of qualified professionals
would seriously damage our business. We do not generally enter into employment
agreements requiring scientific employees to continue in our employment for any
period of time.
 
We may not be able to keep up with the rapid technological change in the
biotechnology and pharmaceutical industries, which could obsolete our products
 
  Biotechnology and related pharmaceutical technologies have undergone and
continue to undergo rapid and significant change. We expect that the
technologies associated with biotechnology research and development will
continue to develop rapidly. Our future will depend in large part on our
ability to maintain a competitive position with respect to these technologies.
Any compounds, products or processes that we develop may become obsolete before
we recover expenses incurred in developing those products.
 
Competition in the biotechnology and pharmaceutical markets may result in
competing products and reduce our revenues
 
  The markets for our products will be very competitive. Our competitors
include multinational pharmaceutical and chemical companies, specialized
biotechnology firms, and universities and other research institutions. Our
competitors may be more successful because of:
 
  . greater financial resources,
 
  . greater experience in research and development,
 
  . greater success in obtaining regulatory approval,
 
  . stronger sales and marketing efforts, and
 
  . earlier receipt of approval for competing products.
 
  Competitors may have developed or could develop new technologies that compete
with our products or even render our products obsolete.
 
  We believe that customers in our markets display a significant amount of
loyalty to their initial supplier of a particular product. Therefore, it may be
difficult to generate sales to customers who have purchased products from
competitors. To the extent we are unable to be the first to develop and supply
new products, our competitive position will suffer.
 
 
                                       10
<PAGE>
 
We lack sales and marketing experience and will rely upon third parties to
market our products
 
  We will have to develop a sales force or rely on arrangements with third
parties to market, distribute and sell any products we develop. We intend to
rely on third parties with established direct sales forces to market the
products we develop. These third parties may have significant control over
important aspects of the commercialization of our products, including market
identification, marketing methods, pricing, sales force recruitment and
management and promotional activities. We may be unable to control the actions
of these third parties. We may be unable to make arrangements with third
parties to perform these activities on favorable terms. Further, any internal
capabilities or third-party arrangements may not be successful.
 
Our success may depend on third-party reimbursement of patients' costs for our
products
 
  Our ability to market products successfully will depend in part on the extent
to which various third parties are willing to reimburse patients for the costs
of our products and related treatments. These third parties include government
authorities, private health insurers and other organizations, such as health
maintenance organizations. Third-party payors are increasingly challenging the
prices charged for medical products and services. Accordingly, if less costly
drugs are available, third-party payors may not authorize or may limit
reimbursement for our products, even if our products are safer or more
effective than the alternatives. In addition, the trend toward managed
healthcare and government insurance programs could result in lower prices and
reduced demand for our products. Cost containment measures instituted by
healthcare providers and any general healthcare reform could affect our ability
to sell products and may have a material adverse effect on us. We cannot
predict the effect of future legislation or regulation concerning the
healthcare industry and third-party coverage and reimbursement on our business.
 
Accidents related to hazardous materials could adversely affect our business
 
  Our operations require the controlled use of hazardous and radioactive
materials. Although we believe our safety procedures comply with the standards
prescribed by federal, state and local regulations, the risk of accidental
contamination or injury from these materials cannot be completely eliminated.
In the event of such an accident, we could be liable for any damages that
result, which could seriously damage our business. Additionally, an accident
could damage our research and manufacturing facilities and operations.
 
Potential product liability claims could affect our earnings and financial
condition
 
  We face a potential risk of product liability claims based on the testing,
manufacturing and marketing of our products. We carry product liability
insurance relating to potential claims arising from our clinical trials which
is limited in scope and amount but which we believe to be adequate. However, we
may be unable to maintain this insurance at a reasonable cost or in sufficient
amounts to protect us against potential losses. A successful product liability
claim or series of claims brought against us could have an adverse effect on
our business.
 
You will experience immediate and substantial dilution
 
  Purchasers in this offering will pay more for their shares than existing
stockholders or individuals who acquire shares by exercising options granted
before this offering. At an assumed public offering price of $5.00 per share,
you will experience immediate dilution of $3.52 per share in pro forma net
tangible book value. You will also experience additional dilution upon (1) the
exercise by holders of outstanding options and warrants, (2) the conversion by
Schering AG of outstanding debt into shares of our common stock or (3) upon
Lilly's equity investment.
 
Absence of dividends could reduce our attractiveness to investors
 
  Some investors favor companies that pay dividends. We have never declared or
paid any cash dividends on our common stock. We intend to retain any future
earnings for funding growth and, therefore, we do not
 
                                       11
<PAGE>
 
anticipate paying cash dividends on our common stock in the foreseeable future.
Because we may not pay dividends, your return on this investment likely depends
on your ability to sell our stock at a profit.
 
  We have never declared or paid cash dividends on our common stock. We
currently intend to retain future earnings, if any, to support the development
of our business and for general corporate purposes, and do not anticipate
paying any cash dividends in the foreseeable future. We are also party to
agreements restricting our payment of dividends.
 
Our common stock has limited trading volume and a history of volatility which
could impair your investment
 
  The historical trading volume of our common stock has been limited. An active
public market for the common stock may not develop or be sustained. As a
result, you may be unable to sell shares purchased in this offering at the time
or price desired. The trading price of our common stock may fluctuate
substantially due to:
 
  . quarterly variations in our operating results,
 
  . our ability to raise additional funds,
 
  . changes in the status of our corporate collaborative agreements,
 
  . changes in earnings estimates by market research analysts,
 
  . clinical trials of products,
 
  . research activities, technological innovations or new products by us or
    our competitors,
 
  . developments or disputes concerning patents or proprietary rights,
 
  . sales of our stock by existing holders,
 
  . timing or denial by the FDA of clinical trial protocols or marketing
    applications,
 
  . securities class actions or other litigation,
 
  . changes in government regulations, and
 
  . general economic conditions.
 
  The market price of the common stock, and the market prices for securities of
biotechnology companies generally, have fluctuated dramatically in recent
years. These fluctuations have sometimes been unrelated to the operating
performance of the affected companies. As a result, the value of your shares
could vary significantly from time to time.
 
Both our corporate documents and Delaware law have anti-takeover provisions
that may discourage transactions for control at premium prices
 
  Our corporate documents:
 
  . require procedures to be followed and time periods to be met for any
    stockholder to propose matters to be considered at annual meetings of
    stockholders, including nominating directors for election at those
    meetings, and
 
  . authorize our Board of Directors to issue up to 5,000,000 shares of
    preferred stock without stockholder approval and to set the rights,
    preferences and other designations, including voting rights, of those
    shares as the Board of Directors may determine.
 
  These provisions, alone or in combination with each other, may discourage
transactions involving actual or potential changes of control, including
transactions that otherwise could involve payment of a premium over prevailing
market prices to holders of common stock.
 
  In addition, we are subject to provisions of the Delaware General Corporation
Law that may make some business combinations more difficult. Accordingly,
transactions that otherwise could involve payment of a premium over prevailing
market prices to holders of common stock may be discouraged or more difficult
for our company than for other companies organized in other jurisdictions.
 
 
                                       12
<PAGE>
 
Year 2000 issues may result in unanticipated costs or adverse effects on
operations
 
  Many currently installed systems and software products are coded to accept
only two digit entries in the date code field. Beginning in the year 2000,
these date code fields will need to accept four digit entries to distinguish
21st century dates from 20th century dates. As a result, in less than one year,
computer systems and/or software used by many companies may need to be upgraded
to comply with these "Year 2000" requirements. We are in the process of working
with our software vendors to ensure that the software that we have licensed
from third parties will operate properly in the year 2000 and beyond. In
addition, we are working with our external suppliers, service providers and
corporate partners to ensure that they and their systems will be able to
support our needs and, where necessary, interoperate with our server and
networking hardware and software infrastructure in preparation for the year
2000.
 
  We anticipate that we will incur less than $60,000 to complete our review and
remediation efforts. However, significant uncertainty exists concerning the
potential costs and effects associated with any year 2000 compliance. Any year
2000 compliance problems of ours, our customers or vendors could have a
material adverse effect on our business, results of operations and financial
condition.
 
                           FORWARD-LOOKING STATEMENTS
 
  Certain statements under the captions "Prospectus Summary," "Risk Factors,"
"Use of Proceeds," "Management's Discussion and Analysis of Financial Condition
and Results of Operations," "Business," and elsewhere in this prospectus are
"forward-looking statements." These forward-looking statements include, but are
not limited to, statements about our plans, objectives, expectations and
intentions and other statements contained in this prospectus that are not
historical facts. When used in this prospectus, the words "expect,"
"anticipate," "intend," "plan," "believe," "seek," "estimate" and similar
expressions are generally intended to identify forward-looking statements.
Because these forward-looking statements involve risks and uncertainties, there
are important factors that could cause actual results to differ materially from
those expressed or implied by these forward-looking statements, including our
plans, objectives, expectations and intentions and other factors discussed
under "Risk Factors."
 
                                       13
<PAGE>
 
                                USE OF PROCEEDS
 
  Ribozyme Pharmaceuticals will receive an estimated $7,300,000 in net proceeds
from the sale of the 1,800,000 shares of common stock offered by us, assuming a
public offering price of $5.00 per share and after deducting the estimated
placement agency fee and offering expenses. We intend to use these proceeds to
fund our preclinical studies and clinical trials of our products, research and
development and for working capital and other general corporate purposes. The
amounts we actually expend will vary significantly depending on a number of
factors, including:
 
  . results of preclinical studies and clinical trials of products,
 
  . progress of our research and development programs,
 
  . cost and timing of regulatory approvals,
 
  . terms of any collaborative arrangements into which we enter,
 
  . commercial potential of our products,
 
  . status of competitive products,
 
  . technological advances, and
 
  . hiring of additional personnel.
 
  As a result, we will retain significant discretion in the application of
these funds.
 
  We anticipate that the net proceeds of this offering, together with our
existing financial resources and expected revenues from our collaborations,
should be sufficient to meet our capital and operating requirements into mid-
2001. This estimate is based on assumptions that could be negatively impacted
by the matters discussed in "Risk Factors" and "Management's Discussion and
Analysis of Financial Condition and Results of Operations--Liquidity and
Capital Resources."
 
  Until we use the net proceeds as described above, we will invest them in
short-term, interest-bearing, investment grade securities.
 
                                       14
<PAGE>
 
                          PRICE RANGE OF COMMON STOCK
 
  Our common stock is traded on the Nasdaq National Market under the symbol
"RZYM." The following table sets forth, for the periods indicated, the high and
low sales prices per share of our common stock as reported on the Nasdaq
National Market.
 
<TABLE>
<CAPTION>
                                                                    HIGH   LOW
                                                                   ------ -----
   <S>                                                             <C>    <C>
   YEAR ENDED DECEMBER 31, 1997
     First Quarter................................................ $16.50 $9.88
     Second Quarter............................................... $12.38 $8.63
     Third Quarter................................................ $12.00 $7.38
     Fourth Quarter............................................... $11.38 $7.00
   YEAR ENDED DECEMBER 31, 1998
     First Quarter................................................ $ 9.34 $5.13
     Second Quarter............................................... $10.50 $4.88
     Third Quarter................................................ $ 6.25 $2.00
     Fourth Quarter............................................... $ 7.63 $3.31
   YEAR ENDED DECEMBER 31, 1999
     First Quarter (through March 24, 1999)....................... $ 5.75 $4.06
</TABLE>
 
  The sale price of the common stock as reported on the Nasdaq National Market
on March 24, 1999, was $5.00 per share. At March 24, 1999, there were
approximately 148 holders of record of our common stock.
 
                                DIVIDEND POLICY
 
  We have never declared or paid cash dividends on our common stock during any
of the periods presented above. We currently intend to retain future earnings,
if any, to support the development of our business and for general corporate
purposes, and do not anticipate paying any cash dividends in the foreseeable
future. We are also party to agreements restricting our ability to pay
dividends.
 
                                       15
<PAGE>
 
                                 CAPITALIZATION
 
  The following table describes our capitalization as of December 31, 1998, on
an actual basis and as adjusted to give effect to our receipt of the estimated
net proceeds from the sale of 1,800,000 shares of common stock offered by us at
the public offering price of $5.00 per share, after deducting the estimated
placement agency fee and offering expenses. When you read this table, it is
important that you also read "Use of Proceeds," "Management's Discussion and
Analysis of Financial Condition and Results of Operations" and our financial
statements and related notes.
 
<TABLE>
<CAPTION>
                                                           December 31, 1998
                                                          ---------------------
                                                           Actual   As Adjusted
                                                          --------  -----------
                                                             (in thousands)
   <S>                                                    <C>       <C>
   Long-term debt and capital lease obligations, net of
    current.............................................. $  4,545   $  4,545
   Stockholders' equity:
     Voting convertible preferred stock, $0.01 par value
      per share; 5,000,000 shares authorized; no shares
      outstanding........................................        0          0
     Common stock, $0.01 par value per share; 20,000,000
      shares authorized; 9,181,455 shares issued and
      outstanding, actual; 10,981,455 shares issued and
      outstanding, as adjusted*..........................       92        110
     Additional paid-in capital..........................   84,434     92,516
     Deferred compensation...............................      (69)       (69)
     Accumulated deficit.................................  (73,423)   (73,423)
                                                          --------   --------
       Total stockholders' equity........................   11,034     19,134
                                                          --------   --------
       Total capitalization.............................. $ 15,579   $ 23,679
                                                          ========   ========
</TABLE>
- --------
* As of March 15, 1999, as adjusted amount excludes the following:
 
  . 1,478,493 shares reserved for issuance under our stock option plan, of
    which 1,386,487 shares were outstanding, at a weighted average exercise
    price of $4.18 per share;
 
  . 487,458 shares issuable upon exercise of outstanding warrants at a
    weighted average exercise price of $22.76 per share;
 
  . 1,100,844 shares issuable to one of our collaborators upon conversion of
    outstanding debt, assuming a conversion price of $4.88 per share (our
    common stock price on March 15, 1999); and
 
  . 200,168 shares available for issuance under our Employee Stock Purchase
    Plan. See "Description of Capital Stock--Warrants" and "Management--Stock
    Option Plan."
 
                                       16
<PAGE>
 
                                    DILUTION
 
  If you invest in our common stock, your interest will be diluted to the
extent of the difference between the public offering price per share of our
common stock and the as adjusted net tangible book value per share of our
common stock after this offering. We calculate net tangible book value per
share by dividing the net tangible book value (total assets less intangible
assets and total liabilities) by the number of outstanding shares of common
stock.
 
  Our net tangible book value as of December 31, 1998, was $8.1 million in the
aggregate or $0.89 per share. After giving effect to the sale of the 1,800,000
shares of common stock we are offering at an assumed public offering price of
$5.00 per share, and the deduction of the estimated placement agency fee and
offering expenses payable by us, our net tangible book value as of December 31,
1998, as adjusted, would have been $16.2 million in the aggregate, or $1.48 per
share. This represents an immediate increase in the net tangible book value of
$0.59 per share to existing stockholders and an immediate dilution in net
tangible book value of $3.52 per share to new investors purchasing shares in
this offering.
 
  The following table illustrates this per share dilution:
 
<TABLE>
   <S>                                                              <C>   <C>
   Public offering price per share.................................       $5.00
     Net tangible book value per share as of December 31, 1998..... $0.89
     Increase per share attributable to new investors.............. $0.59
                                                                    -----
   As adjusted net tangible book value per share after this offer-
    ing............................................................       $1.48
                                                                          -----
   Dilution per share to new investors.............................       $3.52
                                                                          =====
</TABLE>
 
  At December 31, 1998, we had outstanding the following options and warrants
to purchase shares of common stock:
 
<TABLE>
<CAPTION>
                                                                WEIGHTED AVERAGE
                                                       NUMBER    EXERCISE PRICE
                                                      --------- ----------------
   <S>                                                <C>       <C>
   Stock option plan................................. 1,347,572      $ 4.21
   Warrants..........................................   487,458      $22.76
                                                      ---------
     Total........................................... 1,835,030
</TABLE>
  Additionally, on March 15, 1999, there were:
 
  . 92,006 options available for future grant under our stock option plan,
 
  . 200,168 shares available for issuance under our Employee Stock Purchase
    Plan, and
 
  . 1,100,844 shares issuable to one of our collaborators upon conversion of
    outstanding debt, assuming a conversion price of $4.88 per share (our
    common stock price on March 15, 1999).
 
  To the extent we issue these additional shares, there will be further
dilution to new investors.
 
                                       17
<PAGE>
 
                            SELECTED FINANCIAL DATA
 
  The following selected financial data are derived from our audited financial
statements. Our financial statements for 1994, 1995, 1996, 1997 and 1998 have
been audited by Ernst & Young LLP, independent auditors. These historical
results do not necessarily indicate future results. When you read this data, it
is important that you also read our financial statements and related notes, as
well as the section "Management's Discussion and Analysis of Financial
Condition and Results of Operations."
 
<TABLE>
<CAPTION>
                                       Year Ended December 31,
                          -----------------------------------------------------
                            1994       1995       1996       1997       1998
                          ---------  ---------  ---------  ---------  ---------
                            (amounts in thousands, except per share data)
<S>                       <C>        <C>        <C>        <C>        <C>
Statement of Operations
 Data:
Revenues:
  Collaborative
   agreements...........  $   1,145  $   1,178  $     759  $   1,976  $   8,963
  Grant and other
   income...............        172        102         14          7         25
  Interest income.......        270        395        936        795        634
                          ---------  ---------  ---------  ---------  ---------
    Total revenues......      1,587      1,675      1,709      2,778      9,622
Expenses:
  Research and
   development..........      9,212     12,204     14,189     15,170     16,941
  General and
   administrative.......      1,291      1,397      1,943      1,886      1,813
  Interest expense......        334        554        845        844        704
                          ---------  ---------  ---------  ---------  ---------
    Total expenses......     10,837     14,155     16,977     17,900     19,458
                          ---------  ---------  ---------  ---------  ---------
Equity in loss of
 unconsolidated
 affiliate..............         --         --         --         --      1,082
                          ---------  ---------  ---------  ---------  ---------
Net loss................  $  (9,250) $ (12,480) $ (15,268) $ (15,122) $ (10,918)
                          =========  =========  =========  =========  =========
Net loss per share
 (basic and diluted)....  $   (3.52) $   (3.86) $   (2.61) $   (2.04) $   (1.22)
                          =========  =========  =========  =========  =========
Shares used in computing
 net loss per share
 (basic and diluted)....      2,627      3,230      5,845      7,420      8,978
Balance Sheet Data:
Cash, cash equivalents
 and securities
 available-for-sale.....  $   7,734  $   6,420  $  17,594  $  16,102  $   6,512
Working capital.........      5,640      4,648     15,788     13,238      4,467
Total assets............     12,392     14,223     25,292     24,850     19,224
Capital lease
 obligations and long-
 term debt, net of
 current portion........      1,853      3,179      2,430      2,752      4,545
Accumulated deficit.....    (19,635)   (32,115)   (47,383)   (62,505)   (73,422)
Total stockholders'
 equity.................      8,247      8,478     20,362     18,870     11,034
</TABLE>
 
                                       18
<PAGE>
 
                    MANAGEMENT'S DISCUSSION AND ANALYSIS OF
                 FINANCIAL CONDITION AND RESULTS OF OPERATIONS
 
  The following Management's Discussion and Analysis of Financial Condition and
Results of Operations should be read in conjunction with the Financial
Statements of Ribozyme Pharmaceuticals and the notes therein included elsewhere
in this prospectus. Our discussion contains forward-looking statements based
upon current expectations that involve risks and uncertainties, such as our
plans, objectives, expectations and intentions. Our actual results and the
timing of certain events could differ materially from those anticipated in
these forward-looking statements as a result of certain factors, including
those set forth under "Risk Factors," "Business" and elsewhere in this
prospectus.
 
Overview of our Business
 
  Ribozyme Pharmaceuticals was founded to develop commercial products and
services based upon the significant potential of "ribozymes," a discovery of
Professor Thomas R. Cech for which he shared a Nobel Prize. Our primary
business focus is to use our technology to develop a new class of drugs
consisting of ribozymes to treat or prevent human disease. We are in various
stages of preclinical development and clinical trials for two lead product
candidates: ANGIOZYME for the treatment of solid tumor cancers and HEPTAZYME
for the treatment of Hepatitis C. Chiron is our collaborator for the
development and commercialization of ANGIOZYME. Lilly is our collaborator for
the development and commercialization of HEPTAZYME. We have gene function
identification and target validation agreements with Schering AG, Roche
Biosciences and GlaxoWellcome. In addition, we have existing gene function
identification and target validation agreements with Chiron and Parke-Davis
which are substantially complete, but we may be obligated to perform additional
work.
 
  We recently completed Phase Ia clinical trials for our most advanced product
candidate, ANGIOZYME. We expect to commence Phase Ib trials in the first
quarter of 1999 and Phase II trials by the end of the year. We expect to file
an IND for our second product candidate, HEPTAZYME, by the end of the year and
commence clinical trials in 2000. To date, we have committed substantially all
our resources to our research and product development programs. We have not
generated any revenues from product sales, nor do we anticipate any in the
foreseeable future. Our revenues consist primarily of research payments and
milestones from our collaborators. We depend upon funding from external
financing and corporate collaborations for our research and product development
programs and expect to do so for the foreseeable future.
 
  We expect to commit significant additional resources conducting clinical
trials for ANGIOZYME and HEPTAZYME, as well as for clinical trials for other
potential product candidates. In addition, although we believe our existing
manufacturing facilities and those available from contract manufacturers will
be satisfactory for the manufacture of our current product candidates through
clinical trials, we will need to commit significant resources in order to
support manufacture on a commercial scale. We have not been profitable since
inception and have an accumulated deficit of $73.4 million as of December 31,
1998. Losses have resulted primarily from our research and development
programs. We anticipate incurring additional losses as ANGIOZYME, HEPTAZYME and
other product candidates advance through development. In addition, some
payments under our collaborations are contingent upon our meeting particular
research or development goals. Therefore, we are subject to significant
variation in the timing and amount of our revenues and results of operations
from period to period.
 
  In 1998, we transferred our gene function identification and target
validation technology to Atugen in exchange for a substantial equity interest.
We will continue our existing gene function identification and target
validation agreements with our collaborators by subcontracting services to be
performed to Atugen. Atugen will enter into gene function identification and
target validation agreements directly with collaborators, but we will retain
rights to (1) use the technology internally, and (2) develop ribozymes as
therapeutic agents against targets validated by Atugen. In 1998, we received a
one-time license fee from Atugen for a portion of our gene function
identification and target validation technology. We will receive
 
                                       19
<PAGE>
 
payments for: (1) management and administrative services we provide, (2)
oligonucleotides and (3) prosecution of relevant patents. In addition, we will
retain exclusive manufacturing rights to ribozyme therapeutic agents resulting
from validation services. Atugen will be reimbursed for any subcontracting
services it provides to us on a full time equivalent basis.
 
  Our revenues are denominated in U.S. dollars, therefore, we have not been
exposed to foreign currency translation risks and have not engaged in any
hedging instruments.
 
Results of Operations for Years Ended December 31, 1998, 1997 and 1996
 
  Revenues. Revenues from collaborative agreements increased from $2.0 million
for the year ended December 31, 1997, to $9.0 million in 1998. The increase was
primarily due to $6.0 million recorded for Chiron partnership payments related
to the product development of ANGIOZYME. In addition, we received approximately
$650,000 in collaborative revenue in 1998 due to new target validation
agreements with Roche, Parke-Davis and GlaxoWellcome.
 
  Revenues from collaborative agreements increased from $759,000 in 1996 to
$2.0 million in 1997. The increase was primarily due to $1.5 million in
research payments made by Schering AG in 1997. The 1997 payments from Schering
AG were the first payments in the collaboration which includes $2.0 million in
annual research funding over the five-year term of the collaboration, provided
the agreement is extended for each of those years.
 
  Interest income was $936,000, $795,000 and $635,000 for the years ended 1996,
1997, and 1998, respectively. The higher interest income in 1996 resulted from
increased cash balances due to our initial public offering in April 1996.
Interest income has decreased in the last three years due to declining cash
balances. Interest income generally fluctuates as a result of cash available
for investment and prevailing interest rates.
 
  Expenses. Research and development expenses increased from $14.2 million in
1996 to $15.2 million in 1997, and increased to $16.9 million for the year
ended December 31, 1998. These increases were primarily due to the hiring of
additional personnel and the overall scale-up of research and product
development. Research and development expenses consist primarily of:
 
  . clinical and preclinical supplies and related costs,
 
  . salaries and benefits for scientific, regulatory, quality control and
    pilot manufacturing personnel,
 
  . consultants,
 
  . supplies,
 
  . occupancy costs, and
 
  . depreciation for laboratory equipment and facilities.
 
  In 1998, expenses were primarily related to ANGIOZYME development and target
validation service costs. We expect research and development expenses to
continue to increase as ANGIOZYME and HEPTAZYME proceed through clinical trials
and manufacturing.
 
  General and administrative expense decreased slightly from $1.9 million in
1996 to $1.89 million in 1997, and decreased slightly again to $1.81 million
for the year ended December 31, 1998. The slight decrease in general and
administrative expense in 1997 was primarily due to higher expenses in 1996
which included one-time cash and stock bonus payments made to our executive
officers in connection with our initial public offering in April 1996. The
decrease in 1998 was due to reimbursements of $480,000 made to us from Atugen
related to management's time during closing and start-up of operations. We
expect general and administrative expenses to increase as a result of hiring
additional management and administrative personnel and the incurring of legal
and other professional fees in connection with the overall expansion of our
operations and business development efforts.
 
                                       20
<PAGE>
 
  Interest expense has remained stable at $845,000 in 1996, $844,000 in 1997
and $704,000 in 1998. We expect interest expense to increase as we continue to
borrow under existing or new lines of credit to finance equipment purchases.
 
  In 1998, in connection with our initial cash investment of $2.0 million and
the transfer of our gene identification and target validation technology to the
newly formed affiliate, Atugen, we retained a 49.5% equity interest in the
voting stock of this company. However, at December 31, 1998, our interest
represents 83.2% of the outstanding common stock of Atugen. We do not meet the
criteria for consolidation of this affiliate because (1) we control less than
50% of Atugen's voting stock, and (2) the preferred shareholders retain
significant participating rights. Accordingly, we have accounted for our
investment in Atugen under the equity method. As a result, we have recorded our
share of the unconsolidated affiliate's 1998 net loss, or $1.1 million as
equity in loss of unconsolidated affiliate in our 1998 Statement of Operations.
At December 31, 1998, our remaining net investment in Atugen is $860,000, which
we expect to be eliminated entirely during 1999 as we share further in Atugen's
losses.
 
Liquidity and Capital Resources
 
  We have financed our operations since inception through public offerings in
April 1996 and October 1997, private placements of preferred stock and funds
received under our collaborative agreements. From inception through December
31, 1998, we have received approximately:
 
  . $29.0 million in net proceeds from private placements,
 
  . $31.1 million in net proceeds from public offerings,
 
  . $39.2 million from our collaborations, and
 
  . $9.8 million from equipment financing.
 
  We had cash, cash equivalents and securities available-for-sale of $6.5
million at December 31, 1998, compared with $16.1 million at December 31, 1997,
and $17.6 million at December 31, 1996. The $9.6 million decrease from 1997 to
1998 and the $1.5 million decrease from 1996 to 1997 were primarily the result
of cash used for research and development, investment in equipment, payments
under loan facilities and expenses incurred for general corporate purposes,
offset by net proceeds from the sale of common stock and preferred stock, loan
proceeds and research payments from collaborations.
 
  We invest our cash, cash equivalents and securities available-for-sale in
interest-bearing investment grade securities.
 
  Total additions for property, plant and equipment during 1998 were $936,000,
most of which were financed through our existing equipment loan facility with
Schering AG.
 
  Schering AG made a $2.5 million equity investment in us in May 1997 in
exchange for 212,766 shares of common stock and made an additional equity
investment of $2.5 million for 465,117 shares in April 1998. Separately,
Schering AG provided loans of $2.0 million in each of 1997 and 1998. We
received an additional $1.0 million advanced on this loan facility in January
1999. Schering AG will continue to provide loans of up to $2.0 million annually
for each of the next three years, provided that the collaboration is continued,
at Schering AG's option, in each of those years. If Schering AG does not
continue the collaboration, we will need to seek alternative sources of
financing. Amounts not used in any calendar year may be carried forward to
future years. According to the terms of our agreement with Schering AG, 50% of
any borrowings on the line of credit must be collateralized by equipment
purchases. The loans, which carry an interest rate of 8.0% per annum, are
immediately convertible into equity at the option of Schering AG. At December
31, 1998, the outstanding borrowings of $4.3 million were convertible into
approximately 992,000 shares of our common stock. Principal and interest
payments are deferred until maturity of the loans which is April 2004. In
addition, Schering AG made research payments of $2.0 million and $1.5 million
in 1998 and 1997, respectively. If the collaboration is continued, Schering AG
will make research payments of $2.0 million a year for each year through April
2001, but Schering AG may terminate its collaboration at any time. We may
 
                                       21
<PAGE>
 
earn success fees upon product development milestones and will manufacture
synthetic ribozyme products and receive royalties on sales of products
resulting from the collaboration. Schering AG may terminate the research
collaboration at any time by paying us termination fees.
 
  We anticipate that net proceeds of this offering, together with our existing
financial resources and expected revenues from our collaborations should be
sufficient to meet our anticipated operating and capital requirements through
mid-2001. We expect to incur substantial additional costs, including:
 
  . costs related to our research, drug discovery and development programs,
 
  . preclinical and clinical trials of our products, if developed,
 
  . prosecuting and enforcing patent claims,
 
  . general administrative and legal items, and
 
  . manufacturing and marketing of products, if any.
 
  We do not have any currently available credit facilities from which we may
borrow. In the future we may raise additional capital through public or private
financing, as well as from new collaborative relationships, new credit
facilities and other sources. We cannot assure you that funds will be available
on favorable terms, if at all. If we raise additional funds by issuing equity
securities, the holdings of existing stockholders will be further diluted. In
addition, future collaborative relationships may not successfully reduce our
funding requirements which may require us to relinquish or reduce rights to our
technologies or products. See "Risk Factors."
 
  At December 31, 1998, we had available net operating loss carryforwards,
research and development credit carryforwards and state investment credit
carryforwards of $73.4 million, $1.5 million and $31,000, respectively, for
income tax purposes. Our ability to utilize our net operating loss
carryforwards is subject to an annual limitation in future periods pursuant to
the "change in ownership" rules under Section 382 of the Internal Revenue Code.
 
Year 2000 Affect on Computer Systems
 
  Year 2000 issues result from the inability of some computer programs or
computerized equipment to accurately calculate, store or use a date subsequent
to December 31, 1999. The erroneous date can be interpreted in a number of
different ways; typically the year 2000 is represented as the year 1900. This
could result in a system failure or miscalculations causing disruptions of
operations, including, among other things, a temporary inability to process
transactions, send invoices or engage in similar normal business.
 
  Based on our evaluations and remediation efforts, we do not anticipate that
we will incur any significant costs relating to the assessment and remediation
of year 2000 issues. To date, we estimate that we have spent approximately
$20,000 in reviewing and remediating year 2000 issues and that total
expenditures incurred in completing our review and remediation efforts will not
exceed $60,000. These expenditures are budgeted as part of our operating
expenses. However, expenditures for year 2000 remediation efforts may exceed
this amount if unforeseen complications arise. Also, we or our vendors,
suppliers and corporate partners may not be able to successfully identify and
remedy all potential year 2000 problems.
 
  We have developed and are implementing a contingency plan including the
following:
 
  . maintaining all data in hard copy that is generated or collected by our
    vendors, suppliers and collaborators so any loss of data due to year 2000
    problems could be re-entered manually,
 
  . maintaining all of our accounting records in hard copy so that we can
    continue to manually pay vendors, employees, consultants and
    collaborators in the event that our accounting software or other computer
    programs or systems malfunction,
 
  . maintaining hard copies of all scientific and business related electronic
    data,
 
  . archiving critical business paperwork,
 
  . scheduling manufacturing campaigns not to extend or overlap the year 2000
    time change, and
 
  . upgrading security systems.
 
 
                                       22
<PAGE>
 
  We continue to review these requirements to complete our contingency plan for
noncritical business functions.
 
  We do not believe that we will have to modify or replace any significant
portions of our computer applications in order for our computer systems to
continue to function properly in the year 2000. However, a "worst case"
scenario may include the temporary interruption of research, development and
business if we need to upgrade or replace computer systems.
 
                                       23
<PAGE>
 
                                    BUSINESS
 
An overview of our company
 
  Ribozyme Pharmaceuticals is developing a new class of drugs based on
Professor Thomas R. Cech's discovery of "ribozymes," for which he shared a
Nobel Prize. Ribozymes, a form of ribonucleic acid ("RNA"), have the ability to
selectively inhibit protein production. Because many human disease states
result from abnormal protein production, we believe that ribozymes are
applicable to a wide range of human diseases. We are currently conducting
preclinical development and clinical trials for our two lead product
candidates, ANGIOZYME and HEPTAZYME. We are collaborating with Chiron for the
development and commercialization of ANGIOZYME, a drug for the treatment of
solid tumor cancers. We are collaborating with Lilly for the development and
commercialization of HEPTAZYME, a drug for the treatment of Hepatitis C, a
viral liver disease. Ribozymes also are useful in identifying the function of
specific genes (target validation) and in diagnosing disease. Our primary
business focus is to use our patented technology to develop a new class of
drugs containing ribozymes to treat or prevent human disease. In 1998, we
transferred our target validation and discovery technology to Atugen in return
for a substantial equity interest.
 
The traditional process of drug discovery and development
 
  Traditional drug discovery and development is difficult, time consuming and
extremely costly. Historically, diseases have been treated using drugs
developed based on clinical observation of symptoms which were correlated with
abnormal physiological processes and, where possible, biochemical changes. Most
drugs are chemicals designed to inhibit the function of a targeted molecule
with as few unwanted side effects as possible. Drug discovery is a complex
process, which includes:
 
  . selecting a target (usually a protein),
 
  . developing a screening assay,
 
  . chemically synthesizing large numbers of different molecules tested in
    cell cultures and in animal models for their effect on the target,
 
  . using those test results to narrow down the number of molecules, and
 
  . refining the molecules through additional chemical synthesis and testing.
 
  Unfortunately, drugs produced from this traditional process may have
undesirable side effects due to interactions with non-targeted molecules. These
side effects can limit the effective use of a drug.
 
  Pharmaceutical companies are under intense competitive pressure to identify
and commercialize novel drugs having fewer side effects more quickly and cost
effectively. Pricing pressures from managed care organizations, governmental
agencies and other third-party payors, coupled with the proliferation of new
technologies that offer revolutionary approaches to drug design and
development, are causing major changes in the drug development process.
 
Genetic function and human disease
 
  The abnormal production of proteins, which are products of genes, directly
causes many human diseases. The abnormality may be due to a defective gene or
to the over- or under-production of a protein by a "normal" gene. The abnormal
production of proteins may have direct effects on cells within the body or may
initiate a series of events involving other proteins within the body, thereby
producing disease. The gene functions of infectious agents, such as viruses,
allow replication and growth of infectious agents in the human body.
 
  Production of proteins from genes, called protein "expression," generally
involves two steps. First, the information from the DNA sequence of the gene is
"transcribed" to mRNA. The second step involves
 
                                       24
<PAGE>
 
"translation" of the mRNA and its information into a protein. The process by
which genetic information is "expressed" in the form of a protein is highly
selective; production of a particular protein generally requires its own
specific DNA sequence which leads to a corresponding specific mRNA sequence.
Blocking a gene's function, and hence the production of its associated
proteins, is an increasingly vital tool in treating and diagnosing human
disease.
 
Our ribozyme technology
 
  Our approach to drug discovery and development begins by either identifying a
gene in humans causing or contributing to disease or identifying an essential
gene in a disease-causing infectious agent. We analyze the nucleotide sequence
of the target gene and create a complementary ribozyme nucleotide sequence.
 
  A ribozyme is a sequence of nucleotides that has a catalytic core capable of
cleaving a specific mRNA molecule. Ribozymes act as "molecular scissors" by
cutting mRNA molecules into two ineffective strands, thereby preventing protein
production. Each ribozyme destroys only a specifically targeted mRNA sequence,
thereby minimizing the risk of unwanted side effects. In addition, ribozymes
can be used to identify gene function and validating the disease contributing
function of a specific gene. In this way, ribozymes assist in the
identification of new drug candidates. Our ribozyme technology is an important
bridge between the growing body of knowledge regarding gene function and its
contribution to the treatment or prevention of human diseases.
 
  We initially test the effectiveness of the ribozyme in cell cultures or in
animal models. If the ribozyme reduces or stops production of the protein
associated with the disease, or slows the associated growth or spread of the
disease, not only has the disease contributing function of the gene been
validated, but also a drug candidate has been identified.
 
  Once we identify a target gene and related ribozyme, we optimize the
ribozyme's effectiveness by (1) varying the length of the portion of the
ribozyme which binds to the mRNA to maximize the ribozyme's selectivity and (2)
modifying the chemical structure to increase the ribozyme's stability in the
human body. To successfully commercialize ribozyme products to treat or prevent
human disease, we must successfully deal with technical issues such as:
 
  . ribozyme design,
 
  . stability,
 
  . selectivity,
 
  . drug delivery and cellular absorption,
 
  . safety,
 
  . effectiveness, and
 
  . manufacturing synthesis and scale up.
 
  To date, we have achieved a number of significant milestones important to the
development of ribozymes and related technical issues, including the following:
 
  Design. We have developed a proprietary computer program to design ribozymes
against sites in a target mRNA sequence. This program allows us to accelerate
the identification of potential ribozyme product candidates and design multiple
back-up candidates.
 
  Stability. To be useful as a treatment, a ribozyme must remain stable in
human serum and cells long enough to destroy the targeted mRNA and ideally long
enough for each ribozyme molecule to destroy several mRNA molecules. Unmodified
ribozymes are stable and fully active in human serum for only a few seconds. We
have successfully produced chemically-modified ribozymes that are stable and
fully active in
 
                                       25
<PAGE>
 
human serum and cells for more than 10 days. We believe this level of stability
will be sufficient for ribozymes to be effective drugs.
 
  Selectivity. Based on third-party studies and our internal work, we believe
that a ribozyme with a binding region of approximately 15 nucleotides is
optimal. A binding region of this length is expected to match, on a statistical
basis, only one specific mRNA sequence in the entire human genome. Since the
ribozyme should interact only with the target mRNA, it should not affect other
gene function and, therefore, should not have side effects when used as a drug.
The high degree of selectivity of ribozymes has been demonstrated both by us
and by third parties.
 
  Drug Delivery and Cellular Absorption. Successful development of any drug
requires that the drug be delivered to the desired site in the body. We are
exploring local and systemic delivery of chemically synthesized ribozymes, as
well as vector delivery. For example, we have demonstrated systemic delivery of
chemically synthesized ribozymes without any delivery vehicle using either
intravenous or subcutaneous delivery in several animal models and in humans.
Additionally, we have identified several proprietary carriers which, when
combined with chemically synthesized ribozymes, have shown significant
increases in the effective delivery of ribozymes to a variety of different cell
types relative to ribozymes without a carrier.
 
  Safety. We have completed single and multiple dose animal safety studies with
several ribozymes which have confirmed the ribozymes' lack of toxicity. For
example, ANGIOZYME has shown a lack of toxicity in rodents and monkeys. As a
result, the FDA has allowed initial human clinical trials to be carried out in
healthy volunteers. A Phase Ia trial in healthy volunteers has now been
completed and has shown an excellent safety and tolerability profile.
 
  Effectiveness. We have demonstrated through internal research and in
conjunction with our collaborators that our ribozymes reduce the amount of
target mRNA and the level of corresponding protein produced as well as inhibit
the spread of disease. Studies showing the effectiveness of ribozymes have been
conducted in multiple animal models for cancer in both models of solid tumor
growth and metastasis, and in cell cultures for viral replication.
 
  Manufacturing Capabilities and Scale Up. To meet our needs for preclinical
studies, clinical trials and the eventual commercialization of ribozymes, we
must have the ability to manufacture a sufficient amount of ribozymes. We and
our collaborators have developed proprietary technology allowing us to
synthesize several thousand stabilized ribozymes in milligram quantities per
month. These quantities are sufficient to permit us to perform direct cell-
based screening of multiple potential target sites in short periods of time. We
have also developed the capability to manufacture kilogram quantities under the
FDA's current good manufacturing practices ("cGMP"). In addition, when we
combine our manufacturing capabilities with available contract manufacturing,
we expect to be able to produce those drugs currently under development in
sufficient quantities, and of the quality required by the FDA, for our
anticipated clinical trials.
 
The potential advantages of ribozymes in treating a disease
 
  We believe that ribozymes offer the following advantages over traditional
approaches to treating diseases:
 
  Potential Broad Applicability. Once a gene has been identified, a ribozyme
can be designed to target and destroy the associated mRNA to inhibit the
related gene function. Therefore, all diseases for which a gene can be
identified as a cause or an essential contributing factor of diseases are
potentially treatable with a ribozyme drug. In addition, identifying the
essential genes of viruses and other infectious agents that cause human disease
creates the potential to develop ribozyme products to inhibit these genes from
functioning and, consequently, prevent the targeted infectious agent from
surviving or reproducing.
 
 
                                       26
<PAGE>
 
  High Selectivity. The mechanism by which traditional drugs act on a target
gene or protein often is not well understood. Consequently, the side effects of
such drugs are difficult to predict and characterize. Side effects may be
reduced or avoided by using ribozymes designed to attach to and cut only a
specific targeted mRNA, a significant advantage over traditional drug
therapies. We have observed the selectivity of ribozymes in both animal studies
and human clinical trials. Because of this selectivity, only the function of
the targeted genetic sequence is affected; other molecules and gene functions
are not altered.
 
  Destruction of Target. Instead of temporarily preventing gene function like
traditional drugs, ribozymes destroy the target mRNA and stop the associated
protein production. By contrast, most drugs do not destroy their target. This
inherent feature of ribozymes may offer significant advantage in the treatment
of diseases caused by infectious agents such as viruses. For example, cleavage
of target viral mRNA by ribozymes will inhibit the virus's ability to
propagate, which may cause significant reduction in viral load in the patient.
 
Our business strategy
 
  Our primary business objective is to use our technology to identify and
develop drugs containing ribozymes to prevent or treat human disease. Our
secondary objective is to license our technology to others on terms which could
provide us an economic benefit. Our strategy for achieving these objectives
includes the following goals:
 
  Develop Identified Product Candidates. We are developing two products,
ANGIOZYME and HEPTAZYME. In collaboration with Chiron, we are developing
ANGIOZYME for the treatment of solid tumor cancers and metastasis, and possibly
for other diseases that require extensive new blood vessel formation. We have
completed a Phase Ia clinical trial for ANGIOZYME in healthy volunteers. We
will soon commence Phase Ib clinical trials in cancer patients. Internally, we
identified a second product, HEPTAZYME, for the treatment of Hepatitis C. In
collaboration with Lilly, we are conducting preclinical testing for HEPTAZYME
and we plan to file an IND before year-end.
 
  Identify New Product Candidates. We have developed a variety of sources to
identify additional product candidates. Internally, we are researching several
product candidates and intend to begin preclinical testing and development of
one of these product candidates by year-end. We believe that our relationship
with Atugen could provide an important source of new product candidates for us.
Atugen will seek additional partners in the pharmaceutical and biotechnology
industries using Atugen's gene function identification and validation
technology. We have retained rights to develop ribozymes against any targets
validated by Atugen on its own or for its partners. We are engaged in several
collaborations to validate selected genetic sequences as candidates for drugs
development. Under these collaborations, we have the right to develop ribozyme
products against validated targets not developed by our collaborators.
 
  Partner with Others to Develop Products. We intend to develop our products in
collaboration with larger corporate partners. In the past, we have entered into
collaborations prior to identifying product candidates and performing the
research and preclinical testing necessary to bring such products to
development. In the future, we intend to demonstrate a product candidate's
commercial potential through preclinical testing and, perhaps, early clinical
trials using internally funded research. We believe entering into a development
collaboration after a product's potential has been demonstrated will improve
our negotiating position. Our development process with HEPTAZYME prior to
entering into the Lilly collaboration is an example of this new partnering
strategy.
 
  Focus on Human Therapeutics and License Other Applications of Our
Technology. We will look for opportunities to license our technology on terms
which provide a reasonable opportunity for significant business benefit. In
late 1998, we transferred our gene function identification and validation
technology to Atugen in exchange for an equity interest in Atugen. We expect
Atugen to continue to build the target validation and discovery business by
actively pursuing collaborations with new corporate partners. We will benefit
from Atugen's activities through our ownership interest in Atugen, as well as
through the rights we retained to develop ribozymes against targets validated
by Atugen.
 
                                       27
<PAGE>
 
  Maintain and Expand Patent Portfolio and Proprietary Technology. To maximize
the value of our technology, we dedicate substantial resources to the discovery
of new inventions. We aggressively pursue patent protection. We currently own,
or have exclusive licenses to, 84 issued or allowed patents worldwide and have
over 100 patent applications pending worldwide.
 
OUR PRODUCT PROGRAMS
 
  The development process for our products starts with research and preclinical
development. Research includes identification of a target protein, synthesis of
an appropriate ribozyme to block expression of the target protein, and testing
the activity of the ribozyme in a specific cell population. Preclinical testing
includes pharmacology and toxicology testing in cell cultures and animal
models, product formulation, dosage studies and manufacturing scale-up for
submission of the necessary data to comply with regulatory requirements of the
FDA and similar agencies in other countries prior to commencement of human
trials. Regulatory requirements concerning the conduct of clinical trials are
described below in the section "--Government regulation of our drug development
activities."
 
  We are currently in various stages of development and clinical trials for two
products. ANGIOZYME is being developed to treat solid tumor cancers, but it may
also be applicable to other diseases such as diabetic retinopathy and macular
degeneration. HEPTAZYME is being developed to treat Hepatitis C.
 
 Angiozyme
 
  For a cancerous tumor to grow, the body must generate new blood vessels
surrounding the tumor to supply the blood necessary for tumor growth, a process
known as angiogenesis. In many cases, the Vascular Endothelial Growth Factor
("VEGF") molecule and its receptor are essential to angiogenesis. ANGIOZYME was
developed to inhibit the production of the VEGF receptor, thereby slowing or
stopping angiogenesis and related tumor growth. Animal studies conducted by us
and by independent third parties showed dramatic reduction in tumor growth and
metastasis. Animal studies using ribozymes alone and in conjunction with
existing cytotoxic cancer therapies demonstrated the elimination of metastasis
of the cancer. As a result of our research and preclinical studies, the FDA
approved an IND allowing us to begin clinical trials. We completed Phase Ia
clinical trials in healthy volunteers in January 1999. These trials, conducted
on 14 healthy volunteers, demonstrated safety and tolerability and showed no
drug related side effects. We will soon commence Phase Ib clinical trials
testing safety and tolerability in at least 16 cancer patients with a broad
spectrum of solid tumors and metastasis. We expect to initiate Phase II
clinical trials prior to the end of 1999.
 
  If the results of clinical trials are positive, ANGIOZYME could be developed
as a treatment of some solid tumor cancers such as cancers of the lung, breast,
prostate, colon and rectum. These cancers account for over 750,000 new cancer
cases and over 200,000 deaths per year in the United States alone. In addition,
ANGIOZYME could also be used in products for the treatment of other diseases in
which angiogenesis is a contributor such as the eye diseases, macular
degeneration and diabetic retinopathy.
 
  ANGIOZYME is being developed in collaboration with Chiron. We have control of
all development activities and decision. The material terms of the agreement
with Chiron are discussed below.
 
 Heptazyme
 
  We are developing a potential product to treat Hepatitis C, a viral disease
of the liver ("HCV"). There are over four million chronically infected persons
in the United States and over 175 million worldwide. HCV infects approximately
50,000 people with over 10,000 deaths associated with HCV each year in the
United States. It is the most common blood borne infection in the United States
and has been identified as a "silent epidemic" and "a daunting challenge to
public health" by the United States Congress.
 
 
                                       28
<PAGE>
 
  Current therapies for HCV are effective in less than 50% of existing patients
and they have serious side effects. Our research and preclinical testing has
indicated that HEPTAZYME selectively cuts HCV RNA in a manner that
significantly inhibits viral replication in cell culture. These results were
presented at a meeting of the American Association for the Study of Liver
Diseases in November 1998. It is also expected to be effective against all
known HCV sub-types, which now number over 90. We intend to conduct toxicology
and other preclinical studies commencing in the second quarter of 1999 and file
an IND with the FDA by the end of 1999.
 
  HEPTAZYME is being developed in collaboration with Lilly. The material terms
of the agreement are described below.
 
  Other Programs. In collaboration with Chiron, the City of Hope and Children's
Hospital (Los Angeles), we have successfully completed a gene therapy HIV Phase
I/IIa clinical trial. The treatment phase of this trial was completed in
December 1997. Five patients were treated, and no drug-related toxicities were
observed. In 1998, a proof-of-principle Phase II clinical trial in AIDS
Lymphoma patients was initiated. The pilot trial is intended to assess the
viability of the gene therapy approach for delivering anti-HIV ribozymes. The
commercial viability of current gene therapy technologies and thus the future
of this program will be decided during 1999.
 
  Internally, we are researching several product candidates and intend to begin
preclinical testing and development of one of these product candidates by year-
end.
 
  Chiron Collaboration. In July 1994, we entered into an agreement with Chiron
to collaborate exclusively on up to five specific targets selected by Chiron.
Four targets are currently subject to the exclusivity provision, including
ANGIOZYME and the target of our HIV product, thus Chiron has the right to
select an additional exclusive target. From time to time during the term of the
collaboration, Chiron also has the right to reserve four potential targets. In
addition, Chiron may replace exclusive targets with other targets including
reserved targets. No target may be selected as an exclusive or reserved target
if the rights to such target have been granted to a third party or such target
is the subject of an active internal development program.
 
  Unless otherwise mutually agreed, no target may be reserved for more than 18
months after its designation. During the 18-month period, we cannot develop, or
grant rights to third parties to develop, products against a reserved target.
Following such period, Chiron will not have any rights to a reserved target
unless during the 18-month period the reserved target replaces another target
as an exclusive target.
 
  Pursuant to the collaboration, we commenced a five-year joint research
program which expires in July 1999. During the five-year program, each party
pays for its own research and preclinical development of products. Additional
collaborative research may be done on a product against targets by mutual
agreement and either party may research and conduct preclinical testing on its
own, at its own cost.
 
  Either party may propose that an IND be submitted and Phase I clinical trials
be commenced for a product against exclusive targets. If the other party does
not agree to share equally in the development costs through Phase I clinical
trials, the party not sharing in the Phase I development cost forfeits any
rights to the proposed product.
 
  If, after jointly funded Phase I clinical trials have been completed, one
party discontinues funding its share of the costs of clinical development that
party would not share equally in the profits from product sales but would
receive a royalty based on net sales of that product. However, the non-
participating party may regain its interest in the profits of the product by
repaying the other party one-half of the development costs incurred solely by
the other party, plus a predetermined risk premium, at either the commencement
of Phase III testing or the filing of a New Drug Application ("NDA") or Product
License Application ("PLA").
 
                                       29
<PAGE>
 
In some instances we may pay up to 50% of such payment in shares of common
stock. If development of a product is funded equally by the parties, we will
share equally the profits from product sales.
 
  We have retained the right to manufacture chemically synthesized ribozyme
products resulting from the collaboration whether developed jointly or
individually by each party.
 
  Chiron holds exclusive worldwide marketing rights for all jointly developed
products, subject to a co-promotion agreement for sales in North America and
Europe. In Asia, Chiron has exclusive marketing rights with the right to
sublicense, although we have retained the right to share in 50% of the profits.
 
  The collaboration terminates on the later of (1) 30 years after the first
commercial sale of the last jointly developed product arising out of the
collaboration or (2) upon the expiration of patents or 15 years after the first
commercial sale for a solely developed product.
 
  As part of the collaboration, in 1994 Chiron made an equity investment of
$4.36 million in our stock. In addition, Chiron purchased 377,202 shares of our
common stock for $3.64 million in 1996. Also in 1996, Chiron purchased warrants
for 444,444 shares of our common stock for $2.0 million, exercisable at a price
of $22.50 per share with an expiration date of December 30, 2004.
 
  We and Chiron could not reach agreement on a development plan for ANGIOZYME.
In consideration for the payment by Chiron of $5.0 million of our research
costs related to ANGIOZYME prior to the filing of the IND for ANGIOZYME, we
amended the collaboration agreement in the following manner. If the parties do
not agree as to the plans, timing or budget for any development activities, our
proposed plans, timing and budget will be adopted but we must then fund 55% of
the costs for such development activities. If the total costs do not exceed our
proposed budget, Chiron must pay us 5% of the total costs incurred for such
development activities.
 
  Lilly Collaboration. In March 1999, we entered into a collaboration with Eli
Lilly and Company ("Lilly") pursuant to which Lilly was granted the exclusive
worldwide right to develop and commercialize HEPTAZYME and any other ribozyme
drug for the treatment of HCV infection. If Lilly abandons or does not
diligently pursue the development of HEPTAZYME or another ribozyme drug for the
treatment of HCV infection, all rights to HEPTAZYME and such other ribozymes
revert to us, subject to the right of Lilly to receive royalty payments, if
applicable, on the sale of products developed by us or our third-party
collaborators.
 
 
  Lilly will pay us $9.2 million in 1999, which includes: funding for research,
clinical trial materials and a $7.5 million equity investment. Including
development milestones, which we will be entitled to receive if a commercial
product is offered for sale in the United States, Europe and Japan, we would
receive as much as $38 million, including the $9.2 million. In addition we will
be entitled to royalties on the sale of products developed pursuant to the
collaborations. We would also realize increased revenues from product
manufacturing and research.
 
  We have the right to manufacture all ribozymes for clinical trials. In
addition, we have the manufacturing rights for any commercial product developed
from the collaboration subject to Lilly's right to manufacture a portion of the
commercial product, in which event Lilly must pay us an increased royalty on
product sales.
 
                                       30
<PAGE>
 
Gene Validation
 
  We developed a gene function identification and target validation business
internally to generate revenues and accelerate the discovery of potential drugs
using ribozymes. We entered into gene function identification and target
validation agreements with Schering AG, Chiron, Parke-Davis, Roche and
GlaxoWellcome and developed with our collaborators additional technologies
helpful in target validation and discovery. These technologies use ribozymes
and other oligonucleotides to block the function of genetic sequences selected
by our partners. The effect of the ribozyme or other oligonucleotides in cell
cultures or animal models is then analyzed to determine whether the protein
associated with the disease or the disease itself is reduced or eliminated.
Alternatively, a genetic sequence, the function of which is unknown, can be
analyzed using ribozyme inhibition in a collection of cell culture assays or
animal models that represent a broad range of biological functions.
 
  Gene Validation Collaborations. We entered into gene function identification
and target validation agreements with various collaborators and granted
licenses to these collaborators to use our technology to develop products
identified or validated under these collaborations.
 
  . Schering AG. In April 1997, we entered into a research collaboration with
Schering AG focusing on the use of ribozymes and related technologies for gene
function validation. We provide our expertise in ribozyme design, synthesis and
delivery, and Berlex Laboratories, Inc., a United States subsidiary of Schering
AG, provides candidate gene or expressed sequence tag targets, screening in
cell culture and animal models as well as development and commercialization
expertise to the collaboration. We anticipate that hundreds of potential
targets may be examined over a five-year period.
 
  Schering AG may reserve exclusive rights to a specified number of targets at
any time. Rights to a Schering AG target will revert to us, however, if
Schering AG is not developing or selling a product against such target.
Schering AG may not reserve exclusive rights to a target if we have granted a
third party license for products against that target or we are conducting an
active internal program for the development of a product against that target.
Schering AG has a license to commercialize both ribozyme and non-ribozyme
products from any validated targets subject to paying us certain milestone
success fees and royalties on product sales. We have the right to manufacture
ribozyme products developed by Schering AG and to develop independently any
ribozyme product not developed by Schering AG, unless Schering AG is developing
a non-ribozyme product against the same target and agrees to pay specified
milestone success payments to us in exchange for our relinquishing our right to
make ribozyme products against such target.
 
  In May 1997, Schering AG purchased 212,766 shares of our common stock for
$2.5 million and in 1998 Schering AG purchased 465,117 shares of common stock
for $2.5 million. Separately, Schering AG provided loans of $2.0 million in
both 1997 and 1998. We received an additional $1.0 million on this loan
facility in January 1999. Schering AG will continue to provide loans of up to
$2.0 million annually through 2001, provided that the collaboration continues
in each of those years. If Schering AG does not continue the collaboration, we
will need to seek alternative sources of financing. The loans, which carry an
interest rate of 8% per annum, are immediately convertible into equity at
Schering AG's option. At December 31, 1998, our outstanding borrowings of $4.3
million were convertible into approximately 992,000 shares of our common stock.
Principal and interest payments are deferred until maturity of the loans which
is in April 2004. In addition, Schering AG made research payments of $1.5
million in 1997 and $2.0 million in 1998 and, provided that the collaboration
is continued, will make research payments of $2.0 million a year through 2001,
but Schering AG may terminate its collaboration at any time. Upon payment of
termination fees to us, the research collaboration may be terminated at
Schering AG's option at any time.
 
  . Roche. In May 1998, we entered into a gene function identification and
target validation collaboration with Roche. Roche may obtain the exclusive
right to up to a specified number of targets over approximately five years if
it requests and pays for validation research for such targets. Roche may
reserve the rights to all targets related to a particular disease for up to
three years. It may not obtain the rights to products for a target or disease
which we have granted to third parties or to targets which we have patented
 
                                       31
<PAGE>
 
or for which we have pending patent applications. We do not receive periodic
fees from Roche but rather Roche pays us a set amount for the specific research
activities conducted on its behalf and for materials used in the research
program.
 
  Roche also is obligated to make payments for successful target validations.
Roche has the right to develop ribozyme or non-ribozyme products against
targets discovered or validated under the collaboration subject to the payment
to us of milestone success fees and royalties on product sales. We have the
right to manufacture ribozyme products developed by Roche and to develop
independently any ribozyme product not developed by Roche.
 
  . GlaxoWellcome. In July 1998, we entered into an agreement with
GlaxoWellcome to evaluate our gene function identification and validation
technology on a limited number of genes. GlaxoWellcome paid research fees to us
in connection with the evaluation program for reagents plus the cost of any
services or additional reagents requested by them. We will not be entitled to
any royalties or other payments in connection with products developed by
GlaxoWellcome against the initial targets covered by the evaluation agreement.
 
  . Chiron. In May 1996, we entered into a gene function identification and
target validation collaboration with Chiron for the use of ribozymes to
validate gene function. We and Chiron each pay a portion of the research and
development expenses of the collaboration. We paid Chiron $1.8 million for
research funding related to the collaboration. We do not receive periodic fees
but rather Chiron pays a predetermined amount for materials actually used in
the collaboration. The collaboration with Chiron is substantially complete, but
we may be obligated to perform additional work.
 
  Chiron has the option to reserve exclusive rights to a specified number of
targets for up to two and a half years as well as the exclusive right to any
products developed against the targets subject to the collaboration. We are
entitled to: (1) receive success payments related to the development of any
products arising under the agreement; (2) receive milestone success payments
for the development of ribozyme products and royalties on sales of any
commercial products containing ribozymes; (3) manufacture synthetic ribozymes;
and (4) develop any ribozyme product not developed by Chiron subject to the
payment of royalties on product sales to Chiron. Chiron also has the right to
manufacture endogenously delivered ribozyme products developed by us.
 
  .  Parke-Davis. In March 1998, we entered into a gene function identification
and target validation collaboration with Parke-Davis to use our technology to
validate genes as therapeutic targets. We do not receive periodic fees but
rather Parke-Davis pays for our research and for materials provided by us.
Parke-Davis will have the exclusive right to develop oligonucleotide products
against targets validated under the collaboration pursuant to a mutually
satisfactory license which we anticipate would provide for the payment of
milestone success fees and royalties on product sales. The collaboration with
Parke-Davis is substantially complete, but we may be obligated to perform
additional work.
 
  We expect to subcontract these agreements to Atugen in the future, subject to
the consent of our collaborators. If an agreement is subcontracted to Atugen,
we will retain any rights we have now under the collaboration to (1) milestone
success payments under the collaboration agreement; (2) royalties on products
developed by our collaborators; and (3) develop ribozyme products which our
collaborators choose not to develop under the terms of the agreements subject
to royalties from product that may be payable to our collaborators.
 
  Formation of Atugen. In 1998, we transferred our gene function identification
and target validation technologies to Atugen in exchange for an equity interest
in Atugen. This opportunity was attractive to us because substantial funding
was available from both outside investors and the German government. This
funding would not otherwise have been available to us and should allow us to
benefit indirectly from Atugen's expansion of the target validation business
and technology.
 
                                       32
<PAGE>
 
  We will benefit from Atugen's activities in the future in several ways:
 
  . we retain an interest in Atugen and, as of December 31, 1998, owned 49.5%
    of its equity,
 
  . we have the right to develop ribozymes against targets validated by
    Atugen for its customers,
 
  . we will be paid by Atugen for ribozymes and other material manufactured
    by us pursuant to our exclusive manufacturing rights,
 
  . we will be paid by Atugen for a portion of our costs of prosecuting
    patents applicable to Atugen's business,
 
  . we will be paid by Atugen for certain administrative and other services
    rendered by us to Atugen, and
 
  . we retain the right to use the target validation and discovery technology
    in non-high throughput applications for our own use and in connection
    with limited research and development collaborations with third parties.
 
  Financing for Atugen was accomplished through a combination of venture
capital investment, an investment by us and German government grants and loans.
We contributed $2.0 million in cash to Atugen. On December 31, 1998, we owned a
49.5% equity interest in Atugen. Our equity interest in Atugen is subject to
dilution if additional equity is issued for any purpose, such as to raise
additional capital in connection with acquisitions or in connection with stock
option or similar incentive plans for Atugen employees.
 
  We have the right to name two of six designees to Atugen's Board of Directors
and the Chairman of the Board for as long as we and BB BioVentures together own
a majority of Atugen's outstanding stock. Nonetheless, most corporate actions
taken by Atugen require a 75% vote or consent of the holders of Atugen's
outstanding stock.
 
  Pursuant to a service agreement with Atugen, we provide a business
development team which devotes 50% of its time to support Atugen's business
development efforts for nine months and, at Atugen's option, for an additional
three months. Our CEO, CFO and Vice President of Research, Dr. Christoffersen,
Mr. Bullock and Dr. Usman, respectively, devote up to 25% of their time to
Atugen activities for the first six months to ensure a smooth transfer of
technology. They will make every reasonable attempt to accommodate any
additional time needed by Atugen during or after the six month period.
 
  As part of the formation, Atugen received exclusive royalty-free licenses to
our extensive patents and technologies for target validation and discovery. We
received a one-time $2.0 million license payment in 1999 for a portion of the
licensed technology. The initial technology base includes our entire gene
function identification and target validation technologies for both chemically
synthesized and expressed nucleic acids, including target site selection, cell
culture assays, RNA and other assays, optimized delivery vehicles and animal
pharmacology.
 
  Atugen's primary goal is to accelerate discovery and validation of human
health therapeutic targets. It will provide a variety of technologies and
services to utilize information emerging from human genome sequencing efforts
to determine which genes are key factors causing human disease. The significant
technology base transferred from us to Atugen combined with the substantial
initial capitalization should allow Atugen to improve the speed and certainty
of identifying and validating new therapeutic targets both for corporate
partners and for internal use. As part of the formation, Atugen acquired
Transgenics Berlin-Buch GmbH in return for equity in Atugen. This transaction
provides Atugen with transgenic animal capabilities, allowing early and rapid
animal model assessment of the effect of inhibiting expression of a targeted
gene sequence using a ribozyme. Atugen formally opened its research and
administrative facilities in January 1999 on the Biomedical Research Campus of
the Max Delbruck Center in Berlin-Buch, Germany.
 
                                       33
<PAGE>
 
Other licenses
 
  An element of our business strategy is to enter into licensing agreements or
other arrangements to exploit our technology. We seek licensing partners who
pursue the development of drugs for human diseases and other applications of
our technology which we cannot otherwise develop due to our limited resources.
In the past, we have entered into the following two licenses for such
activities.
 
  Dow AgroSciences LLC. In September 1993, we entered into a collaborative
research feasibility study with Dow AgroSciences LLC. The goal of the
feasibility study was to demonstrate the ability of ribozymes to alter corn oil
traits. Dow AgroSciences provided research support for the feasibility study
conducted by us. The feasibility study was completed successfully in April 1997
and we entered into a long-term license agreement with Dow AgroSciences. The
agreement provides Dow AgroSciences with a worldwide, non-exclusive license to
some of our technology to commercialize oil, meal and starch products in corn
and several other crops. As consideration for the long-term license agreement,
41,666 shares of our common stock held by Dow AgroSciences were returned to us.
We will receive royalties on products sold; however, we do not expect to
receive royalties, if any, from this license for a substantial period of time.
 
  IntelliGene. In March 1997, we granted a worldwide exclusive license to some
of our technology to IntelliGene to develop and sell diagnostics for several
target diseases using ribozymes. IntelliGene is a private, venture-backed
biotechnology company headquartered in Jerusalem, Israel with an office in
Sudbury, Massachusetts. IntelliGene is developing diagnostic products using
ribozymes created using a process called in vitro evolution. The agreement
provides for IntelliGene to develop diagnostic tests initially against six
infectious diseases in their laboratories in Jerusalem and elsewhere, and to
develop, make and sell diagnostic products based on these tests, either alone
or through sublicenses. We received a license fee and will receive royalties on
product sales. We do not expect to receive royalties, if any, from this license
for a substantial period of time.
 
Our competition
 
  We are engaged in the rapidly changing business of developing treatments for
human disease through gene modulation. Competition among entities attempting to
develop gene modulation products for disease treatment is intense and is
expected to increase. We face direct competition from other companies engaged
in the research, development and commercialization of ribozyme-based technology
as well as competition from companies attempting other methods of gene
expression control, such as antisense and triplex. In addition, we compete with
large pharmaceutical companies and established biotechnology firms, many of
whom are developing new products for the treatment of the same diseases
targeted by us. In some cases, those companies have already commenced clinical
trials for their products. Many of these companies have significantly greater
financial resources and expertise in research and development, manufacturing,
preclinical studies and clinical trials, obtaining regulatory approvals and
marketing than us. Our collaborators and licensees may be conducting research
and development programs directed at the same diseases that we are targeting.
Smaller companies may also prove to be significant competitors, particularly
through collaborative arrangements with large pharmaceutical and biotechnology
companies. In addition, companies that complete clinical trials, obtain
required regulatory approvals and commence commercial sales of their products
before their competitors may achieve a significant competitive advantage.
 
  Academic institutions, governmental agencies and other public and private
research organizations also conduct research, seek patent protection and
establish collaborative arrangements for products and clinical development and
marketing. These companies and institutions compete with us in recruiting and
retaining highly qualified scientific and management personnel.
 
  In addition, we face competition based on product efficacy, safety, the
timing and scope of regulatory approvals, availability of supply, marketing and
sales capability, reimbursement coverage, price and patent position.
 
                                       34
<PAGE>
 
Our patents and proprietary technology
 
  Protecting patents and other proprietary rights is crucial to developing our
business. In addition to patents, we rely upon trade secrets, know-how and
continuing technological innovations in the design, synthesis, and purification
of ribozymes and in nucleic acid chemistry. We also rely on licensing
opportunities to develop and maintain our competitive position. It is our
policy to file patent applications when appropriate to protect technology,
inventions, and improvements that are considered important in the development
of our business.
 
  At the core of our technology are inventions and patents of the University of
Colorado developed by Dr. Thomas R. Cech and various of his associates.
Pursuant to the University's policies, these inventions and the related patents
(the "Cech Technology") became the property of the University. The Cech
Technology was assigned to the University's affiliate, University Research
Corporation ("URC"), which in turn assigned the rights to license parts of the
Cech Technology to Competitive Technologies, Inc. United States Biochemical
Corporation ("USB") licensed the Cech Technology pursuant to two sublicenses.
We have entered into a license with URC and sublicenses with USB and
Competitive Technologies pursuant to which we have obtained the exclusive
(except for non-commercial academic research) worldwide right to the Cech
Technology to, among other things, make, use and sell ribozymes and ribozyme
products covered by the licensed patents. The URC license and USB sublicense
are fully paid. The Competitive Technologies license provides for the payment
of a royalty on sales of ribozyme products covered by the licensed patents. We
may grant sublicenses to the licensed technology subject to the payment to
Competitive Technologies of a share of royalty income from such sublicenses or
a royalty on sales from sublicensed products, methods or services, depending on
the particular licensed patents involved. In addition, we must pay Competitive
Technologies a share of any option fee, license fee, prepaid royalty or other
"front-end" fee other than research and development funding paid in connection
with such sublicense.
 
  In September 1993, we were granted a right of first refusal to license any
new inventions, improvements and patents related to ribozyme technology
developed by Dr. Cech or others at the University, in exchange for payments. To
maintain this right, we agreed to fund research at CU through an unrestricted
grant of $750,000 payable in various installments over a five-year period. This
grant has been paid in full. In addition, we have agreed to pay CU a fee for
each invention accepted by us under the license.
 
  As part of our overall intellectual property strategy, we selectively enter
into agreements with academic institutions either to license pre-existing
technology or to support the development of new technologies and gain the
commercial rights to such new technologies.
 
  As a result of these licenses and sublicenses, and our own internal research,
we currently have the rights to 84 issued or allowed patents, and more than 100
patent applications under consideration worldwide. This includes exclusive
worldwide rights to 61 patents issued in the United States, 3 patents issued in
Europe, 1 patent issued in Japan and 8 patents issued in Australia. In
addition, Notices of Allowance have been received for at least 11 patents from
the United States Patent and Trademark Office. Six of the 61 United States
issued patents, 1 European patent and 1 Japanese patent cover enzymatic RNA and
the use of an enzymatic RNA to cleave a single stranded RNA (the "Cech
Patents"). The Cech Patents grant us the right to exclude others from
practicing ribozyme technology as it is currently known to us in the United
States, Europe and Japan irrespective of the application, the method of
production, the method of purification, or the ribozyme motif used. Unless
extended, the Cech Patents will expire in December 2008 in the United States
and December 2007 in Europe and in Japan. The additional issued patents cover
both ribozyme technology (e.g., ribozyme design, synthesis, chemical
modifications, delivery, ribozyme motifs, vector production, target site
selection) as well as application to specific therapeutic targets.
 
  In addition, we have filed or hold exclusive licenses to more than 100
pending United States and related foreign applications. Our patent portfolio
includes approximately 40 United States applications for various
areas of interest in human therapeutics and diagnostics and agricultural uses.
The portfolio also includes
 
                                       35
<PAGE>
 
approximately 80 United States applications related to the chemistry, design,
optimization, manufacture and delivery of ribozyme products. These patents
collectively extend our ribozyme patent coverage well beyond the life of the
Cech Patents.
 
  We have filed opposition documents against two patents granted to a
competitor in Europe. Opposition proceedings against two of our European and
Japanese patents have been initiated by our competitors. The Japanese
Opposition Division has rejected competitor oppositions, and has issued a
notification that it will maintain our Japanese patent without change. The
opposition proceedings against our European patent are still ongoing. In
addition, we anticipate interference proceedings against some of our patents
and patent applications in the United States. Our patents and applications are
soundly based, but the extent of protection may vary in different countries and
no assurance can be given that any patent will provide commercially significant
protection or will not be challenged, invalidated, or circumvented. Litigation
could prove necessary to protect our patent position, which would result in our
incurring substantial costs as well as diverting our efforts. Atugen will be
responsible for the patent prosecution costs for patents transferred to it.
 
  Competitors or other patent holders could bring legal actions against us
involving our patents, patent applications or rights to use proprietary
technology. If any actions succeed, in addition to any potential liability for
damages, we could be enjoined from selling the affected product, or be required
to obtain a license in order to continue to manufacture or market the product.
There can be no assurance that we would prevail in any such action or that any
license required under any such patent would be made available on acceptable
terms, if at all. There has been, and there will likely continue to be,
significant litigation in the pharmaceutical industry regarding patent and
other intellectual property rights. Any additional litigation could consume a
substantial portion of the our resources regardless of the outcome.
 
Government regulation of our drug development activities
 
  The development, manufacture and potential sale of therapeutics is subject to
extensive regulation by United States and foreign governmental authorities. In
particular, pharmaceutical products undergo rigorous preclinical and clinical
testing and to other approval requirements by the FDA in the United States
under the federal Food, Drug and Cosmetic Act and the Public Health Service Act
and by comparable agencies in most foreign countries.
 
  Before testing agents with potential therapeutic value in healthy human test
subjects or patients may begin, stringent government requirements for
preclinical data must be satisfied. The data, obtained from studies in several
animal species, as well as from laboratory studies, are submitted in an IND
application or its equivalent in countries outside the United States where
clinical studies are to be conducted. Preclinical data must provide an adequate
basis for evaluating both the safety and the scientific rationale for the
initiation of clinical trials.
 
  Clinical trials are typically conducted in three sequential phases, although
these phases may overlap. In Phase I, which frequently begins with initial
introduction of the compound into healthy human subjects prior to introduction
into patients, the product is tested for safety, adverse affects, dosage,
tolerance, absorption, metabolism, excretion and clinical pharmacology. Phase
II typically involves studies in a small sample of the intended patient
population to assess the efficacy of the compound for a specific indication to
determine dose tolerance and the optimal dose range as well as to gather
additional information relating to safety and potential adverse effects. Phase
III trials are undertaken to further evaluate clinical safety and efficacy in
an expanded patient population at geographically dispersed study sites to
determine the overall risk-benefit ratio of the compound and to provide an
adequate basis for product labeling. Each trial is conducted in accordance with
certain standards under protocols that detail the objectives of the study, the
parameters to be used to monitor safety and the efficacy criteria to be
evaluated. Each protocol must be submitted to the FDA as part of the IND.
 
  Data from preclinical and clinical trials are submitted to the FDA as an NDA
for marketing approval and to other health authorities as a marketing
authorization application. The process of completing clinical
 
                                       36
<PAGE>
 
trials for a new drug is likely to take a number of years and requires the
expenditure of substantial resources. Preparing an NDA or marketing
authorization application involves considerable data collection, verification,
analysis and expense. There can be no assurance that FDA or any other health
authority approval will be granted on a timely basis, if at all. The approval
process is affected by a number of factors, primarily the risks and benefits
demonstrated in clinical trials as well as the severity of the disease and the
availability of alternative treatments. The FDA or other health authorities may
deny an NDA or marketing authorization application if the authority's
regulatory criteria are not satisfied or may require additional testing or
information.
 
  Even after initial FDA or other health authority approval has been obtained,
further studies, including Phase IV post-marketing studies, may be required to
provide additional data on safety and will be required to gain approval for the
use of a product as a treatment for clinical indications other than those for
which the product was initially tested. Also, the FDA or other regulatory
authorities may require post-marketing reporting to monitor the side effects of
the drug. Results of post-marketing programs may limit or expand the further
marketing of the products. Further, if there are any modifications to the drug,
including changes in indication, manufacturing process or labeling or a change
in manufacturing facility, an application seeking approval of such changes will
be required to be submitted to the FDA or other regulatory authority.
 
  Whether or not FDA approval has been obtained, approval of a product by
regulatory authorities in foreign countries must be obtained prior to
commencing commercial sales of the product in such countries. The requirements
governing the conduct of clinical trials and product approvals vary widely from
country to country, and the time required for approval may be longer or shorter
than that required for FDA approval. Although there are some procedures for
unified filings for certain European countries, in general, each country at
this time has its own procedures and requirements. Further, the FDA regulates
the export of products produced in the United States and may prohibit the
export of such products even if these are approved for sale in other countries.
 
  In addition to FDA requirements, the National Institute of Health ("NIH") has
established guidelines for research involving recombinant DNA molecules, which
are utilized by us and our collaborators and licensees. These guidelines apply
to all recombinant DNA research within the United States or its territories
which is conducted at or supported by the NIH. Under current guidelines,
proposals to conduct clinical research involving gene therapy which is
supported by the NIH must be reviewed by the NIH Recombinant DNA Advisory
Committee. Our vector delivery of ribozymes will need to be reviewed by this
Committee.
 
  We are also subject to regulation under the Occupational Safety and Health
Act, the Environmental Protection Act, the Toxic Substances Control Act, the
Resources Conservation and Recovery Act and other present and potential future
federal, state and local regulations.
 
  Completing the multitude of steps necessary before marketing can begin
requires the expenditure of considerable resources and a lengthy period of
time. Delay or failure in obtaining the required approvals, clearances or
permits by us, our corporate partners or our licensees would have a material
adverse affect on our ability to generate sales or royalty revenue. The impact
of new or changed laws or regulations cannot be predicted with any accuracy.
 
Our manufacturing and marketing strategies
 
  To support our preclinical and clinical trial manufacturing requirements, we
constructed manufacturing facilities that we believe comply with applicable
regulatory requirements. We have also established operational quality assurance
and quality control procedures. We believe that our existing facilities and
those available from contract manufacturers will be satisfactory for production
of ribozymes needed through clinical trials for our products currently in
development.
 
  We do not currently have the facilities or means to manufacture, market,
distribute or sell on a commercial scale any of products we may develop. We
will need to develop our own facilities or contract
 
                                       37
<PAGE>
 
with third parties for the manufacture of products. We have expanded our
quality control and quality assurance program internally, including adopting a
set of standard operating procedures designed to assure that any products
manufactured by or for us are made in accordance with cGMP and other applicable
domestic and foreign regulations.
 
  In connection with establishing of our manufacturing capabilities, we have
entered into agreements with Pharmacia Biotech and Protogene. In November 1995,
we agreed to collaborate with Pharmacia Biotech to develop better synthesis and
purification methods for the preparation of modified amidites and chimeric
oligonucleotides on a large scale. The goal of the collaboration is to reduce
the cost of manufacturing ribozymes and other oligonucleotides products that
use amidites. Pharmacia Biotech, a subsidiary of Pharmacia & Upjohn, Inc., has
expertise in the manufacture of oligonucleotides synthesis and purification
instrumentation and software. Under the terms of the collaboration, Pharmacia
Biotech is providing us with synthesis instrumentation and software, research
funding and milestone payments, a portion of which may be set-off against
future royalties payable to us.
 
  In December 1996, we entered into an agreement with Protogene, a private
biotechnology company, to develop an instrument allowing high throughput
synthesis of non-DNA oligonucleotides. Under the terms of the agreement, we
have purchased an instrument manufactured by Protogene.
 
  We expect to market and sell any products developed, at least initially,
directly and through co-promotion or other licensing arrangements with third
parties, including our collaborators. In some markets, we may enter into
distribution or partnership agreements with pharmaceutical or biotechnology
companies that have large, established sales organizations.
 
Our Employees
 
  As of March 15, 1999, we had 65 full-time employees, including a technical
scientific staff of 50. Our future performance depends significantly on the
continued service of our key personnel. None of our employees are covered by
collective bargaining arrangements. We believe our employee relations are good.
 
Legal Proceedings
 
  We are not actively involved in any litigation which could reasonably be
expected to have a material adverse effect on our business or the results of
our operations.
 
Properties
 
  We lease approximately 30,000 square feet of laboratory, manufacturing and
office space at 2950 Wilderness Place, Boulder, Colorado, under an operating
lease that lasts through June 2007. This facility will be sufficient to meet
our needs at least through 2000.
 
Our Scientific Advisory Board
 
  We are assisted in our research and development activities by our Scientific
Advisory Board composed of leading scientists who meet with us several times
each year to review our research and development activities, and to discuss
technological advances and our business. We also have collaborative
relationships with several board members that further advance our product
development. Our current Scientific Advisory Board members are:
 
Thomas R. Cech, Ph.D.Distinguished Professor, Department of Chemistry &
                     Biochemistry, University of Colorado; Chairman, SAB
 
Gerald Joyce, M.D., Ph.D.
                     Professor, Department of Molecular Biology, Scripps
                     Research Institute
 
Edward Mocarski, Ph.D.
                     Professor and Chairman, Departments of Microbiology &
                     Immunology, Stanford University
 
 
                                       38
<PAGE>
 
Gary Nabel, M.D., Ph.D.
                     Professor, Departments of Internal Medicine and
                     Biological Chemistry, University of Michigan
 
Bruce Sullenger, Ph.D.
                     Assistant Professor, Departments of Experimental Surgery
                     and Genetics, Duke University
 
Olke C. Uhlenbeck, Ph.D.
                     Professor, Department of Chemistry and Biochemistry,
                     University of Colorado
 
  Each member has entered into an exclusive consulting agreement with Ribozyme
Pharmaceuticals in the field of ribozymes and signed confidentiality and non-
disclosure agreements. In 1998, they each received:
 
  . an annual retainer of $4,000 paid quarterly,
 
  . an honorarium of $1,000 per day for meetings attended, and
 
  . options for 4,000 shares of our common stock, which vest ratably over
    three years.
 
                                       39
<PAGE>
 
                                   MANAGEMENT
 
Directors and Executive Officers
 
  The directors and executive officers of Ribozyme Pharmaceuticals are as
follows:
 
<TABLE>
<CAPTION>
Name                        Age Position
- ----                        --- --------
<S>                         <C> <C>
Ralph E. Christoffersen,     61 Chief Executive Officer, President and Director
 Ph.D. (1)................
 
Lawrence E. Bullock.......   43 Vice President of Administration and Finance,
                                Chief Financial Officer and Secretary
 
Alene A. Holzman..........   42 Vice President of Business Development and
                                General Manager of Target Validation and
                                Discovery Business
 
Thomas H. Rossing, M.D....   49 Vice President of Product Development
 
Nassim Usman, Ph.D........   39 Vice President of Research
 
David T. Morgenthaler (1)    79 Chairman of the Board
 (2)......................
 
Jeremy L. Curnock Cook (1)   49 Director
 (3)......................
 
Anthony B. Evnin, Ph.D.      58 Director
 (1) (2)..................
 
David Ichikawa (3)........   46 Director
 
Anders P. Wiklund (2)        58 Director
 (3)......................
</TABLE>
- --------
(1) Member of the Executive Committee.
(2)Member of the Compensation Committee.
(3)Member of the Audit Committee.
 
  Ralph E. Christoffersen, Ph.D., has served as Chief Executive Officer,
President and Director of Ribozyme Pharmaceuticals since June 1992. From 1989
to June 1992, Dr. Christoffersen was Senior Vice President and Director of U.S.
Research at SmithKline Beecham Pharmaceuticals, a pharmaceutical company. From
1983 to 1989, he held senior management positions in research at The Upjohn
Company, a pharmaceutical company. Prior to joining The Upjohn Company, Dr.
Christoffersen served as a Professor of Chemistry and Vice Chancellor for
Academic Affairs at the University of Kansas, and as President of Colorado
State University. He received his Ph.D. in physical chemistry from Indiana
University.
 
  Lawrence E. Bullock has served as Vice President of Administration and
Finance, Chief Financial Officer and Secretary, since January 1996. From
December 1990 to January 1996, Mr. Bullock was Chief Financial Officer,
Director of Finance and Administration and Secretary of La Jolla Pharmaceutical
Company, a biopharmaceutical company. Mr. Bullock received his M.B.A. from the
University of Utah.
 
  Alene A. Holzman has served as Vice President of Business Development and
General Manager of Target Validation and Discovery Business since April 1997.
From January 1990 to March 1997, Ms. Holzman was Vice President of ChemTrak
Corporation, a medical technology firm, where she was responsible for finance,
business development and marketing and sales. From 1987 to 1990, she was Vice
President of CytoSciences, Inc., a biomedical company, and from 1981 to 1987
she was Vice President of Marketing and Sales for Hana Biologics, Inc. (now
Cell Genesys Corporation), a biotechnology firm. Ms. Holzman received her
M.B.A. from the University of California at Berkeley.
 
  Thomas H. Rossing, M.D., has served as Vice President of Product Development
since July 1997. From July 1996 to July 1997, Dr. Rossing was Vice President of
Clinical Development and Regulatory Affairs at GeneMedicine, Inc., a
biotechnology company. From March 1993 to July 1996, Dr. Rossing was Director
of International Respiratory Clinical Research at GlaxoWellcome, a
pharmaceutical company. He has also
 
                                       40
<PAGE>
 
served as Director of Clinical Pharmacology and Worldwide Regulatory Liaison at
Merck Research Laboratories, a pharmaceutical company, and a staff physician at
Brigham and Women's Hospital in Boston, Massachusetts. He received his M.D.
degree from Harvard University. Dr. Rossing announced that he is retiring
effective August 31, 1999.
 
  Nassim Usman, Ph.D., has served as Vice President of Research since May 1996.
From April 1994 until May 1996, Dr. Usman served as Director of Chemistry and
Biochemistry Research at Ribozyme Pharmaceuticals and from September 1992 until
April 1994 Dr. Usman served as Senior Scientist in Chemistry and Biochemistry.
From January 1987 to September 1992, Dr. Usman was a Postdoctoral Fellow and
Scientist in the Departments of Biology and Chemistry at the Massachusetts
Institute of Technology. Dr. Usman received his Ph.D. in chemistry from McGill
University.
 
  David T. Morgenthaler has served as a director since February 1992 and was
elected Chairman of the Board in December 1995. Mr. Morgenthaler was a founder
of and has been Managing Partner of Morgenthaler Ventures, a private venture
capital firm, since 1968. He has been a director of a number of public and
private companies. Mr. Morgenthaler received his M.S. degree from the
Massachusetts Institute of Technology.
 
  Jeremy L. Curnock Cook has served as a director since July 1995. Mr. Cook is
a director of Rothschild Asset Management, an investment fund, and has been
responsible for the Rothschild Bioscience Unit since 1987. Mr. Cook founded the
International Biochemicals Group in 1975 which he subsequently sold to Royal
Dutch Shell in 1985, remaining as Managing Director until 1987. He is also a
director of the International Biotechnology Trust plc, Creative BioMolecules
Inc., Targeted Genetics Inc., Cantab Pharmaceuticals plc, Sugen, Inc., Cell
Therapeutics, Inc., Amrad Corporation, Vanguard Medica plc, Angiotech
Pharmaceuticals, Inc., Inflazyme Pharmaceuticals, Inc. and Biocompatibles
International plc. Mr. Cook received an M.A. in Natural Sciences from Trinity
College Dublin.
 
  Anthony B. Evnin, Ph.D., has served as a director since February 1992. Dr.
Evnin has been a General Partner of Venrock Associates, a venture capital
partnership, since 1975. He is also a director of AxyS Pharmaceutical
Corporation, Centocor, Inc., Opta Food Ingredients, Inc., and Triangle
Pharmaceuticals, Incorporated. Dr. Evnin received his Ph.D. from the
Massachusetts Institute of Technology.
 
  David Ichikawa has served as a director since May 1998. Mr. Ichikawa has been
employed by Chiron Corporation, a biotechnology company, since September 1994
and is currently Vice President of Finance and Operations of Chiron
Technologies. He has also held management positions at Boehringer Mannhiem
Corporation and Chiron (Cetus) Corporation. Mr. Ichikawa received his M.B.A.
from the University of California at Berkeley.
 
  Anders P. Wiklund has served as a director since August 1994. Since January
1997, Mr. Wiklund has been the principal of Wiklund International, an advisory
firm to the biotechnology and pharmaceutical industries. From 1967 through
1996, Mr. Wiklund served in numerous executive positions for the Kabi and
Pharmacia group of companies, including President and CEO of Kabi Vitrum Inc.
and Kabi Pharmacia, Incorporated. Mr. Wiklund is also a director of Trega
Bioscience, Inc., Medivir, A.B. and InSite Vision, Inc., as well as private
company boards. Mr. Wiklund received a Master of Pharmacy degree from the
Pharmaceutical Institute in Stockholm.
 
                                       41
<PAGE>
 
Executive Compensation
 
  The following table summarizes the compensation paid to or earned by our
Chief Executive Officer and our other four most highly compensated executive
officers whose annual compensation exceeded $100,000 in 1998 ("Named Executive
Officers").
 
                           Summary Compensation Table
 
<TABLE>
<CAPTION>
                                  Annual Compensation                        Long-term Compensation
                                  -------------------------              ----------------------------------
                                                                                     Shares
                                                              Other      Restricted   Underlying     All
                                                              Annual       Stock       Options      Other
Name and Principal Position  Year Salary($)       Bonus($)   Comp.($)    Awards(#)    Granted(#)   Comp.($)
- ---------------------------  ---- ----------      ---------  --------    ----------   ----------   --------
<S>                          <C>  <C>             <C>        <C>         <C>          <C>          <C>
Ralph E. Christoffersen,
 Ph.D. .................     1998     285,670         50,000  37,862(1)                198,748(2)    4,998(3)
Chief Executive Officer
 and                         1997     269,520         50,000  45,000(1)        --      129,450       4,744(3)
President                    1996     247,248             --  70,000(1)   188,100(4)    97,770     153,910(4)
Lawrence E. Bullock ....     1998     150,800         25,000  75,883(5)        --       85,957(2)    4,998(3)
Vice President of
 Administration              1997     136,254         25,000  35,524(5)        --       37,500       4,744(3)
and Finance, CFO and
 Secretary                   1996     118,433         15,000  24,993(5)        --       66,000          --
Alene A. Holzman(6).....     1998     156,900          6,500  37,721(7)        --      100,000(2)    4,998(3)
Vice President of
 Business                    1997     108,557         12,500  28,389(7)        --       80,000       3,494(3)
Development and General
 Manager of Target
 Validation and
 Discovery Business
Thomas H. Rossing,
 M.D.(8)................     1998     250,650             --  34,000(9)        --      110,624(2)    4,998(3)
Vice President of            1997     105,859         22,000  84,008(9)        --      107,500          --
 Product Development
Nassim Usman, Ph.D. ....     1998     183,038(11)     23,000  25,841(10)                99,167(2)    4,998(3)
Vice President of
 Research                    1997     158,004             --  25,397(10)       --       45,000       4,744(3)
                             1996     132,919         25,000  20,499(10)       --       53,892          --
</TABLE>
- --------
(1) Includes (a) $50,000 in 1996 and $25,000 in each of 1997 and 1998 for
    forgiveness of a loan made to Dr. Christoffersen for relocation expenses;
    and (b) $20,000 in each of 1996 and 1997 and $12,862 in 1998 to assist him
    with the tax liability relating to the loan forgiveness.
(2) Includes shares granted in connection with the stock option repricing in
    1998. See "Stock Option Plan--Repricing." All Named Executive Officers
    received an option to purchase 0.75 share of common stock in exchange for
    an option representing one share.
(3) Matching contributions in common stock made by Ribozyme Pharmaceuticals
    under our 401(k) Salary Reduction Plan.
(4) Dr. Christoffersen received a bonus of $342,010, payable $153,910 in cash
    and $188,100 in shares of common stock (18,810 shares at our initial public
    offering price of $10.00 per share), upon closing of our initial public
    offering in April 1996.
(5) Includes (a) $9,058 and $9,641 in 1996 and 1997, respectively, representing
    implied interest related to an interest-free loan made to Mr. Bullock for
    relocation expenses; (b) $15,000 in each of 1997 and 1998 for partial
    forgiveness of the loan; (c) $7,883 in each of 1997 and 1998 for taxes
    relating to the loan; (d) $3,000 in each of 1997 and 1998 as reimbursements
    for dependent daycare expenses; and (e) $15,935 and $50,000, in 1996 and
    1998, respectively, to reimburse Mr. Bullock for relocation expenses.
(6) Ms. Holzman joined Ribozyme Pharmaceuticals on April 1, 1997.
(7) Includes (a) $10,036 in 1997 representing implied interest related to an
    interest-free loan made to Ms. Holzman for relocation expenses; (b) $15,853
    and $9,721 in 1997 and 1998, respectively, to reimburse Ms. Holzman for
    relocation expenses; (c) $25,000 in 1998 for partial forgiveness of the
    loan; and (d) $2,500 and $3,000 in 1997 and 1998, respectively, as
    reimbursements for dependent day care expenses.
 
                                       42
<PAGE>
 
 (8) Dr. Rossing joined Ribozyme Pharmaceuticals on July 28, 1997.
 (9) Includes (a) $14,901 in 1997 representing implied interest related to an
     interest-free loan made to Dr. Rossing for relocation expenses; (b)
     $34,000 in 1998 for partial forgiveness of the loan; and (c) $69,107 in
     1997 to reimburse Dr. Rossing for relocation expenses.
(10) Includes (a) $20,499 in 1996 representing implied interest related to an
     interest-free loan made to Dr. Usman for relocation expenses; (b) $15,000
     in each of 1997 and 1998 for partial forgiveness of the loan; (d) $7,883
     in each of 1997 and 1998 for taxes relating to the loan; and (d) $2,496 in
     each of 1997 and 1998 as reimbursements for dependent day care expenses.
 
(11) Includes $13,988 in additional salary for Dr. Usman's three month
     temporary position as Vice President of Atugen.
 
Stock Option Plan
 
  In March 1996 we amended, restated and merged our stock option plans and
named the resulting plan the 1996 Stock Option Plan (the "Plan"). Currently,
1,478,493 shares of our common stock are reserved for issuance under the Plan.
As of March 15, 1999, options to purchase 1,386,487 shares were outstanding
under the Plan. The Plan will terminate in January 2006, unless earlier
terminated by the Board of Directors. The purpose of the Plan is to:
 
  . attract and retain qualified personnel,
 
  . provide additional incentives to our employees, officers, directors and
    consultants, and
 
  . promote the success of our business.
 
  Under the Plan, we may grant or issue incentive stock options and
supplemental (non-qualified) stock options to our consultants, employees,
officers and directors.
 
  Administration. Our Board has delegated administration of the Plan to a
Compensation Committee comprised of three independent directors (see "Board
Committees"). Subject to the limitations set forth in the Plan, the Board or
the Compensation Committee has the authority to:
 
  . select the persons to whom grants are to be made,
 
  . designate the number of shares to be covered by each option,
 
  . determine whether an option is an incentive stock option or a non-
    statutory stock option,
 
  . establish vesting schedules, and
 
  . subject to restrictions, specify the type of consideration to be paid
    upon exercise and to specify other terms of the options.
 
  Terms. The maximum term of options granted under the Plan is ten years,
however, the maximum term is five years for incentive options granted to a
person who at that time owns 10% of the total combined voting power of all
classes of stock. The aggregate fair market value of the stock with respect to
which incentive stock options are first exercisable in any calendar year may
not exceed $100,000 per optionee. Any portion in excess of $100,000 shall be
treated as non-statutory stock options. Options granted under the Plan are non-
transferable and generally expire upon the earlier of the stated expiration
date or three months after the termination of an optionee's service to Ribozyme
Pharmaceuticals. However, the expiration date would be 18 months in the event
the optionee's employment terminates by reason of death, or 12 months in the
event the optionee's employment terminates due to disability, or a longer or
shorter period as may be specified in the option agreement.
 
  Our Board has discretion in connection with a merger, consolidation,
reorganization or similar corporate event where we are the surviving
corporation to prescribe the terms and conditions for the modifications of the
options granted under the Plan. If we are not the surviving corporation in the
event of our dissolution or
 
                                       43
<PAGE>
 
liquidation, or our merger or consolidation, all outstanding options will
terminate unless assumed by another corporation.
 
  No specific vesting schedule is required under the Plan. The exercise price
of incentive stock options must equal at least the fair market value of the
common stock on the date of grant, except that the exercise price of incentive
stock options granted to any person who at the time of grant owns stock
possessing more than 10% of the combined voting power of all classes of stock
must be at least 110% of the fair market value of the stock on the date of
grant. The exercise price on non-statutory stock options under the Plan may be
no less than 85% of the fair market value of the common stock on the date of
grant.
 
  Repricing. In September 1998 our Board of Directors approved a repricing of
all employee stock options outstanding under the Plan. Pursuant to this
repricing, each Named Executive Officer holding options received 0.75 option
for each one option surrendered with a new vesting date and an exercise price
of $3.00 per share. All non-executive employees who were option holders
received one new option for each one option surrendered with a new vesting date
and an exercise price of $3.00 per share. As a result of this repricing offer,
890,921 options were canceled and 747,060 options were granted effective
September 18, 1998.
 
                                       44
<PAGE>
 
  The following table contains information about stock options granted to each
of the Named Executive Officers during 1998 under the Plan:
 
                             Option Grants in 1998
 
<TABLE>
<CAPTION>
                                       Individual Grants
                         -----------------------------------------------
                                      % of Total                         Potential Realizable
                         Number of     Options                                 Value at
                           Shares      Granted                           Annual Rate of Stock
                         Underlying       to                              Price Appreciation
                          Options     Employees    Exercise               for Option Term(4)
                          Granted         in        Price     Expiration ---------------------
                           (#)(1)      1998(2)   ($/Share)(3)    Date      5%($)      10%($)
                         ----------   ---------- ------------ ---------- ---------- ----------
<S>                      <C>          <C>        <C>          <C>        <C>        <C>
Ralph E.
 Christoffersen.........   76,874(5)      6.7%      $3.00      09-18-08     145,037    367,552
                          *76,874(5)      6.7        3.00      09-18-08     145,037    367,552
                           22,500         2.0        5.63      12-02-08      79,665    201,887
                          *22,500         2.0        5.63      12-02-08      79,665    201,887
                          -------        ----
                          198,748        17.4
Lawrence E. Bullock.....   39,395(5)      3.4        3.00      09-18-08      74,326    188,356
                          *21,562(5)      1.9        3.00      09-18-08      40,681    103,093
                           12,500         1.1        5.63      12-02-08      44,258    112,160
                          *12,500         1.1        5.63      12-02-08      44,258    112,160
                          -------        ----
                           85,957         7.5
Alene A. Holzman........   30,000(5)      2.6        3.00      09-18-08      56,601    143,437
                          *30,000(5)      2.6        3.00      09-18-08      56,601    143,437
                           20,000         1.8        5.63      12-02-08      70,814    179,455
                          *20,000         1.8        5.63      12-02-08      70,814    179,455
                          -------        ----
                          100,000         8.8
Thomas H. Rossing.......   40,312(5)      3.5        3.00      09-18-08      76,056    192,741
                          *40,312(5)      3.5        3.00      09-18-08      76,056    192,741
                           15,000         1.3        5.63      12-02-08      53,110    134,592
                          *15,000         1.3        5.63      12-02-08      53,110    134,592
                          -------        ----
                          110,624         9.6
Nassim Usman............   44,542(5)      3.9        3.00      09-18-08      84,037    212,965
                          *29,625(5)      2.6        3.00      09-18-08      55,893    141,644
                           12,500         1.1        5.63      12-02-08      44,258    112,160
                          *12,500         1.1        5.63      12-02-08      44,258    112,160
                          -------        ----
                           99,167         8.7
</TABLE>
- --------
*  These options become 100% vested upon the completion of various research or
   business performance milestones.
(1) All options, other than performance-based options which are indicated by *,
    vest in increments of 20% over a five-year period and first become
    exercisable on the first anniversary of the grant date. Options granted in
    connection with the stock option repricing first vest on September 18,
    1999. The options are granted for a term of ten years, subject to earlier
    termination in events related to termination of employment.
(2) In 1998 we granted options representing an aggregate of 1,139,560 shares of
    our common stock to our employees, including the Named Executive Officers.
(3) The exercise price of each option was equal to the fair market value of the
    common stock on the date of the option grant as determined by the Board of
    Directors.
(4) Amounts reported in these columns show hypothetical gains that may be
    realized upon exercise of the options, assuming the market price of common
    stock appreciates at the specified annual rates of
 
                                       45
<PAGE>
 
   appreciation, compounded annually over the term of the options. These
   numbers are calculated based upon rules promulgated by the SEC. Actual
   gains, if any, depend on the future performance of our common stock and
   overall market conditions.
(5) Shares granted in connection with the stock option repricing.
 
  The following table contains information about the number and value of stock
options held by each Named Executive Officer as of December 31, 1998. No other
Named Executive Officer exercised any stock options during 1998. A stock
option is "in-the-money" if the closing market price of our common stock
exceeds the exercise price of the stock option. The value of "in-the-money"
unexercised stock options set forth in the table represents the difference
between the exercise price of these options and the closing sales price of our
common stock on December 31, 1998, as reported by the Nasdaq National Market,
$4.38 per share.
 
                          1998 Year-End Option Values
 
<TABLE>
<CAPTION>
                                    Number of
                              Securities Underlying     Value of Unexercised
                               Unexercised Options      In-the-Money Options
                             at December 31, 1998(#)   at December 31, 1998($)
    Name                    Exercisable/Unexercisable Exercisable/Unexercisable
    ----                    ------------------------- -------------------------
<S>                         <C>                       <C>
Ralph E. Christoffersen....      69,706/174,374            176,794/178,536
Lawrence E. Bullock........       17,847/89,394              28,295/91,863
Alene A. Holzman...........       12,001/87,250              16,560/65,205
Thomas H. Rossing..........       9,000/101,624              12,420/98,841
Nassim Usman...............       28,265/85,885              47,537/84,288
</TABLE>
 
Employment agreements
 
  Ralph E. Christoffersen. In May 1992, we entered into an employment
agreement with Ralph E. Christoffersen, Ph.D., our President and Chief
Executive Officer, which, as amended, currently provides for:
 
  . an annual salary of $297,000,
 
  . an annual performance-based cash bonus of up to $80,000,
 
  . an interest-free loan of $250,000 which has been forgiven in its
    entirety,
 
  . repayment of relocation expenses,
 
  . stock options to acquire 74,444 shares of common stock at an exercise
    price of $0.45 per share which vest ratably over five years,
 
  . stock options to acquire 31,446 shares of common stock at an exercise
    price of $0.45 per share which vested upon our completion of performance
    milestones,
 
  . stock options for common stock as reflected in the tables in this
    "Management" section, and
 
  . a bonus of $342,010, paid in cash and common stock upon the completion of
    our initial public offering in April 1996.
 
  Dr. Christoffersen's agreement may be terminated upon his death, disability
or for cause. If we terminate Dr. Christoffersen's employment, he is entitled
to receive all accrued salary and benefits up to his termination and, unless
he has been terminated for cause, nine months of severance pay at the same
monthly rate as in effect at the time of his termination. If termination
occurs after January 1, 2000, Dr. Christoffersen shall be paid a lump sum cash
payment of up to $27,500.
 
  Lawrence E. Bullock. In January 1996, we entered into an employment
agreement with Lawrence E. Bullock, our Vice President of Administration and
Finance, Chief Financial Officer and Secretary, which, as amended, currently
provides for:
 
                                      46
<PAGE>
 
  . an annual salary of $158,350,
 
  . an annual performance-based cash bonus of up to 20% of his current
    salary,
 
  . a signing bonus of $15,000,
 
  . stock options for common stock as reflected in the tables in this
    "Management" section, and
 
  . repayment of relocation expenses, including an interest-free loan of
    $75,000 made in 1996 and forgivable in five equal installments, grossed-
    up for taxes, as long as Mr. Bullock remains employed by us. The loan had
    an outstanding balance of $30,000 as of March 15, 1999.
 
If we terminate Mr. Bullock's employment without cause, he is entitled to six
months' severance pay at his then current salary.
 
  Nassim Usman, Ph.D. In May 1996, we entered into an employment agreement with
Nassim Usman, Ph.D., our Vice President of Research, which, as amended,
currently provides for:
 
  . an annual salary of $177,925,
 
  . an annual performance-based cash bonus of up to 20% of his current
    salary,
 
  . stock options for common stock as reflected in the tables in this
    "Management" section, and
 
  . an interest-free loan of $75,000 made in May 1996 and forgivable in five
    equal installments, grossed-up for taxes, as long as Dr. Usman remains
    employed by us. The loan had an outstanding balance of $45,000 as of
    March 15, 1999.
 
  If we terminate Dr. Usman's employment without cause, he will be entitled to
six months' severance pay at his then current salary.
 
  Alene A. Holzman. In February 1997, we entered into an employment agreement
with Alene A. Holzman, our Vice President of Business Development and General
Manager of Target Validation and Discovery Business, which, as amended,
currently provides for:
 
  . an annual salary of $166,325,
 
  . an annual performance-based cash bonus of up to 20% of her current
    salary,
 
  . stock options for common stock as reflected in the tables in this
    "Management" section, and
 
  . an interest-free loan of $75,000 made in June 1997 and forgivable in
    three equal installments as long as Ms. Holzman is employed by us. The
    loan had an outstanding balance of $50,000 as of March 15, 1999.
 
  If we terminate Ms. Holzman's employment without cause, she is entitled to
six months' severance pay at her then current salary.
 
  Thomas H. Rossing. In July 1997, we entered into an employment agreement with
Thomas H. Rossing, M.D., our Vice President of Product Development, which, as
amended, currently provides for:
 
  . an annual salary of $258,175,
 
  . an annual performance-based cash bonus of up to 15% of his current
    salary,
 
  . stock options for common stock as reflected in the tables in this
    "Management" section, and
 
  . an interest-free loan of $100,000 made in September and 1997 forgivable
    in three equal installments as long as Dr. Rossing is employed by us. The
    loan had an outstanding balance of $66,000 as of March 15, 1999.
 
  Dr. Rossing has given notice that he will retire from Ribozyme
Pharmaceuticals on August 31, 1999. If we terminate Dr. Rossing's employment
without cause prior to that time, he will be entitled to six months' severance
pay at his then current salary.
 
                                       47
<PAGE>
 
Employee Benefits
 
  Executive Bonus Plan. In March 1998, our Executive Bonus Plan was adopted by
the Board of Directors. This Bonus Plan provides our executive officers with
the opportunity to earn an annual bonus contingent upon their fulfillment of
annual goals as determined by our Compensation Committee comprised of three
independent directors. The Compensation Committee has complete authority to
establish the goals for each executive officer, to interpret all provisions of
the Bonus Plan and to make all other determinations necessary or advisable for
the administration of the Bonus Plan. The Compensation Committee may award each
of our executive officers with an annual bonus comprised of one or more of the
following:
 
  . cash payment,
 
  . stock options pursuant to our stock option plan, or
 
  . forgiveness of any portion of the principal of interest-free loans
    provided to the executive officer.
 
  Section 401(k) Plan. As part of our effort to attract and maintain high
quality staff, we adopted a 401(k) Salary Reduction Plan and Trust on June 1,
1992. Our employees may make pre-tax elective contributions of up to 20% of
their salary, subject to limitations prescribed by law. All contributions are
paid to a trustee who invests for the benefit of members of the 401(k) Plan. In
March 1997, the 401(k) Plan was amended to provide that we may match the
employee's contributions with common stock. We may amend or terminate the
401(k) Plan at any time, subject to legal restrictions.
 
  Employee Stock Purchase Plan. In March 1996, we adopted an Employee Stock
Purchase Plan (the "Purchase Plan"), which authorizes the issuance of up to
300,000 share of our common stock to eligible employees. Generally, each
offering lasts for twenty-four months, and purchases are made on each October
31 and April 30 during each offering. For example, the initial offering began
on April 11, 1996, and terminated on April 30, 1998. Common stock is purchased
for accounts of employees participating in the Purchase Plan at a price per
share equal to the lower of:
 
  . 85% of the fair market value of a share of common stock on the date of
    commencement of participation in the offering, or
 
  . 85% of the fair market value of a share of common stock on the date of
    purchase.
 
  Generally, all regular employees, including executive officers, may
participate in the Purchase Plan and may authorize payroll deductions of up to
15% of their base compensation for the purchase of common stock under the
Purchase Plan. Our Board of Directors has the authority to terminate the
Purchase Plan at its discretion. As of March 1, 1999, 99,832 shares had been
issued pursuant to the Purchase Plan.
 
Director Compensation
 
  Fees. All non-employee directors receive a fee of:
 
  . $1,000 per day for each Board or Committee meeting attended, and
 
  . $500 per day for participating telephonically in a meeting of the Board
    or a Committee.
 
  Stock Options. Non-employee directors may also receive stock options for
5,000 shares of our stock annually under our stock option plan. In 1997 and
1998, each non-employee director was granted an option to purchase 5,000
shares. The options vest after one year of service. In addition, Mr. Wiklund
received an option to purchase 4,444 shares in June 1994, of which 1,111 shares
vested immediately and the remaining 3,333 shares vest in increments of 20%
over five years starting in 1995.
 
Board Committees
 
  The Board has established an Audit Committee, a Compensation Committee and an
Executive Committee. The Executive Committee, consisting of Messrs.
Morgenthaler (Chairman) and Cook and Drs. Christoffersen and Evnin, manages and
operates our business.
 
                                       48
<PAGE>
 
  The Compensation Committee, consisting of Dr. Evnin (Chairman) and Messrs.
Morgenthaler and Wiklund:
 
  . reviews and recommends for Board approval grants of options pursuant to
    our stock option plan,
 
  . decides salaries and incentive compensation for our employees and
    consultants, and
 
  . recommends compensation for executive officers.
 
  The Audit Committee, consisting of Messrs. Ichikawa (Chairman), Cook and
Wiklund:
 
  . recommends to the Board the selection of independent auditors,
 
  . reviews the results and scope of the audit and other services provided by
    our independent auditors, and
 
  . reviews and evaluates our audit and control functions.
 
Compensation Committee Interlocks
 
  The members of our Compensation Committee have no interlocking relationships
as defined under SEC regulations.
 
Director and Officer Indemnification and Liability
 
  Pursuant to provisions of Delaware General Corporation Law ("DGCL"), we have
adopted provisions in our certificate of incorporation which provide that our
directors shall not be personally liable for monetary damages to us or our
stockholders for breach of fiduciary duty as a director, except for liability:
 
  . for any breach of the director's duty of loyalty to us or our
    stockholders,
 
  . for acts or omissions not in good faith or which involve intentional
    misconduct or a knowing violation of law,
 
  . under Section 174 of the DGCL relating to improper dividends or
    distributions, and
 
  . for any transaction from which the director derived an improper personal
    benefit.
 
  This limitation of liability does not affect the availability of equitable
remedies such as injunctive relief or rescission.
 
  Our bylaws authorize us to indemnify our officers, directors, employees and
agents to the extent permitted by the DGCL. Pursuant to Section 145 of the
DGCL, which empowers us to enter into indemnification agreements with our
officers, directors, employees and agents, we have entered into separate
indemnification agreements with our directors and executive officers which may,
in some cases, be broader than the specific indemnification provisions
contained in the DGCL. The indemnification agreements may require us to
indemnify the executive officers and directors against liabilities that may
arise by reason of their status or service as directors or executive officers,
other than liabilities arising from acts or omissions not in good faith or
willful misconduct, and to advance expenses incurred as a result of any
proceeding against them as to which they could be indemnified.
 
  There is no pending litigation or proceeding involving any of our directors,
officers, employees or agents where indemnification will be required or
permitted, and we are not aware of any threatened litigation or proceeding that
may result in a claim for indemnification.
 
                                       49
<PAGE>
 
                              CERTAIN TRANSACTIONS
 
  We believe that the following transactions were in our best interests. As a
matter of policy, these transactions were, and all future transactions between
Ribozyme Pharmaceuticals and any of our officers, directors or principal
stockholders will be:
 
  . approved by a majority of the independent members of our Board of
    Directors,
 
  . entered into on terms no less favorable to Ribozyme Pharmaceuticals than
    could be obtained from unaffiliated third parties, and
 
  . entered into in connection with bona fide business purposes.
 
  Executive Loans. We made interest-free loans for relocation expenses to our
executive officers when we hired them. We have forgiven all or a portion of the
outstanding principal amount of each loan under the terms of each officer's
employment agreement. See "Management--Employment Agreements."
 
<TABLE>
<CAPTION>
                                                                  Balance as of
       Name                                         Loan Amount   March 15, 1999
       ----                                         -----------   --------------
   <S>                                              <C>           <C>
   Ralph E. Christoffersen, Ph.D. .................  $250,000(1)     $     0
   Lawrence E. Bullock.............................    75,000(2)      30,000
   Nassim Usman, Ph.D. ............................    75,000(3)      45,000
   Alene A. Holzman................................    75,000(4)      50,000
   Thomas H. Rossing...............................   100,000(5)      66,000
</TABLE>
- --------
(1) $50,000 forgiven in each of June 1993, January 1995, January 1996 and
    January 1997, and $25,000 forgiven in each of January 1994 and January
    1998.
(2) $15,000 forgiven in each of June 1997, January 1998 and January 1999.
(3) $15,000 forgiven in each of June 1997 and May 1998.
(4) $25,000 forgiven in March 1998.
(5) $34,000 forgiven in July 1998.
 
  Chiron Transactions. Chiron and Ribozyme Pharmaceuticals granted each other
licenses to technologies and agreed to undertake research activities pursuant
to a collaboration agreement. Chiron purchased:
 
  . 100,000 shares of our common stock for a purchase price of $3.60 per
    share,
 
  . 107,095 shares of our Series E Preferred Stock for a purchase price of
    $37.35 per share, and
 
  .  a warrant at a price of $4.50 per warrant share, exercisable for 444,444
     shares of our common stock for an exercise price of $40.50 per share.
 
  In February 1996, we amended the warrant issuable to Chiron to reduce the
exercise price from $40.50 per share to $22.50 per share. When we closed our
initial public offering in April 1996, Chiron:
 
  . purchased 377,202 shares of our common stock for $3,640,000 at the
    initial public offering price less one-half of the underwriting discount,
 
  . paid us $1,800,000 to complete the purchase of its warrant, and
 
  . received 35,127 additional shares of our common stock pursuant to anti-
    dilutive provisions.
 
  Chiron also has a representative on our Board of Directors.
 
  In May 1996, we entered into a second collaboration with Chiron for the use
of ribozymes to characterize gene function. The collaborations give Chiron the
right to develop and commercialize products that result from the collaboration,
and entitle us to receive product development milestone payments and royalties
on sales of commercial products. Chiron and Ribozyme Pharmaceuticals each pay a
portion of the
 
                                       50
<PAGE>
 
research and development expenses of the collaboration, and we agreed to
provide Chiron $1.8 million, which was paid in 1996, for research funding
related to the proposed collaboration.
 
  Schering AG Transaction. In April 1997, we entered into a research
collaboration with Schering focusing on the use of ribozymes and related
technologies for gene function validation. Schering AG purchased:
 
  . 212,766 shares of our common stock for $2.5 million in May 1997, and
 
  . 465,117 shares of our common stock for $2.5 million in 1998.
 
  Separately, Schering AG provided loans of $2.0 million in both 1997 and 1998.
We received an additional $1.0 million on this loan facility in January 1999.
Schering AG will continue to provide loans of up to $2 million annually for
each year through 2001, provided that the collaboration is continued in each of
those years. The loans, which carry an interest rate of 8% per annum, are
convertible into equity at Schering AG's option under certain circumstances.
Principal and interest payments are deferred until maturity of the loans in
April 2004.
 
  In addition, Schering AG made research payments of $1.5 million in 1997 and
$2.0 million in 1998 and, provided that the collaboration is continued, will
make research payments of $2 million a year through 2001. All payments are
subject to some restrictions, including receipt of third party consents. Upon
payment of termination fees to us, the research collaboration may be terminated
at Schering AG's option at any time.
 
  Atugen Transaction. In 1998, we and other investors formed Atugen. Financing
for Atugen was accomplished through a combination of venture capital, an
investment by us and German government grants and loans. We contributed $2.0
million in cash to Atugen. On December 31, 1998, we owned a 49.5% equity
interest in Atugen. All five of our executive officers and two of our employees
received shares of Atugen's common stock in the formation at no cost to them,
for which we will receive a one-time compensation expense of approximately
$81,000. Currently, these seven people hold 5.5% of Atugen's common stock.
 
  As part of the formation, Atugen received exclusive royalty-free licenses to
our extensive patents and technologies for target validation and discovery. We
will receive a one-time $2.0 million up-front license payment in 1999. We also
will be compensated for providing management and other services to Atugen under
the terms of a services agreement.
 
                                       51
<PAGE>
 
                             PRINCIPAL STOCKHOLDERS
 
  The following table summarizes information regarding the beneficial ownership
of our outstanding securities as of March 15, 1999 (which includes shares that
may be acquired on the exercise of stock options vested or warrants exercisable
through May 15, 1999), by:
 
  . each person or group that we know owns more than 5% of the outstanding
    shares of common stock,
 
  . each of our directors,
 
  . each Named Executive Officer listed in the Summary Compensation Table,
    and
 
  . all of our directors and executive officers as a group.
 
  Beneficial ownership is determined in accordance with rules of the SEC and
includes shares over which the indicated beneficial owner exercises voting
and/or investment power. Shares of common stock subject to options or warrants
currently exercisable or exercisable within 60 days are deemed outstanding for
computing the percentage ownership of the person holding the options but are
not deemed outstanding for computing the percentage ownership of any other
person. Except as otherwise indicated in the footnotes to this table, we
believe that each stockholder identified in the table has sole voting and
investment power with respect to all shares listed opposite their names. Unless
otherwise indicated, the following officers, directors and stockholders can be
reached at the principal offices of Ribozyme Pharmaceuticals.
 
<TABLE>
<CAPTION>
                                                         Percentage of
                                                      Shares Outstanding
                                                      ----------------------
                                    Number of Shares   Before        After
    Name and Address               Beneficially Owned Offering     Offering
    ----------------               ------------------ ---------    ---------
<S>                                <C>                <C>          <C>
Schering Berlin Venture
 Corporation......................      1,778,727(1)         17.3%        14.7%
  3400 Change Bridge Road
  Monteville, New Jersey 07045
 
Chiron Corporation................      1,063,868(2)         11.1%         9.3%
  4560 Horton Street
  Emeryville, California 94608
 
International Biotechnology Trust
 plc..............................      1,012,633            11.0%         9.2%
  c/o Rothschild Asset Management,
   Ltd.
  Five Arrows House
  St. Swithin's Lane
  London EC4N 8NR England
 
Ralph E. Christoffersen, Ph.D. ...
 .                                        159,434(3)          1.7%         1.4%
 
Jeremy L. Curnock Cook............      1,017,633(4)         11.1%         9.3%
 
Anthony B. Evnin, Ph.D. ..........        320,773(5)          3.5%         2.9%
 
David Ichikawa....................              0(6)            0%           0%
 
David T. Morgenthaler.............        377,874(7)          4.1%         3.4%
 
Anders P. Wiklund.................          8,733(8)            *            *
 
Lawrence E. Bullock...............         29,606(9)            *            *
 
Alene Holzman.....................        15,799(10)            *            *
 
Thomas H. Rossing, M.D. ..........         9,899(11)            *            *
 
Nassim Usman, Ph.D................        30,746(12)            *            *
 
Executive officers and directors
 as a group (10 persons)..........     1,970,497(13)         21.1%        17.7%
</TABLE>
- --------
  * Less than 1%.
 
                                       52
<PAGE>
 
 (1) Includes 1,100,844 shares convertible from outstanding debt assuming a
     conversion price of $4.88 per share.
 (2) Includes 444,444 shares issuable upon exercise of warrants.
 (3)  Includes options to purchase 69,706 shares.
 (4) Includes options to purchase 5,000 shares and 1,012,633 shares held by the
     International Biotechnology Trust plc, for which Rothschild Asset
     Management, Ltd. ("Rothschild") acts as investment advisor. Mr. Cook is a
     director of Rothschild but disclaims beneficial ownership of these shares.
 (5) Includes options to purchase 5,000 shares, 218,022 shares held by Venrock
     Associates and 97,751 shares held by Venrock Associates II, L.P. Mr. Evnin
     is a general partner of both partnerships and disclaims beneficial
     ownership of these shares except to the extent of his general partnership
     interests.
 (6) Excludes 1,063,868 shares held by Chiron. Mr. Ichikawa is employed by
     Chiron and disclaims beneficial ownership of those shares.
 (7) Includes options to purchase 5,000 shares, 362,874 shares held by
     Morgenthaler Venture Partners III and 10,000 shares held by Morgenthaler
     Family Partnership. Mr. Morgenthaler is a general partner of both
     partnerships and disclaims beneficial ownership of these shares except to
     the extent of his general partnership interests.
 (8) Includes options to purchase 8,733 shares.
 (9) Includes options to purchase 21,180 shares.
(10) Includes options to purchase 12,000 shares.
(11) Includes options to purchase 9,000 shares.
(12) Includes options to purchase 28,265 shares and 532 shares owned by Dr.
     Usman's spouse to which Dr. Usman disclaims beneficial ownership.
(13) Includes options to purchase 163,884 shares.
 
                                       53
<PAGE>
 
                          DESCRIPTION OF CAPITAL STOCK
 
  Our Certificate of Incorporation provides for authorized capital stock of
25,000,000 consisting of 20,000,000 shares of common stock, par value $0.01 per
share, and 5,000,000 shares of preferred stock, par value $0.01 per share. The
following summary of material provisions of our common stock and preferred
stock is not complete and may not contain all the information you should
consider before investing in the common stock. You should carefully read our
Certificate of Incorporation which is filed as an exhibit to the registration
statement of which this prospectus is a part.
 
Common Stock
 
  Holders of common stock are entitled to one vote per share in the election of
directors and on all other matters on which stockholders are entitled or
permitted to vote. Holders of common stock are not entitled to cumulative
voting rights. Therefore, holders of a majority of the shares voting for the
election of directors can elect all the directors. Subject to the terms of any
outstanding series of preferred stock, the holders of common stock are entitled
to dividends in amounts and at times as may be declared by the Board of
Directors out of funds legally available therefor. See "Dividend Policy." Upon
liquidation or dissolution, holders of common stock are entitled to share
ratably in all net assets available for distribution to stockholders after
payment of any liquidation preferences to holders of preferred stock. Holders
of common stock have no redemption, conversion or preemptive rights.
 
Warrants
 
  As of March 15, 1999, we had warrants outstanding to purchase an aggregate of
487,458 shares (subject to adjustment) of common stock as follows:
 
<TABLE>
<CAPTION>
            Shares                Exercise Price                           Expiration Date
            ------                --------------                           ---------------
            <S>                   <C>                                      <C>
              9,523                   $15.75                                  10-01-00
              1,270                   $15.75                                       N/A*
             11,111                   $40.50                                  12-28-01
             16,666                   $22.50                                  09-01-03
              2,222                   $22.50                                  12-29-05
            444,444                   $22.50                                  04-17-06
              2,222                   $22.50                                  04-17-06
</TABLE>
- --------
* These warrants are redeemable at our option at any time upon 15 days' notice
  for an aggregate price of $200.
 
Preferred Stock
 
  The Board of Directors has the authority to issue up to 5,000,000 shares of
preferred stock and to fix the price, rights, preferences, privileges and
restrictions, including voting rights, of those shares without any further vote
or action by the stockholders. The rights of the holders of our common stock
will be subject to, and may be adversely affected by, the rights of the holders
of any preferred stock that we may issue in the future. The issuance of
preferred stock, while providing desirable flexibility in connection with
possible acquisitions and other corporate purposes, may have the effect of
delaying, deferring or preventing a change in control of Ribozyme
Pharmaceuticals, may discourage bids for our common stock at a premium over the
market price of the common stock and may adversely affect the market price of
and the voting and other rights of the holders of the common stock. We have no
present plans to issue shares of preferred stock.
 
Convertible Debt
 
  As of March 15, 1999, there were 1,100,844 shares of common stock issuable
upon conversion of the outstanding notes payable to Schering AG, assuming
amounts of $5,372,117 and a conversion price of $4.88 per share based on the
closing price of our common stock on March 15, 1999. Schering AG may convert
the note into shares of common stock at any time.
 
                                       54
<PAGE>
 
Delaware Anti-Takeover Law and Charter Provisions
 
  Provisions of our Certificate of Incorporation and Bylaws are intended to
enhance continuity and stability in our Board of Directors and in our policies,
but might have the effect of delaying or preventing a change in control of
Ribozyme Pharmaceuticals and may make more difficult the removal of incumbent
management even if the transactions could be beneficial to the interests of
stockholders. A summary description of these provisions is below:
 
    Authority to Issue Preferred Stock. The Certificate of Incorporation
  authorizes the Board, without stockholder approval, to establish and to
  issue shares of one or more series of preferred stock, each series having
  the voting rights, divided rates, liquidation, redemption, conversion and
  other rights as may be fixed by the Board.
 
    Stockholder Actions and Meetings. The Bylaws direct that special meetings
  of the stockholders may only be called by a majority of the members of the
  Board of Directors, the Chairman of the Board of Directors, the President
  or the holders of not less than 10% of the total voting power of all shares
  of our capital stock entitled to vote in the election of directors. The
  Bylaws further provide that stockholders' nominations to the Board of
  Directors and other stockholder business proposed to be transacted at
  stockholder meetings must be timely received by us in a proper written form
  which meets the prescribed content requirements.
 
    Limitation of Director Liability. Section 102(b)(7) of the Delaware
  General Corporation Law ("DGCL") authorizes corporations to limit or
  eliminate the personal liability of directors to corporations and their
  stockholders for monetary damages for breach of directors' fiduciary duty
  of care. Although Section 102(b) does not change directors' duty of care it
  enables corporations to limit available relief to equitable remedies such
  as injunction or rescission. Our Certificate of Incorporation limits the
  liability of directors to the company or its stockholders (in their
  capacity as directors but not in their capacity as officers) to the fullest
  extent permitted by Section 102(b). Specifically, our directors will not be
  personally liable for monetary damages for breach of a director's fiduciary
  duty as a director, except for liability:
 
    . for any breach of the director's duty of loyalty to us or our
      stockholders,
 
    . for acts or omissions not in good faith or which involve intentional
      misconduct or a knowing violation of law,
 
    . for unlawful payments of dividends or unlawful stock repurchases or
      redemptions as provided in Section 174 of the DGCL, or
 
    . for any transaction from which the director derived an improper
      personal benefit.
 
    Indemnification. To the maximum extent permitted by law, our Bylaws
  provide for mandatory indemnification of directors and permit
  indemnification of our officers, employees and agents against all expense,
  liability and loss to which they may become subject or which they may incur
  as a result of being or having been our director, officer, employee or
  agent. In addition, we must advance or reimburse directors, and may advance
  or reimburse officers, employees and agents for expenses incurred by them
  as a result of indemnifiable claims.
 
    Section 203 of the DGCL generally provides that a stockholder acquiring
  more than 15% of the outstanding voting stock of a corporation subject to
  the statute but less than 85% of the outstanding voting stock may not
  engage in some business combinations with the corporation for a period of
  three years after the date on which the stockholder became an interested
  stockholder unless:
 
    . prior to this date, the corporation's Board of Directors approved
      either the business combination or the transaction in which the
      stockholder became an interested stockholder, or
 
    . the business combination is approved by the corporation's Board of
      Directors and authorized at a stockholders' meeting by a vote of at
      least two-thirds of the corporation's outstanding voting stock not
      owned by the interested stockholder.
 
                                       55
<PAGE>
 
  Under Section 203, these restrictions will not apply to some business
combinations proposed by an interested stockholder following the earlier of the
announcement or notification of a particular extraordinary transaction
involving the corporation and a person who was not an interested stockholder
during the previous three years or who became an interested stockholder with
the approval of the corporation's Board of Directors, if the extraordinary
transaction is approved or not opposed by a majority of the directors who were
directors prior to any person becoming an interested stockholder during the
previous three years or were recommended for election or elected to succeed
those directors by a majority of those directors.
 
  Section 203 defines the term "business combination" to encompass a wide
variety of transactions with or caused by an interested stockholder, including
transactions in which the interested stockholder receives or could receive a
benefit on other than a pro rata basis with other stockholders, such as
mergers, asset sales, issuances of additional shares to the interested
stockholder, transactions with the corporation which increase the proportionate
interest in the corporation directly or indirectly owned by the interested
stockholder or transactions in which the interested stockholder receives other
benefits.
 
  The provisions of Section 203, together with the ability of our Board of
Directors to issue preferred stock without further stockholder action, could
delay or frustrate the removal of incumbent directors or a change in control of
Ribozyme Pharmaceuticals. The provisions also could discourage, impede or
prevent a merger, tender offer or proxy contest, even if this event would be
favorable to the interests of stockholders. Our stockholders, by adopting an
amendment to the Certificate of Incorporation or Bylaws, may elect not to be
governed by Section 203 effective 12 months after adoption. Neither our
Certificate of Incorporation nor Bylaws currently exclude us from the
restrictions imposed by Section 203.
 
Registration Rights
 
  As of March 15, 1999, the holders of approximately 677,883 shares of common
stock (the "Registrable Shares") are entitled to rights with respect to the
registration of their shares for offer and sale to the public under the
Securities Act. Under these provisions, holders of Registrable Shares may
request that we file up to two registration statements under the Securities Act
to register such shares. We may also be required to effect an unlimited number
of registrations on Form S-3. Further, whenever we propose to register any of
our shares under the Securities Act, we must allow the holders to include all
Registrable Shares to be included in the registration, subject to limitations.
We are required to bear all expenses (except underwriting discounts, selling
commissions and stock transfer taxes) of all registrations.
 
  Holders of warrants that are exercisable for 487,458 shares of our common
stock have the same registration rights for these shares when they are issued.
 
Transfer Agent
 
  The transfer agent and registrar for the common stock is American Stock
Transfer & Trust Company, New York, New York.
 
                                       56
<PAGE>
 
                              PLAN OF DISTRIBUTION
 
  We will enter into a placement agency agreement with Hambrecht & Quist LLC,
pursuant to which Hambrecht & Quist LLC will agree to act as placement agent in
connection with the offering. Hambrecht & Quist LLC will use its best efforts
to introduce Ribozyme Pharmaceuticals to selected institutional and accredited
investors who will purchase the shares. Hambrecht & Quist LLC has no obligation
to buy from us any of the shares.
 
  Hambrecht & Quist LLC will solicit indications of interest from investors for
the full amount of the offering. We will not request effectiveness until
Hambrecht & Quist LLC has informed us that it has received indications of
interest for the full amount of the offering. Investor funds will not be
accepted until the registration statement is declared effective.
 
  All investor funds will be deposited into an escrow account set up at
Citibank, N.A. for the benefit of the investors. Citibank, N.A., acting as
escrow agent, will invest all funds it receives in accordance with Rule 15c2-4
under the Exchange Act of 1934, as amended. Any interest collected on the funds
will be returned to Ribozyme Pharmaceuticals and investors on the closing date.
Before the closing date, Citibank, N.A. will notify Ribozyme Pharmaceuticals
and Hambrecht & Quist LLC that all of the funds to pay for the shares have been
received. We will deposit the shares with the Depository Trust Company upon
receiving a notice from Citibank, N.A. The shares will then be credited to the
respective accounts of the investors.
 
  If funds are not received for all of the shares being offered, then all funds
that were deposited into escrow will be returned to investors and the offering
will terminate.
 
  We have agreed to indemnify Hambrecht & Quist LLC and other persons against
some liabilities under the Securities Act. Hambrecht & Quist LLC has informed
us that it will not engage in overallotment, stabilizing transactions or
syndicate covering transactions in connection with the offering.
 
  We have agreed to pay Hambrecht & Quist LLC a fee equal to 8% of the proceeds
of this offering; provided, however, that we will not be obligated to pay
Hambrecht & Quist LLC a fee in respect of the sale of any shares offered hereby
to certain specified investors. We also agreed to reimburse Hambrecht & Quist
LLC for up to $150,000 for expenses that it incurs in connection with the
offering.
 
  We have agreed not to issue, and our directors and officers have also agreed
that they will not, directly or indirectly, offer, sell or otherwise dispose of
or arrange to dispose of any shares of common stock or any securities
convertible into or exercisable for, or any rights to purchase or acquire, our
common stock, for a period of 90 days after the date of the prospectus without
Hambrecht & Quist LLC's prior consent.
 
  For a period of 18 months from the date of this prospectus, we have granted
Hambrecht & Quist LLC (provided this offering is completed) the right to
provide us with investment banking services on an exclusive basis in all
matters for which we seek such services, with certain exceptions. Furthermore,
we have agreed that, if within 18 months after the termination of Hambrecht &
Quist LLC's engagement, we sell shares of our common stock to investors
previously identified and/or contacted by Hambrecht & Quist LLC, then we will
pay Hambrecht & Quist LLC, at the time of each such sale, an amount equal to
the placement agency fee described above with respect our gross proceeds from
each such sale.
 
  Affiliates of Hambrecht & Quist LLC own 16,666 warrants to purchase our
common stock at an exercise price of $9.00.
 
                                 LEGAL MATTERS
 
  The validity of the common stock offered by this prospectus will be passed
upon for Ribozyme Pharmaceuticals by Rothgerber Johnson & Lyons, LLP, Denver,
Colorado. Legal matters in connection with this offering will be passed upon
for Hambrecht & Quist LLC by Stroock & Stroock & Lavan LLP, New York, New York.
 
 
                                       57
<PAGE>
 
                                    EXPERTS
 
  The financial statements of Ribozyme Pharmaceuticals at December 31, 1998 and
1997, and for each of the three years in the period ended December 31, 1998,
appearing in this prospectus and Registration Statement have been audited by
Ernst & Young LLP, independent auditors, as set forth in their report thereon
appearing elsewhere herein, and are included in reliance upon such report given
on the authority of such firm as experts in accounting and auditing.
 
                             ADDITIONAL INFORMATION
 
  Ribozyme Pharmaceuticals is subject to the informational requirements of the
Securities Exchange Act, and, accordingly, files reports, proxy statements and
other information with the SEC. These reports, proxy statements and other
information filed with the SEC are available for inspection and copying at the
public reference facilities maintained by the SEC at Judiciary Plaza, 450 Fifth
Street, N.W., Washington, DC 20549, and at the SEC's Regional Offices: 500 West
Madison Street, Suite 1400, Chicago, IL 60661 and 7 World Trade Center, New
York, NY 10048. The public may obtain information on the operation of the
public reference room by calling the SEC at 1-800-SEC-0330. The SEC maintains a
site on the World Wide Web at "http://www.sec.gov" that contains reports, proxy
statements and other information regarding registrants that file electronically
with the SEC. In addition, these materials and other information concerning
Ribozyme Pharmaceuticals can be inspected at the National Association of
Securities Dealers, Inc., 1735 K Street, N.W., Washington, DC 20006.
 
  We have filed with the SEC a registration statement on Form S-1 under the
Securities Act to register with the SEC the securities we are offering with
this prospectus. This prospectus is a part of that registration statement. As
allowed by SEC rules, this prospectus does not contain all of the information
contained in the registration statement or the exhibits to that registration
statement. For further information with respect to Ribozyme Pharmaceuticals and
the common stock we are offering, you should refer to the registration
statement. Statements in this prospectus concerning the contents of any
contract or other document are not necessarily complete. You should refer to
the copy of the contract or other document filed with the SEC as an exhibit to
the registration statement. With respect to each document filed with the SEC as
an exhibit to the registration statement, you should refer to the exhibit for a
more complete description of the matter involved.
 
                                       58
<PAGE>
 
                         INDEX TO FINANCIAL STATEMENTS
 
<TABLE>
<CAPTION>
                                                                            Page
                                                                            ----
<S>                                                                         <C>
Report of Independent Auditors............................................. F-2
Balance Sheets............................................................. F-3
Statements of Operations................................................... F-4
Statements of Stockholders' Equity......................................... F-5
Statements of Cash Flows................................................... F-6
Notes to Financial Statements.............................................. F-7
</TABLE>
 
                                      F-1
<PAGE>
 
                         REPORT OF INDEPENDENT AUDITORS
 
To the Stockholders and Board of Directors
 Ribozyme Pharmaceuticals, Inc.
 
  We have audited the accompanying balance sheets of Ribozyme Pharmaceuticals,
Inc. ("the Company") as of December 31, 1998 and 1997, and the related
statements of operations, stockholders' equity, and cashflows for each of the
three years in the period ended December 31, 1998. These financial statements
are the responsibility of the Company's management. Our responsibility is to
express an opinion on these financial statements based on our audits.
 
  We conducted our audits in accordance with generally accepted auditing
standards. Those standards require that we plan and perform the audit to obtain
reasonable assurance about whether the financial statements are free of
material misstatement. An audit includes examining, on a test basis, evidence
supporting the amounts and disclosures in the financial statements. An audit
also includes assessing the accounting principles used and significant
estimates made by management, as well as evaluating the overall financial
statement presentation. We believe that our audits provide a reasonable basis
for our opinion.
 
  In our opinion, the financial statements referred to above present fairly, in
all material respects, the financial position of Ribozyme Pharmaceuticals, Inc.
at December 31, 1998 and 1997, and the results of its operations and its cash
flows for each of the three years in the period ended December 31, 1998 in
conformity with generally accepted accounting principles.
 
/s/ ERNST & YOUNG LLP
 
Denver, Colorado
February 16, 1999
 
                                      F-2
<PAGE>
 
                         RIBOZYME PHARMACEUTICALS, INC.
 
                                 BALANCE SHEETS
 
<TABLE>
<CAPTION>
                                                           December 31
                                                    --------------------------
                                                        1998          1997
                                                    ------------  ------------
<S>                                                 <C>           <C>
                      ASSETS
Current assets:
  Cash and cash equivalents........................ $  6,511,512  $ 15,302,775
  Securities available-for-sale....................          --        799,616
  Restricted cash..................................          --         52,669
  Accounts receivable..............................    3,898,581         8,044
  Notes receivable--related parties................      118,466       127,341
  Prepaid expenses and other.......................       84,766       175,549
                                                    ------------  ------------
    Total current assets...........................   10,613,325    16,465,994
Property, plant, and equipment:
  Machinery and equipment..........................    6,478,223     5,673,115
  Leasehold improvements...........................    3,582,664     3,567,106
  Office furniture and equipment...................    1,065,049     1,007,104
                                                    ------------  ------------
                                                      11,125,936    10,247,325
  Accumulated depreciation.........................   (6,903,742)   (5,290,160)
                                                    ------------  ------------
                                                       4,222,194     4,957,165
Notes receivable--related parties..................      162,466       231,932
Deferred patent costs, net of accumulated
 amortization (1998--$271,328;
 1997--$171,039)...................................    2,905,575     2,510,705
Investment in Atugen Biotechnology GmbH............      860,216           --
Other assets.......................................      460,515       684,245
                                                    ------------  ------------
Total assets....................................... $ 19,224,291  $ 24,850,041
                                                    ============  ============
       LIABILITIES AND STOCKHOLDERS' EQUITY
Current liabilities:
  Accounts payable--trade.......................... $    750,514  $    904,681
  Accrued liabilities..............................      396,143       245,956
  Deferred revenue--current portion................      400,000           --
  Current portion of long-term debt................      498,179     2,077,771
                                                    ------------  ------------
    Total current liabilities......................    2,044,836     3,228,408
Deferred revenue--long-term portion................    1,600,000           --
Long-term debt.....................................      200,455       698,633
Convertible debt...................................    4,344,612     2,052,889
Commitments
Stockholders' equity:
  Voting convertible preferred stock, $.01 par
   value; 5,000,000 shares authorized; no shares
   outstanding.....................................          --            --
  Common stock, $.01 par value; 20,000,000 shares
   authorized; 9,181,455 and 8,607,022 shares
   issued and outstanding in 1998 and 1997,
   respectively....................................       91,815        86,070
  Additional paid-in capital.......................   84,434,213    81,424,341
  Accumulated deficit..............................  (73,422,491)  (62,504,924)
  Unrealized loss on securities available-for-
   sale............................................          --         (5,064)
  Deferred compensation............................      (69,149)     (130,312)
                                                    ------------  ------------
    Total stockholders' equity.....................   11,034,388    18,870,111
                                                    ------------  ------------
Total liabilities and stockholders' equity......... $ 19,224,291  $ 24,850,041
                                                    ============  ============
</TABLE>
 
                            See accompanying notes.
 
                                      F-3
<PAGE>
 
                         RIBOZYME PHARMACEUTICALS, INC.
 
                            STATEMENTS OF OPERATIONS
 
<TABLE>
<CAPTION>
                                             Year ended December 31
                                     ----------------------------------------
                                         1998          1997          1996
                                     ------------  ------------  ------------
<S>                                  <C>           <C>           <C>
Revenues:
  Collaborative agreements.......... $  8,962,813  $  1,976,500  $    759,122
  Grant and other income............       25,045         6,642        13,981
  Interest income...................      634,569       794,968       936,397
                                     ------------  ------------  ------------
    Total revenues..................    9,622,427     2,778,110     1,709,500
Expenses:
  Research and development..........   16,941,652    15,169,731    14,188,836
  General and administrative........    1,812,860     1,886,108     1,943,583
  Interest expense..................      703,711       844,365       844,661
                                     ------------  ------------  ------------
    Total expenses..................   19,458,223    17,900,204    16,977,080
Equity in loss of unconsolidated
 affiliate..........................    1,081,771           --            --
                                     ------------  ------------  ------------
Net loss............................ $(10,917,567) $(15,122,094) $(15,267,580)
                                     ============  ============  ============
Net loss per share.................. $      (1.22) $      (2.04) $      (2.61)
Shares used in computing net loss
 per share..........................    8,978,355     7,419,650     5,844,987
</TABLE>
 
 
 
                            See accompanying notes.
 
                                      F-4
<PAGE>
 
                         RIBOZYME PHARMACEUTICALS, INC.
 
                       STATEMENTS OF STOCKHOLDERS' EQUITY
 
<TABLE>
<CAPTION>
                     Common Stock        Preferred Stock     Additional                 Unrealized
                  -------------------  --------------------    Paid-In    Accumulated    Loss on     Deferred
                    Shares    Amount     Shares     Amount     Capital      Deficit     Securities Compensation    Total
                  ----------  -------  ----------  --------  -----------  ------------  ---------- ------------ ------------
<S>               <C>         <C>      <C>         <C>       <C>          <C>           <C>        <C>          <C>
Balance at
 December 31,
 1995...........     982,501  $ 9,825   2,231,960  $ 22,321  $40,725,061  $(32,115,250)   $  --     $(163,989)  $  8,477,968
Conversion of
 preferred stock
 in connection
 with initial
 public
 offering.......   2,231,960   22,321  (2,231,960)  (22,321)         --            --        --           --             --
Issuance of
 common stock
 relating to
 certain
 antidilution
 rights in
 connection with
 initial public
 offering.......     841,279    8,412         --        --        (8,412)          --        --           --             --
Issuance of
 common stock
 for cash
- --initial public
 offering, net
 of issuance
 costs of
 $816,990.......   2,300,000   23,000         --        --    20,550,010           --        --           --      20,573,010
Issuance of
 common stock
 for cash
- --other.........     510,829    5,108         --        --     3,762,048           --        --           --       3,767,156
Payment on
 warrants.......         --       --          --        --     1,800,000           --        --           --       1,800,000
Issuance of
 common stock
 for employee
 bonus..........      18,810      188         --        --       187,912           --        --           --         188,100
Issuance of
 common stock
 under employee
 stock purchase
 plan...........      15,842      158         --        --       131,172           --        --           --         131,330
Compensation for
 issuance of
 common stock
 and options....         --       --          --        --       162,530           --        --       (24,913)       137,617
Issuance of
 common stock
 for services...       2,083       21         --        --        23,413           --        --           --          23,434
Issuance of
 common stock
 relating to
 certain royalty
 agreements.....      45,000      450         --        --       539,550           --        --           --         540,000
Unrealized loss
 on securities
 available-for-
 sale...........         --       --          --        --           --            --     (9,214)         --          (9,214)
Net loss........         --       --          --        --           --    (15,267,580)      --           --     (15,267,580)
                                                                                                                ------------
Comprehensive
 income/(loss)..                                                                                                 (15,276,794)
                  ----------  -------  ----------  --------  -----------  ------------    ------    ---------   ------------
Balance at
 December 31,
 1996...........   6,948,304   69,483         --        --    67,873,284   (47,382,830)   (9,214)    (188,902)    20,361,821
Issuance of
 common stock
 for cash
- --public
 offering, net
 of issuance
 costs of
 $634,796.......   1,400,000   14,000         --        --    10,551,204           --        --           --      10,565,204
Issuance of
 common stock
 for cash.......     212,766    2,128         --        --     2,497,872           --        --           --       2,500,000
Issuance of
 common stock
 for cash
- --under stock
 option plan....      30,001      300         --        --        51,404           --        --           --          51,704
Issuance of
 common stock
 under employee
 stock purchase
 plan...........      29,875      298         --        --       310,303           --        --           --         310,601
Issuance of
 common stock
 under 401(k)
 plan-stock
 match..........      19,409      194         --        --       155,078           --        --           --         155,272
Cancellation of
 common stock
 relating to
 license
 agreement......     (33,333)    (333)        --        --           333           --        --           --             --
Compensation for
 issuance of
 common stock
 and options....         --       --          --        --       (15,137)          --        --        58,590         43,453
Net loss........         --       --          --        --           --    (15,122,094)      --           --     (15,122,094)
Change in
 unrealized loss
 on securities
 available-for-
 sale...........         --       --          --        --           --            --      4,150          --           4,150
                                                                                                                ------------
Comprehensive
 income/(loss)..                                                                                                 (15,117,944)
                  ----------  -------  ----------  --------  -----------  ------------    ------    ---------   ------------
Balance at
 December 31,
 1997...........   8,607,022   86,070         --        --    81,424,341   (62,504,924)   (5,064)    (130,312)    18,870,111
Issuance of
 common stock
 for cash.......     465,117    4,651         --        --     2,495,349           --        --           --       2,500,000
Issuance of
 common stock
 for cash
- --under stock
 option plan....      21,689      217         --        --        45,545           --        --           --          45,762
Issuance of
 common stock
 under employee
 stock purchase
 plan...........      54,115      542         --        --       307,608           --        --           --         308,150
Issuance of
 common stock
 under 401(k)
 plan-stock
 match..........      33,512      335         --        --       190,371           --        --           --         190,706
Compensation for
 issuance of
 common stock
 and options....         --       --          --        --       (29,001)          --        --        61,163         32,162
Change in
 unrealized loss
 on securities
 available-for-
 sale...........         --       --          --        --           --            --      5,064          --           5,064
Net loss........         --       --          --        --           --    (10,917,567)      --           --     (10,917,567)
                                                                                                                ------------
Comprehensive
 income/(loss)..                                                                                                 (10,912,503)
                  ----------  -------  ----------  --------  -----------  ------------    ------    ---------   ------------
Balance at
 December 31,
 1998...........  $9,181,455  $91,815         --   $     --  $84,434,213  $(73,422,491)   $   --    $ (69,149)  $ 11,034,388
                  ==========  =======  ==========  ========  ===========  ============    ======    =========   ============
</TABLE>
 
                            See accompanying notes.
 
                                      F-5
<PAGE>
 
                         RIBOZYME PHARMACEUTICALS, INC.
 
                            STATEMENTS OF CASH FLOWS
 
<TABLE>
<CAPTION>
                                               Year ended December 31
                                       ----------------------------------------
                                           1998          1997          1996
                                       ------------  ------------  ------------
<S>                                    <C>           <C>           <C>
Operating activities
 Net loss............................  $(10,917,567) $(15,122,094) $(15,267,580)
 Adjustments to reconcile net loss to
  net cash used by operating
  activities:
  Depreciation.......................     1,670,825     1,665,044     1,648,435
  Amortization.......................        92,107        74,051        40,747
  Equity in loss of unconsolidated
   affiliate.........................     1,081,771           --            --
  Write-off of deferred patent
   costs.............................        11,836        93,557           --
  Compensation related to common
   stock and options.................       278,150       280,177       889,151
  Compensation related to issuance of
   affiliate's stock.................        81,000           --            --
  Compensation for forgiveness of
   notes receivable--related
   parties...........................       126,466        92,466        92,466
  Loss on sale of securities
   available-for-sale................           --            --         13,140
  Gain on sale of investment in
   corporate partner.................       (25,045)          --            --
  Loss (gain) on disposal of
   equipment.........................           541        (1,126)          --
  Accrued interest included in
   convertible debt..................       291,723        52,889           --
  Changes in operating assets and
   liabilities:
    Accounts receivable..............    (3,890,537)       65,978       (55,962)
    Prepaid expenses and other.......        90,783        38,168       (55,882)
    Other assets.....................       (18,087)     (277,807)      (29,260)
    Accounts payable--trade..........      (154,167)      351,777         3,866
    Accrued liabilities..............       150,186        29,340       130,226
    Deferred revenue.................     2,000,000
    Deferred gain....................           --         (5,515)      (27,130)
                                       ------------  ------------  ------------
Net cash used by operating
 activities..........................    (9,130,015)  (12,663,095)  (12,617,783)
Investing activities
Additions to property, plant, and
 equipment...........................     (936,395)    (2,213,311)   (1,541,412)
Additions to deferred patent costs...      (506,994)     (660,581)     (558,895)
Sale (purchase) of investment in
 corporate partner...................       275,045           --       (250,000)
Proceeds from sale of equipment......           --          2,600           --
Net sales of securities available-
 for-sale............................       804,680     3,748,005    (1,058,590)
Investment in unconsolidated
 affiliate...........................    (2,022,987)          --            --
Transfer of restricted cash..........        52,669       242,733       914,528
Loan repayments--related parties.....         1,875         3,000        56,625
Loan advances--related parties.......       (50,000)     (175,000)     (156,500)
                                       ------------  ------------  ------------
Net cash (used) provided by investing
 activities..........................    (2,382,107)      947,446    (2,594,244)
Financing activities
Net proceeds from sale of shares of
 common stock and of warrants........     2,798,630    13,346,056    26,271,496
Payments under loan facilities.......    (2,077,771)   (1,480,677)   (1,316,027)
Borrowings under loan facilities.....     2,000,000     2,254,460     1,162,242
Payments on capital lease
 obligations.........................           --       (152,093)     (768,014)
                                       ------------  ------------  ------------
Net cash provided by financing
 activities..........................     2,720,859    13,967,746    25,349,697
                                       ------------  ------------  ------------
Net (decrease) increase in cash and
 cash equivalents....................    (8,791,263)    2,252,097    10,137,670
Cash and cash equivalents at
 beginning of year...................    15,302,775    13,050,678     2,913,008
                                       ------------  ------------  ------------
Cash and cash equivalents at end of
 year................................  $  6,511,512  $ 15,302,775  $ 13,050,678
                                       ============  ============  ============
</TABLE>
 
                            See accompanying notes.
 
                                      F-6
<PAGE>
 
                         RIBOZYME PHARMACEUTICALS, INC.
 
                         NOTES TO FINANCIAL STATEMENTS
 
                               December 31, 1998
 
1. Summary of Significant Accounting Policies
 
Description of Business
 
  Ribozyme Pharmaceuticals, Inc. ("RPI" or the "Company") was founded in 1992
to capitalize on the broad potential of ribozymes for use in the development of
human therapeutics and therapeutic target validation services. To date, the
Company has engaged in the research and development of its ribozyme technology
and has experienced significant operating losses in each fiscal year since
inception. The Company has not generated any revenue from the commercialization
of its ribozyme technology and it expects to continue to incur significant
operating losses over at least the next several years.
 
  During 1998, the Company formed Atugen Biotechnology GmbH ("Atugen"), a
German company located in Berlin. Atugen's primary goal is to utilize RPI's
proprietary ribozyme and related technologies and accelerate gene function
validation and discovery of human health therapeutic targets. Financing for
Atugen was accomplished through a combination of venture capital, an investment
by RPI and German government grants and loans. As part of the formation, Atugen
received exclusive licenses to RPI patents and technologies for target
validation and discovery. In addition, in 1998 Atugen acquired Transgenics
Berlin-Buch GmbH ("Transgenics") in exchange for Atugen common stock, which
allowed access to DNA "chip" technologies. As of December 31, 1998, the Company
owned 49.5% of the Atugen voting stock and accounts for its investment in
Atugen using the equity method. RPI plans to retain ownership in and have other
on-going business relationships with Atugen.
 
Capital Requirements and Management's Plans
 
  The Company incurred a net loss of $10,917,567 for the year ended December
31, 1998 and has a accumulated deficit of $73,422,491 at December 31, 1998.
 
  Development of the Company's products will require a commitment of
substantial additional funds to conduct the costly and time-consuming research,
preclinical and clinical testing necessary to bring its proposed products to
market and to establish manufacturing and marketing capabilities. The Company's
future capital requirements will depend on many factors, including, among
others, the progress of the Company's research, development and drug discovery
efforts, the ability of the Company to establish collaborative arrangements for
clinical testing, progress with preclinical studies and clinical trials, the
time and costs involved in obtaining regulatory approvals, the costs involved
in preparing, filing, prosecuting, maintaining, defending and enforcing patent
claims, competing technological and market developments, changes in the
Company's existing research relationships, determination as to the commercial
potential of the Company's potential products, effective commercialization
activities and arrangements, and the cost and availability of third-party
financing for capital expenditures.
 
Use of Estimates
 
  The preparation of financial statements in conformity with generally accepted
accounting principles requires management to make estimates and assumptions
that affect the reported amounts of assets and liabilities and disclosure of
contingent assets and liabilities at the date of the financial statements and
the reported amounts of revenues and expenses during the reporting period.
Actual results could differ from those estimates.
 
Net Loss Per Share
 
  In 1997, the Financial Accounting Standards Board (FASB) issued Statement No.
128, Earnings per Share (SFAS 128). SFAS 128 replaced the calculation of
primary and fully diluted earnings per share with
 
                                      F-7
<PAGE>
 
                         RIBOZYME PHARMACEUTICALS, INC.
 
                   NOTES TO FINANCIAL STATEMENTS--(Continued)
 
basic and diluted earnings per share. Unlike primary earnings per share, basic
earnings per share excludes any potentially dilutive securities. Diluted
earnings per share is very similar to the previously reported fully diluted
earnings per share. No restatement of prior periods is necessary as the
potentially dilutive securities have been excluded from the computation as
their effect is antidilutive.
 
  Prior to April 11, 1996, pursuant to Securities and Exchange Commission Staff
Accounting Bulletins and Staff Policy, all convertible securities issued prior
to the Company's initial public offering, even if antidilutive, have been
included in the basic loss per share calculation as if they were outstanding.
 
Cash and Cash Equivalents
 
  The Company considers all highly liquid investments purchased with a maturity
of three months or less to be cash equivalents. The Company's cash equivalents
are comprised of certificates of deposit, money market funds, and investment
securities with maturities of three months or less.
 
Property, Plant, and Equipment
 
  Property, plant, and equipment is stated at cost. Depreciation is computed by
the straight-line method over the estimated useful lives of the assets. Useful
lives of laboratory equipment and furniture are estimated at five years and all
computer equipment is estimated at three years. Leasehold improvements and
equipment subject to financing obligations are amortized on a straight-line
basis over the shorter of their estimated useful lives or the term of the
lease.
 
Deferred Patent Costs
 
  The Company capitalizes legal costs directly incurred in pursuing patent
applications as deferred patent costs. When such applications result in an
issued patent, the related costs are amortized over the remaining legal life of
the patents, using the straight-line method. On a quarterly basis, the Company
reviews its issued patents and pending patent applications, and if it
determines to abandon a patent application or that an issued patent no longer
has economic value, the unamortized balance in deferred patent costs relating
to that patent is immediately expensed.
 
  It is possible the above estimates of future economic life of the Company's
commercialization revenues, the amount of anticipated future commercialization
revenues, or both, will be reduced significantly in the near term due to
alternative technologies developed by other biotechnology or pharmaceutical
companies. As a result, the carrying amount of deferred patent costs may be
reduced in the future.
 
Revenue Recognition
 
  Revenues recognized under the Company's collaborative research agreements and
grants are recorded as earned ratably over the term of the agreements.
 
Research and Development Expenses
 
  Research and development costs are expensed as incurred.
 
New Accounting Pronouncements
 
  In 1997 the FASB issued Statement of Financial Accounting Standards No. 130
Reporting Comprehensive Income, and Statement of Financial Accounting Standards
No. 131, Disclosures About Segments of an Enterprise and Related Information,
both of which were adopted by the Company during
 
                                      F-8
<PAGE>
 
                         RIBOZYME PHARMACEUTICALS, INC.
 
                   NOTES TO FINANCIAL STATEMENTS--(Continued)
 
1998. As a result of the adoption of Statement 130, the Company has reported
comprehensive income (loss) as a component of the Statement of Stockholders'
Equity. There was no change in the Company's financial reporting as a result of
the adoption of Statement 131.
 
Reclassifications
 
  Certain amounts in the December 31, 1997 financial statements were
reclassified to conform with the December 31, 1998 presentation. These
reclassifications had no impact on the reported results of operations.
 
2. Securities Available-for-Sale
 
  Management has determined that at December 31, 1998 all marketable securities
held by the Company were cash and cash equivalents. At December 31, 1997
management determined that certain marketable securities held by the Company at
December 31, 1997 were available-for-sale. Securities available-for-sale are
carried at fair value, with unrealized gains and losses reported as a component
stockholders' equity. The amortized cost of debt securities in this category is
adjusted for amortization of premiums and accretion of discounts to maturity.
Such amortization is included in investment income. Realized gains and losses
and declines in value judged to be other-than-temporary on securities
available-for-sale are included in investment income. Interest and dividends on
securities available-for-sale are included in investment income. The cost of
securities sold is based on the specific identification method. There were no
gross realized gains or losses on sales of securities available-for-sale in
1998 or 1997.
 
3. Long-Term Debt
 
  Long-term debt as of December 31 consists of the following:
 
<TABLE>
<CAPTION>
                                                             1998       1997
                                                          ---------- ----------
   <S>                                                    <C>        <C>
   Equipment loan (I).................................... $      --  $  263,301
   Tenant interest loan (II).............................        --     496,066
   Tenant improvement and equipment loan (II)............        --     972,703
   Equipment loan (III)..................................    698,634  1,044,334
   Convertible debt (IV).................................  4,344,612  2,052,889
                                                          ---------- ----------
                                                          $5,043,246 $4,829,293
                                                          ========== ==========
</TABLE>
 
    I. During 1994, the Company obtained a tenant improvement loan of
  $1,000,000 for leasehold improvements and an equipment loan to purchase up
  to $1,500,000 of equipment. The interest rate on borrowings under these
  loan facilities was 10.00% at December 31, 1997. The agreement required
  monthly principal and interest payments through August 1998, at which time
  the loan was paid in full.
 
    II. In April 1995, the Company obtained a loan of $1,000,000
  collateralized by its tenant interest and certain existing leasehold
  improvements, and an additional loan to purchase up to $1,500,000 of
  leasehold improvements and equipment. The terms of the agreement call for
  fixed monthly principal and interest payments through October 1998,
  assuming the Company exercised a prepayment option. In December 1998, the
  Company exercised the prepayment option and paid off the loan at its
  carrying amount.
 
    III. In December 1995, the Company negotiated an additional equipment
  credit facility of $2,000,000 with a financial institution. The facility
  commitment was terminated on June 30, 1997. The agreement requires monthly
  principal and interest payments through April 2000, at which time a final
  payment of $283,328 is due in full. The interest rate on these borrowings
  was 12% at December 31, 1998 and 1997.
 
    IV. In April 1997, the Company entered into a collaboration agreement
  with a corporate partner whereby, among other items, the Company may borrow
  from the partner up to $2.0 million annually for each of the next five
  years. The loans are collaterallized 50% by equipment purchases. The loans
 
                                      F-9
<PAGE>
 
                         RIBOZYME PHARMACEUTICALS, INC.
 
                   NOTES TO FINANCIAL STATEMENTS--(Continued)
 
  carry an interest rate of 8% per annum and under certain circumstances are
  convertible into equity at the option of the corporate partner. Principal
  and interest payments on the loans are deferred until maturity of the loans
  which is in April 2004. The collaboration and loan facility may be
  terminated at the option of the partner any time.
 
  Cash paid for interest for the years ended December 31, 1998, 1997 and 1996
was $411,988, $791,476 and $844,661, respectively. At December 31, 1998 the
carrying amounts of the Company's long-term debt approximates fair value as all
borrowings bear interest rates which are comparable to the current market rate
for such borrowings.
 
  All assets acquired under the above loan facilities represent collateral for
the amounts outstanding. In addition, the Company was required to maintain
minimum cash balances in the form of certificates of deposit with a financial
institution, in the amount of $0 and $52,669 at December 31, 1998 and 1997,
respectively. These amounts are presented as restricted cash in the
accompanying balance sheets.
 
  As of December 31, 1998, maturities of long-term debt are as follows:
 
<TABLE>
<CAPTION>
                                                                        Amount
                                                                      ----------
   <S>                                                                <C>
   1999.............................................................. $  498,179
   2000..............................................................    200,455
   2001..............................................................        --
   2002..............................................................        --
   2003..............................................................        --
   Thereafter........................................................  4,344,612
                                                                      ----------
                                                                      $5,043,246
                                                                      ==========
</TABLE>
 
4. Leases
 
  The Company leases office space under a noncancelable operating lease which
was extended until June 2007. Total rent expense, including miscellaneous
laboratory equipment rentals, was $493,188, $443,796 and $496,774 in 1998, 1997
and 1996 respectively.
 
  The Company's lease commitments at December 31, 1998 are as follows:
 
<TABLE>
<CAPTION>
                                                                      Operating
                                                                        Lease
                                                                      ----------
   <S>                                                                <C>
   1999.............................................................. $  478,516
   2000..............................................................    363,480
   2001..............................................................    363,480
   2002..............................................................    363,480
   2003..............................................................    363,480
   2004 and thereafter...............................................  1,272,180
                                                                      ----------
                                                                      $3,204,616
                                                                      ==========
</TABLE>
 
5. Stockholders' Equity
 
  In April 1996, the Company completed an initial public offering of its common
stock, whereby 2,300,000 shares of the Company's common stock were sold at
$10.00 per share, resulting in net proceeds of approximately $20.6 million. As
a result of the Company's initial public offering, all preferred shares
outstanding were converted into an aggregate of 2,231,960 shares of common
stock.
 
                                      F-10
<PAGE>
 
                         RIBOZYME PHARMACEUTICALS, INC.
 
                   NOTES TO FINANCIAL STATEMENTS--(Continued)
 
 
  Upon consummation of the initial public offering the Company sold 377,202
shares of common stock to Chiron Corporation ("Chiron") for $3,640,000.
Additionally, the Company received $1,800,000 from Chiron to complete the
purchase of warrants to purchase 444,444 shares of common stock, issued
concurrently with the IPO.
 
  The Company adopted an Employee Stock Purchase Plan (the "Purchase Plan"),
authorizing the issuance of 300,000 shares pursuant to purchase rights granted
to employees of the Company. The Purchase Plan provides a means by which
employees purchase common stock of the Company through payroll deductions. The
Purchase Plan is implemented by offerings of rights to eligible employees.
Generally, each offering is twenty-four months' duration with purchases
occurring on each October 31 and April 30 during each offering (except that
April 30, 1996 was not a purchase date). Common stock is purchased for accounts
of employees participating in the Purchase Plan at a price per share equal to
the lower of (i) 85% of the fair market value of a share of common stock on the
date of commencement of participation in the offering or (ii) 85% of the fair
market value of a share of common stock on the date of purchase. Generally all
regular employees, including executive officers, may participate in the
Purchase Plan and may authorize payroll deduction of up to 15% of their base
compensation for the purchase of stock under the plan. The Company's Board of
Directors has the authority to terminate the Purchase Plan at its discretion.
Shares are deemed issued for accounting purposes in the year the shares are
purchased.
 
  Pursuant to an antidilution agreement (the "Antidilution Agreement") with a
founder of the Company, the Company agreed to issue additional shares to this
individual so that he would maintain a 5% interest in the fully diluted equity
of the Company until the occurrence of one of several events, including the
Company's initial public offering. Accordingly, effective April 11, 1996,
115,506 shares were issued related to the Antidilution Agreement which
represented the founder's 5% interest in the Company. No additional rights
under the Antidilution Agreement exist.
 
  Below is a summary of common stock reserved by the Company at December 31,
1998 for issuance upon the exercise of the various options, warrants and the
401(k) and purchase plans.
 
<TABLE>
<CAPTION>
                                                                        Shares
                                                                       ---------
   <S>                                                                 <C>
   Stock option plans................................................. 1,479,173
   Employee stock purchase plan.......................................   200,168
   Employee 401(k) stock match........................................   247,079
   Warrants at $15.75 per share.......................................    10,793
   Warrants at $40.50 per share.......................................    11,111
   Warrants at $22.50 per share.......................................   465,554
                                                                       ---------
                                                                       2,413,878
                                                                       =========
</TABLE>
 
  The Company's ability to pay dividends is restricted by the terms of its
tenant improvement and equipment loan facility agreements.
 
6. Stock Option Plans
 
  The Company has established a Non-Qualified Stock Option Plan and an
Incentive Stock Option Plan (collectively, the "Plans"), under which it is
authorized to grant stock options to purchase up to 1,317,154 shares of the
Company's common stock to eligible employees, consultants, and other
individuals, as defined in the Plans. In May 1997, the Company's shareholders
approved an additional 350,000 shares of the Company's common stock to be
reserved for issuance pursuant to the Plans. Options to purchase the Company's
common stock are exercisable at a price as determined by the Board of Directors
at the time the
 
                                      F-11
<PAGE>
 
                         RIBOZYME PHARMACEUTICALS, INC.
 
                   NOTES TO FINANCIAL STATEMENTS--(Continued)
 
option is granted, which shall not be less than 100% of the fair market value
(110% in the case of 10 percent shareholders) at the date of grant. Vesting
rights are determined by the Board of Directors at the time the option is
granted and generally the options become exercisable at twenty percent at the
end of each of years one through five. If not exercised, the options expire
after ten years. The Board of Directors has also granted certain employees
options vesting upon achievement of certain contingent milestone events.
 
  During the third quarter of 1998, the Company offered a repricing of existing
stock options to all of its current employees. Pursuant to the offer, all non-
executive employees were allowed to exchange each existing stock option for a
newly priced stock option one for one, with the new stock options having an
exercise price equal to the current market price of the underlying common
stock. If exchanged, the vesting term would start over beginning on the date of
exchange. A similar offer was given to all executives, except the options were
exchanged at a one for .75 ratio. As a result of the offer, 890,921 options
were canceled and 747,060 options were granted, effective September 18, 1998.
 
  The Company has elected to follow Accounting Principles Board Opinion No. 25,
Accounting for Stock Issued to Employees (APB 25), and related Interpretations
in accounting for its employee stock options because, as discussed below, the
alternative fair value accounting provided for under FASB Statement of
Financial Accounting Standards No. 123, Accounting for Stock-Based Compensation
(SFAS 123), requires use of option valuation models that were not developed for
use in valuing employee stock options. Under APB 25, if the exercise price of
the Company's employee stock options equals the market price of the underlying
stock on the date of grant, no compensation expense is recognized. During 1998,
1997 and 1996, the Company recorded $32,162, $43,453 and $137,617,
respectively, of compensation relating to the grant of stock options and the
Antidilution Agreement, all of which relates to pre-IPO issuances which have
been deferred until vesting has been completed.
 
  Pro forma information regarding net income and earnings per share is required
by SFAS 123, which also requires that the information be determined as if the
Company has accounted for its employee stock options under the fair value
method of SFAS 123. The fair value for these options was estimated at the date
of grant using a Black-Scholes option pricing model with the following
weighted-average assumptions for 1998, 1997 and 1996, respectively: risk-free
interest rates of 4.7%, 6.4% and 6.3%; a dividend yield of 0%; volatility
factors of the expected market price of the Company's common stock of .967,
 .638 and .566; and a weighted-average expected life of the option of 6 years.
The weighted average fair value of stock options granted during 1998, 1997 and
1996 was $4.04, $5.88 and $6.59, respectively.
 
  The Black-Scholes option valuation model was developed for use in estimating
the fair value of traded options which have no vesting restrictions and are
fully transferable. In addition, option valuation models require the input of
highly subjective assumptions including the expected stock price volatility.
Because the Company's employee stock options have characteristics significantly
different from those of traded options, and because changes in the subjective
input assumptions can materially affect the fair value estimate, in
management's opinion, the existing models do not necessarily provide a reliable
single measure of the fair value of its employee stock options.
 
                                      F-12
<PAGE>
 
                         RIBOZYME PHARMACEUTICALS, INC.
 
                   NOTES TO FINANCIAL STATEMENTS--(Continued)
 
 
  For purposes of pro forma disclosures, the estimated fair value of the
options is amortized to expense over the options' vesting period. The Company's
pro forma information follows:
 
<TABLE>
<CAPTION>
                                          1998          1997          1996
                                      ------------  ------------  ------------
   <S>                                <C>           <C>           <C>
   Pro forma net loss................ $(11,948,280) $(16,153,548) $(15,554,890)
   Pro forma loss per share..........        (1.33)        (2.18)        (2.66)
</TABLE>
 
  Because the SFAS 123 method of accounting has not been applied to options
granted prior to January 1, 1995, the resulting pro forma net loss may not be
representative of that to be expected in future years.
 
  Changes in stock options for the years ended December 31, 1998 and 1997 were
as follows:
 
<TABLE>
<CAPTION>
                                                                   Exercise
                                                     Options         Price
                                                    ----------  ---------------
   <S>                                              <C>         <C>
   Outstanding at December 31, 1995................    367,838  $  .45--$  5.40
   Options granted.................................    508,652  $ 2.70--$ 19.00
   Options exercised/canceled......................   (197,067) $  .45--$  5.40
                                                    ----------  ---------------
   Outstanding at December 31, 1996................    679,423  $  .45--$ 19.00
   Options granted.................................    604,300  $ 7.50--$ 13.50
   Options exercised/canceled......................    (64,833) $  .45--$ 19.00
                                                    ----------  ---------------
   Outstanding at December 31, 1997................  1,218,890  $  .45--$ 15.25
   Options granted.................................  1,174,560  $ 3.00--$  8.13
   Options exercised/canceled...................... (1,045,878) $  .45--$ 15.25
                                                    ----------  ---------------
   Outstanding at December 31, 1998................  1,347,572  $  .45--$ 12.78
                                                    ==========  ===============
</TABLE>
 
  The weighted average exercise price of options outstanding at December 31,
1998, 1997 and 1996 was $4.21 and $9.31 and $8.93, respectively.
 
  Stock options vest as follows:
 
<TABLE>
<CAPTION>
                                                                       Options
                                                                      ---------
   <S>                                                                <C>
   Currently exercisable.............................................   258,279
   1999..............................................................   219,492
   2000..............................................................   176,592
   2001..............................................................   159,938
   2002..............................................................   149,583
   2003 and thereafter...............................................   172,160
   Contingent vesting................................................   211,528
                                                                      ---------
   Total............................................................. 1,347,572
                                                                      =========
</TABLE>
 
7. Collaborative Agreements
 
 Parke-Davis
 
  In April 1993, the Company entered into a research and development
collaboration agreement with the Parke-Davis division of the Warner-Lambert
Corporation ("Parke-Davis"), whereby Parke-Davis was to partially fund the
research and development costs incurred by the Company in developing and
commercializing ribozyme-based products for application to the treatment of
osteoarthritis and other diseases. Pursuant to the Parke-Davis agreement,
Parke-Davis purchased 100,100 shares of Series C preferred stock at a price of
$29.97 per share in 1993, 27,777 shares of Series C preferred stock at a price
of $36.00 per share in 1994, and 40,160 shares of Series F preferred stock at
$37.35 per share in 1995, for a
 
                                      F-13
<PAGE>
 
                         RIBOZYME PHARMACEUTICALS, INC.
 
                   NOTES TO FINANCIAL STATEMENTS--(Continued)
 
total equity investment of $5,500,000. All preferred shares were converted into
168,037 shares of common stock upon the Company's initial public offering.
 
  Also pursuant to the collaboration agreement, through December 31, 1996,
Parke-Davis provided $1,700,000 research and development funding to the
Company. As of June 30, 1997, the collaboration agreement has been completed.
 
  In March 1998, the Company entered into a Target Validation agreement with
Parke-Davis. The agreement gives Parke-Davis access to the Company's
proprietary ribozyme technology which will assist Parke-Davis in determining
which genes are valid therapeutic targets. Under the terms of the contract, the
Company will design and synthesize ribozymes against target genes designated by
Parke-Davis and perform various studies to determine the level of gene
expression inhibition achieved. Parke-Davis will fund the research and may
provide milestone payments or success fees to the Company if Parke-Davis uses
the information to derive compounds to take into development.
 
 Dow Agrosciences
 
  In September 1993, the Company entered into a research and development study
with Dow Agrosciences (the "Feasibility Study") to demonstrate the stable
integration and the effective use of ribozymes to alter corn composition.
Pursuant to the terms of the Feasibility Study, Dow Agrosciences reimbursed the
Company for all of its expenses related to the Feasibility Study and, in 1994,
purchased 41,666 shares of Series D preferred stock at a price of $36.00 per
share, for a total equity investment of $1,500,000. All preferred shares were
converted into 41,666 shares of common stock upon completion of the Company's
initial public offering.
 
  The Feasibility Study was completed in 1997 and the parties entered into a
long-term license agreement for the development and commercialization of
ribozymes to the targets of interest. As consideration for the long-term
license agreement, 41,666 shares of common stock held by Dow Agrosciences were
returned to the Company. The Company canceled 33,333 of the shares and reissued
the remaining 8,333 shares to CTI as a consideration of royalty, due to the
license transaction.
 
 Chiron
 
  In July 1994, the Company entered into a research and development
collaboration agreement with Chiron to research, develop and market products
directed towards five genetic targets, and all human clinical indications
associated with those targets. The Company and Chiron will share equally in the
costs and profits of any jointly developed products. In addition, Chiron may,
at its option, finance the Company's portion of its Phase II and Phase III drug
development costs for mutually approved programs. The Company retains the
option to reacquire its rights by reimbursing Chiron for such development costs
plus a predetermined risk premium. The term of the research program is five
years, with the terms of the agreement to be extended if products are jointly
developed. As part of this agreement, Chiron committed to make a $10,000,000
equity investment in the Company. The components of this investment are:
 
    In 1994, Chiron purchased 100,000 shares of the Company's common stock at
  a price of $3.60 per share, or $360,000; also in 1994 Chiron purchased
  107,095 shares of Series E preferred stock at a price of $37.35 per share,
  or $4,000,000. In 1996, the Company issued Chiron immediately upon the
  closing of the Company's initial public offering a warrant to purchase
  444,444 shares of the Company's common stock which is exercisable at a
  price of $22.50 per share, for an aggregate purchase price of $4.50 per
  warrant share. In 1994, Chiron paid the Company $0.45 per warrant share, or
  $200,000. The balance of the warrant purchase price, $1,800,000, or $4.05
  per warrant share, was paid to the Company upon completion of its initial
  public offering. Further, Chiron purchased 377,202 common
 
                                      F-14
<PAGE>
 
                         RIBOZYME PHARMACEUTICALS, INC.
 
                   NOTES TO FINANCIAL STATEMENTS--(Continued)
 
  shares with an aggregate value of $3,640,000 upon completion of the
  Company's initial public offering, at the initial public offering price
  less one-half of the underwriting discount. Chiron also has a designated
  Board member on the Company's Board of Directors. All preferred shares were
  converted into 142,222 shares of common stock upon completion of the
  Company's initial public offering.
 
  In May 1996, the Company entered into a collaboration with Chiron for the use
of ribozymes to characterize gene function. The collaboration gives Chiron the
right to develop and commercialize products that result from the collaboration,
and would entitle RPI to receive product development milestone payments and
royalties on sales of any such commercial products. Chiron and RPI each pay a
portion of the research and development expenses of the collaboration, and the
Company provided Chiron $1,800,000 in 1996 for research funding related to the
collaboration.
 
  In September 1998, the Company received a $2.5 million option payment from
Chiron related to the possible joint product development of ANGIOZYME. In
December 1998, Chiron paid the final option payment of $2.5 million to
guarantee its position as a joint collaborator for the development of
ANGIOZYME. In addition, and coinciding with the second option payment, Chiron
agreed to share equally in the costs of product development of ANGIOZYME. In
1998, the Company recorded $1,048,138 in revenues related to Chiron product
development payments.
 
 Pharmacia Biotech AB
 
  In November 1995, the Company and Pharmacia Biotech AB entered into a
collaboration and license agreement for the improvement of production scale
synthesis of RNA and chimeric oligonucleotides. The goal of the collaboration
is to reduce the cost of manufacturing ribozymes and other oligonucleotide
products. Pharmacia Biotech AB will provide research funding, synthesis support
and instrumentation, while RPI will receive royalties on the sales of modified
RNA oligonucleotides and non-DNA primer support. As of December 31, 1998, the
Company has received $731,500 in funding pursuant to the agreement.
 
 Schering AG, Berlin
 
  On April 9, 1997, the Company entered into a research collaboration with
Schering AG, Berlin, ("Schering AG") focusing on the use of ribozymes for
therapeutic target validation, as well as the development of ribozymes as
therapeutic agents. The collaboration will utilize the special selectivity of
ribozymes to validate new molecular therapeutic targets and to discover new
therapeutic agents based on those targets. The Company will provide its
expertise in ribozyme design, synthesis and delivery, and Berlex Laboratories,
Inc., a U.S. subsidiary of Schering AG ("Berlex") will provide candidate
targets, cell culture screens, animal models and development and
commercialization expertise to the collaboration. The Company anticipates that
hundreds of potential targets may be examined over a five year period with
Berlex having the option to commercialize products from any validated targets.
 
  Schering AG made an equity investment in the Company in May 1997 of $2.5
million in exchange for 212,766 shares of common stock, and made an additional
equity investment of $2.5 million for 465,117 shares in April 1998. Separately,
Schering AG provided a loan of $2.0 million in 1997, and subsequently $2.0
million in 1998. Schering AG will continue to provide loans of up to $2.0
million annually for each of the next three years, provided that the
collaboration is continued in each of those years. Amounts not used in any
calendar year may be carried forward to future years. According to the terms of
the Company's agreement with Schering AG, 50% of any borrowings on the line of
credit must be collateralized by equipment purchases. The loans, which carry an
interest rate of 8% per annum, are convertible into equity at the option of
Schering AG under certain circumstances. At December 31, 1998, the outstanding
borrowings of $4.3 million were convertible into approximately 992,000 shares
of the Company's common
 
                                      F-15
<PAGE>
 
                         RIBOZYME PHARMACEUTICALS, INC.
 
                   NOTES TO FINANCIAL STATEMENTS--(Continued)
 
stock. Principal and interest payments are deferred until maturity of the loans
which is in April 2004. In addition, Schering AG made research payments of $2.0
million and $1.5 million in 1998 and 1997, respectively. Provided that the
collaboration is continued, Schering AG will make research payments of $2
million a year for each year through April 2001. The Company may earn success
fees upon product development milestones and will manufacture synthetic
ribozyme products and receive royalties on sales of both ribozyme and non-
ribozyme products resulting from the collaboration. All such payments are
subject to some restrictions, including receipt of certain third party
consents. Upon payment of termination fees paid to the Company, the research
collaboration may be terminated at Schering AG's option any time.
 
 Roche Bioscience
 
  In May 1998, the Company entered into a Target Validation agreement with
Roche Bioscience. The agreement gives Roche Bioscience access to the Company's
proprietary ribozyme technology which will assist Roche Bioscience in
determining which genes are valid therapeutic targets. Under the terms of the
contract, the Company will design and synthesize ribozymes against target genes
designated by Roche Bioscience and perform various studies to determine the
level of gene expression inhibition achieved. Roche Bioscience will fund the
research and may provide milestone payments or success fees to the Company if
Roche Bioscience uses the information to derive compounds to take into
development.
 
8. Commitments and Contingency
 
  At the core of the Company's technology are inventions and patents of the
University of Colorado ("CU") which were developed by Dr. Thomas R. Cech and
various associates of Dr. Cech. Pursuant to the policies of CU, these
inventions and the patents issued thereon, (the "Cech Technology") became the
property of CU. The Cech Technology was assigned to CU's affiliate, University
Research Corporation ("URC"), which in turn assigned the rights to license
certain of the Cech Technology to Competitive Technologies, Inc. ("CTI"),
formerly known as University Patents, Inc. United States Biochemical
Corporation ("USB") licensed the Cech Technology pursuant to two sublicenses.
One of these sublicenses was for the Cech Technology held by CTI. In November
1996, USB assigned to the Company its rights under the sublicense from CTI and
the Company entered into an amended and restated license with CTI. The Company
also has obtained a license from URC and a sublicense from USB for other Cech
Technology held by URC. The CTI license, URC license and USB sublicense
together grant the Company the exclusive (except for non-commercial academic
research) worldwide right, among other things, to make, use and sell RNA
enzymes covered by licensed patents and products incorporating them. The URC
license and USB sublicense are fully paid. The CTI license provides for the
payment of a royalty on sales of products incorporating RNA enzymes, covered by
licensed patents, and for certain minimum annual royalties. The Company may
grant sublicenses to the licensed technology subject to the payment to CTI of a
share of royalty income from such sublicenses or a royalty on sales from
sublicensed products, methods or services, depending on the particular licensed
patents involved. In addition, the Company must pay CTI a share of any option
fee, license fee, prepaid royalty or other "front-end" fee other than research
and development funding paid in connection with such sublicense. At the
Company's discretion, the payment may be in either cash or equity.
 
  During 1993, the Company was granted the right of first refusal to license
any new inventions, improvements and patents related to ribozyme technology
developed by Dr. Cech or others at CU, in exchange for certain payments. In
order to maintain the right of first refusal, the Company agreed to fund
research at CU through an unrestricted grant of $750,000 payable in various
installments over a five year period commencing in September 1993. URC made an
investment of approximately $41,000 for 46,188 shares of the Company's common
stock upon entering into the agreement.
 
 
                                      F-16
<PAGE>
 
                         RIBOZYME PHARMACEUTICALS, INC.
 
                   NOTES TO FINANCIAL STATEMENTS--(Continued)
 
  During 1996, the Company eliminated the royalty arrangement in exchange for
45,000 shares of its common stock. The Company recognized expense related to
the exchange of $540,000 during 1996. The Company's final payment under the
above unrestricted grant was $113,000, which was paid in 1998.
 
  The Company is involved in legal proceedings which have arisen in the
ordinary course of business. In the opinion of management the outcome of these
legal proceedings will not have a material adverse impact on the Company's
financial position or operations.
 
9. Related Party Transactions
 
  At December 31, 1998, 1997 and 1996, the Company had a total of $280,932,
$320,000, and $225,000, respectively, of non-interest bearing loans due from
officers. The balances may be forgiven by the Company under certain employment
agreement provisions. The loan balances are forgivable or payable to the
Company under various terms not to exceed 5 years. The Company forgave
$126,466, $80,000 and $85,000 of these loans during each of the years ending
December 31, 1998, 1997 and 1996, respectively.
 
10. Formation of Atugen, an unconsolidated German Affiliate
 
  In 1998, the Company transferred its gene function and target validation
business and technology to Atugen, a separately funded German affiliate.
Financing for Atugen was accomplished through an equity investment of $2.0
million from RPI, a venture capital investment of $7.0 million and a commitment
by the German government to provide grants and loans of up to $10.0 million. As
a result, at December 31, 1998, RPI retained a 49.5% ownership in Atugen. In
connection with its formation, Atugen received exclusive royalty-free licenses
to RPI patents and technologies for target validation and discovery in exchange
for a one-time $2.0 million payment which was received by RPI in January 1999.
The entire amount of this one-time payment has been deferred as of December 31,
1998 and will be amortized over the five-year term of the license agreement and
reflected in the Company's equity in earnings or loss of this unconsolidated
affiliate.
 
  According to a service agreement executed by both parties, RPI will provide
management support, technologies, facilities and reagents to Atugen for
reasonable fees. RPI will retain rights to develop ribozyme therapeutic agents
against targets validated by Atugen.
 
  In 1998, RPI gave to its officers and certain other employees stock
representing a 5.5% interest in the newly formed Atugen at no personal cost to
the individuals. As a result, the Company's 1998 Statement of Operations
includes $81,000 of compensation related to the share grant.
 
11. Income Taxes
 
  The Company accounts for income taxes in accordance with Statement of
Financial Accounting Standard No. 109, Accounting for Income Taxes (SFAS 109).
Under the provisions of SFAS 109, a deferred tax liability or asset (net of a
valuation allowance) is provided in the financial statements by applying the
provisions of applicable tax laws to measure the deferred tax consequences of
temporary differences that will result in net taxable or deductible amounts in
future years as a result of events recognized in the financial statements in
the current or preceding years.
 
                                      F-17
<PAGE>
 
                         RIBOZYME PHARMACEUTICALS, INC.
 
                   NOTES TO FINANCIAL STATEMENTS--(Continued)
 
 
  At December 31, 1998, the Company has the following net operating loss and
tax credit carryforwards for income tax purposes:
 
<TABLE>
<CAPTION>
                                                 Net     Research and   State
                                              Operating  Development  Investment
   Expiration Date                             Losses      Credits     Credits
   ---------------                           ----------- ------------ ----------
   <S>                                       <C>         <C>          <C>
   1999..................................... $       --   $      --    $14,000
   2000.....................................         --          --     11,000
   2001.....................................         --          --      6,000
   2007.....................................   3,506,000     101,000       --
   2008.....................................   7,363,000     185,000       --
   2009.....................................   9,239,000     316,000       --
   2010.....................................  11,953,000     139,000       --
   2011.....................................  15,125,000     181,000       --
   2012.....................................  15,291,000     297,000       --
   2018.....................................  11,248,000     298,000       --
                                             -----------  ----------   -------
   Total.................................... $73,725,000  $1,517,000   $31,000
                                             ===========  ==========   =======
</TABLE>
 
  The Tax Reform Act of 1986 contains provisions that limit the utilization of
net operating loss and tax credit carryforwards if there has been a "change of
ownership" as described in Section 382 of the Internal Revenue Code. Such a
change of ownership may limit the Company's utilization of its net operating
loss and tax credit carryforwards, and could have been triggered by the
Company's initial public offering or by subsequent sales of securities by the
Company or its shareholders.
 
  The components of the Company's deferred tax assets and liabilities as of
December 31, 1998 and 1997 are as follows:
 
<TABLE>
<CAPTION>
                                                        1998          1997
                                                    ------------  ------------
   <S>                                              <C>           <C>
   Deferred tax assets:
     Net operating loss carryforwards.............  $ 27,499,000  $ 23,324,000
     Research and development and state investment
      credit carryforwards........................     1,516,000     1,102,000
     Depreciation.................................       639,000       618,000
     Other........................................        62,000        12,000
                                                    ------------  ------------
                                                      29,716,000    25,056,000
     Valuation allowance..........................   (28,610,000)  (24,097,000)
                                                    ------------  ------------
     Net deferred tax assets......................     1,106,000       959,000
   Deferred tax liabilities:
     Deferred patent costs........................     1,084,000       936,000
     Other........................................        22,000        23,000
                                                    ------------  ------------
     Total deferred tax liabilities...............     1,106,000       959,000
                                                    ------------  ------------
                                                    $        --   $        --
                                                    ============  ============
</TABLE>
 
                                      F-18
<PAGE>
 
                         RIBOZYME PHARMACEUTICALS, INC.
 
                   NOTES TO FINANCIAL STATEMENTS--(Continued)
 
 
11. Employee Savings Plan
 
  The Company has a 401(k) plan which allows participants to contribute 1% to
15% of their salary, subject to eligibility requirements and annual limits. The
Board may, at its sole discretion, approve matching contributions with the
Company's common stock. In both 1998 and 1997, the Board approved a 50% common
stock match equal to total participant deferrals made in each respective year.
The Company stock match is subject to vesting restrictions.
 
12. Subsequent Event
 
  In March 1999, the Company entered into a collaboration with Eli Lilly and
Company ("Lilly") to conduct research, development and commercialization of
HEPTAZYME, the Company's ribozyme for the treatment of hepatitis C virus
("HCV") infection. Under the terms of the agreement, the Company will receive
approximately $9.2 million in 1999, which includes initial fees, funding for
research and clinical trial expenses, and an equity investment. In addition,
the Company may receive success fees related to various development milestones
and royalties on future sales of products developed related to the
collaboration. Lilly will receive the exclusive worldwide commercialization
rights to products that result from this collaboration, including the HEPTAZYME
product. The Company has retained certain rights to manufacture HEPTAZYME
products resulting from the collaboration.
 
 
                                      F-19
<PAGE>
 
ANGIOZYME/TM/ and HEPTAZYME/TM/ are trademarks of Ribozyme Pharmaceuticals.





















 
<PAGE>
 
- --------------------------------------------------------------------------------
- --------------------------------------------------------------------------------
 
                                1,800,000 Shares

                          [LOGO OF RPI APPEARS HERE]

                                  Common Stock
 
                                 ------------
                                   PROSPECTUS
                                 ------------
 
                             HAMBRECHT & QUIST LLC
 
 
 
 
                                 ------------
                                          , 1999
 
                                 ------------
 
  You should rely only on information contained in this prospectus. We have not
authorized anyone to provide you with information different from that contained
in this prospectus. We are offering to sell, and seeking offers to buy, shares
of common stock only in jurisdictions where offers and sales are permitted. The
information contained in this prospectus is accurate only as of the date of
this prospectus, regardless of the time of delivery of this prospectus or of
any sale of our common stock.
 
  No action is being taken in any jurisdiction outside the United States to
permit a public offering of the common stock or possession or distribution of
this prospectus in any such jurisdiction. Persons who come into possession of
this prospectus in jurisdictions outside the United States are required to
inform themselves about and to observe any restrictions as to this offering and
the distribution of this prospectus applicable to that jurisdiction.
 
 
- --------------------------------------------------------------------------------
- --------------------------------------------------------------------------------
<PAGE>
 
                                    PART II
 
                     INFORMATION NOT REQUIRED IN PROSPECTUS
 
Item 13. Other Expenses Of Issuance And Distribution
 
  The following table sets forth the various expenses in connection with the
distribution and sale of the securities being registered which will be paid by
us. All amounts are estimates except for the SEC registration fee:
 
<TABLE>
   <S>                                                                 <C>
   SEC registration fee............................................... $  2,390
   Printing and mailing expenses...................................... $ 40,000
   Nasdaq listing fee................................................. $ 17,500
   Legal fees and expenses............................................ $ 75,000
   Accounting fees and expenses....................................... $ 40,000
                                                                       --------
       TOTAL.......................................................... $174,890
                                                                       ========
</TABLE>
 
Item 14. Indemnification Of Directors And Officers
 
  Article XI of our Bylaws provides for indemnification of our directors to the
fullest extent permitted by law, as now in effect or later amended. Article XI
of our Bylaws also permits the indemnification to the same extent of our
officers, employees or agents if, and to the extent, authorized by the Board of
Directors. In addition, the Bylaws provide for indemnification against expenses
incurred by a director to be paid by us at reasonable intervals in advance of
the final disposition of such action, suit or proceeding upon receipt of an
undertaking by or on behalf of the director or officer to repay such amount if
it shall be ultimately determined that he is not entitled to be indemnified by
us. The Bylaws further provide for a contractual cause of action on the part of
our directors for indemnification claims that have not been paid by us.
 
  Article VI of our Certificate of Incorporation, as amended, limits under
certain circumstances the liability of our directors for a breach of their
fiduciary duty as directors. These provisions do not eliminate the liability of
a director (1) for a breach of the director's duty of loyalty to us or our
stockholders, (2) for acts or omissions not in good faith or that involve
intentional misconduct or a knowing violation of law, (3) under Section 174 of
the General Corporate Law of the State of Delaware ("DGCL") (relating to the
declaration of dividends and purchase or redemption of shares in violation of
the DGCL) or (4) for any transaction from which the director derived an
improper personal benefit.
 
  Section 145 of the DGCL contains provisions regarding indemnification, among
others, of officers and directors. Section 145 of the DGCL provides in relevant
part:
 
    (a) A corporation shall have power to indemnify any person who was or is
  a party or is threatened to be made a party to any threatened, pending or
  completed action, suit or proceeding, whether civil, criminal,
  administrative or investigative (other than an action by or in the right of
  the corporation) by reason of the fact that the person is or was a
  director, officer, employee or agent of the corporation, or is or was
  serving at the request of the corporation as a director, officer, employee
  or agent of another corporation, partnership, joint venture, trust or other
  enterprise, against expenses (including attorneys' fees), judgments, fines
  and amounts paid in settlement actually and reasonably incurred by the
  person in connection with such action, suit or proceeding if the person
  acted in good faith and in a manner the person reasonably believed to be in
  or not opposed to the best interests of the corporation, and, with respect
  to any criminal action or proceeding, had no reasonable cause to believe
  the person's conduct was unlawful. The termination of any action, suit or
  proceeding by judgment, order, settlement, conviction, or upon a plea of
  nolo contendere or its equivalent, shall not, of itself, create a
  presumption that the person did not act in good faith and in a manner which
  the person reasonably believed to be in or not opposed to the best
  interests of the corporation, and, with respect to any criminal action or
  proceeding, had reasonable cause to believe that the person's conduct was
  unlawful.
 
                                      II-1
<PAGE>
 
    (b) A corporation shall have power to indemnify any person who was or is
  a party or is threatened to be made a party to any threatened, pending or
  completed action or suit by or in the right of the corporation to procure a
  judgment in its favor by reason of the fact that the person is or was a
  director, officer, employee or agent of the corporation, or is or was
  serving at the request of the corporation as a director, officer, employee
  or agent of another corporation, partnership, joint venture, trust or other
  enterprise against expenses (including attorneys' fees) actually and
  reasonably incurred by the person in connection with the defense or
  settlement of such action or suit if the person acted in good faith and in
  a manner the person reasonably believed to be in or not opposed to the best
  interests of the corporation and except that no indemnification shall be
  made in respect of any claim, issue or matter as to which such person shall
  have been adjudged to be liable to the corporation unless and only to the
  extent that the Court of Chancery or the court in which such action or suit
  was brought shall determine upon application that, despite the adjudication
  of liability but in view of all the circumstances of the case, such person
  is fairly and reasonably entitled to indemnity for such expenses which the
  Court of Chancery or such other court shall deem proper.
 
    (c) To the extent that a present or former director or officer of a
  corporation has been successful on the merits or otherwise in defense of
  any action, suit or proceeding referred to in subsections (a) and (b) of
  this section, or in defense of any claim, issue or matter therein, such
  person shall be indemnified against expenses (including attorneys' fees)
  actually and reasonably incurred by such person in connection therewith.
 
    (d) Any indemnification under subsections (a) and (b) of this section
  (unless ordered by a court) shall be made by the corporation only as
  authorized in the specific case upon a determination that indemnification
  of the present or former director, officer, employee or agent is proper in
  the circumstances because the person has met the applicable standard of
  conduct set forth in subsections (a) and (b) of this section. Such
  determination shall be made, with respect to a person who is a director or
  officer at the time of such determination, (1) by a majority vote of the
  directors who are not parties to such action, suit or proceeding, even
  though less than a quorum, or (2) by a committee of such directors
  designated by majority vote of such directors, even though less than a
  quorum, or (3) if there are no such directors, or if such directors so
  direct, by independent legal counsel in a written opinion, or (4) by the
  stockholders.
 
  Delaware law also permits a corporation to purchase and maintain insurance on
behalf of any person who is or was a director or officer against any liability
asserted against him and incurred by him in such capacity or arising out of his
status as such, whether or not the corporation has the power to indemnify him
against that liability under Section 145 of the DGCL.
 
  We also have provided liability insurance for each director and officer for
losses arising from claims or charges made against them while acting in their
capacities as our directors or officers.
 
  The above discussion of our corporate documents is not intended to be
exhaustive and is respectively qualified in its entirety by our corporate
documents.
 
Item 15. Recent Sale Of Unregistered Securities
 
  The following table sets forth the Ribozyme Pharmaceuticals' sales of
unregistered securities for the past three years. All transactions listed below
involved the issuance of common stock and options to acquire shares of common
stock prior to commencement of the offering described in the foregoing
prospectus. No underwriters were employed with respect to the sale of any of
the securities listed below. All shares were issued in reliance upon Section
4(2) and/or 3(b) of the Securities Act.
 
<TABLE>
<CAPTION>
Securities Issued                         Purchaser  Date Acquired Consideration
- -----------------                        ----------- ------------- -------------
<S>                                      <C>         <C>           <C>
212,776 shares of common stock.......... Schering AG   May 1997     $2,500,000
465,117 shares of common stock.......... Schering AG   May 1998     $2,500,000
</TABLE>
 
 
                                      II-2
<PAGE>
 
Item 16. Exhibits And Financial Statement Schedules
 
  (a) Exhibits
 
<TABLE>
<CAPTION>
 Number                               Description
 ------                               -----------
 <C>    <S>
  1.1   Form of Placement Agency Agreement dated    , 1999, between Ribozyme
         Pharmaceuticals and Hambrecht & Quist LLC
 
  1.2   Form of Escrow Agreement dated    , 1999, between Ribozyme
         Pharmaceuticals Hambrecht & Quist LLC and Citibank, N.A.
 
  3.1   Amended and Restated Certificate of Incorporation of Ribozyme
         Pharmaceuticals dated April 17, 1996(5)
 
  3.2   Bylaws of Ribozyme Pharmaceuticals, as amended(1)
 
  4.1   Specimen Stock Certificate(1)
 
  5.1   Opinion of Rothgerber Johnson & Lyons LLP
 
 10.1   Form of Indemnity Agreement entered into between Ribozyme
         Pharmaceuticals and its directors and officers, with related
         schedule(1)
 
 10.2   Ribozyme Pharmaceuticals' Incentive Stock Option Plan, including form
         of Incentive Stock Option Agreement(1)
 
 10.3   Ribozyme Pharmaceuticals' Non-Qualified Stock Option Plan, including
         form of Non-Qualified Stock Option Agreement(1)
 
 10.4   Ribozyme Pharmaceuticals' 1996 Stock Option Plan, including forms of
         Incentive Stock Option and Nonstatutory Stock Option Agreements(1)
 
 10.5   Ribozyme Pharmaceuticals' 1996 Employee Stock Purchase Plan(1)
 
 10.6   Employment Agreement dated January 1, 1997, between Ribozyme
         Pharmaceuticals and Ralph E. Christoffersen(5)
 
 10.7   Incentive Stock Option Agreement between Ribozyme Pharmaceuticals and
         Ralph E. Christoffersen dated December 23, 1992(1)
 
 10.8   Incentive Stock Option Agreement between Ribozyme Pharmaceuticals and
         Ralph E. Christoffersen dated September 23, 1994(1)
 
 10.9   Warrant Purchase Agreement dated March 15, 1995, between Ribozyme
         Pharmaceuticals and Hambrecht & Quist Guaranty Finance(1)
 
 10.10  Warrant to Purchase Common Stock dated March 15, 1995, issued to
         Hambrecht & Quist Guaranty Finance(1)
 
 10.11  Warrant to Purchase Common Stock dated February 22, 1993, issued to
         LINC Scientific Leasing(1)
 
 10.12  Warrant to Purchase Common Stock dated July 30, 1993, issued to
         Douglas E. Olson(1)
 
 10.13  Warrant to Purchase Common Stock dated July 30, 1993, issued to
         Richard J. Warburg and Ruth P. Warburg(1)
 
 10.14  Warrant to Purchase Common Stock dated December 28, 1994, issued to
         Competitive Technologies, Inc.(1)
 
 10.15  Warrant to Purchase Common Stock dated December 29, 1995, issued to
         Silicon Valley Bank(1)
 
 10.16  Warrant to Purchase Common Stock dated July 26, 1996, issued to
         Silicon Valley Bank(1)
 
 10.17  Warrant to Purchase Common Stock dated April 17, 1996, issued to
         Chiron Corporation(1)
 
 10.18  Collaborative Research, Development and Commercialization Agreement
         dated July 15, 1994, between Ribozyme Pharmaceuticals and Chiron
         Corporation(1)
 
 10.19  Research Collaboration and Licensing Agreement dated November 1, 1995,
         between Ribozyme Pharmaceuticals and Pharmacia Biotech, AB(1)
 
</TABLE>
 
 
                                      II-3
<PAGE>
 
<TABLE>
<CAPTION>
 Number                               Description
 ------                               -----------
 <C>    <S>
 10.20  Research and Development Collaboration Agreement dated April 19, 1993,
         between Ribozyme Pharmaceuticals and Parke-Davis Division of Warner-
         Lambert Company(1)
 
 10.21  First Amendment to the Research and Development Collaboration
         Agreement dated April 17, 1995, between Ribozyme Pharmaceuticals and
         Parke-Davis Division of Warner-Lambert Company(1)
 
 10.22  Second Amendment to the Research and Development Collaboration
         Agreement dated February 8, 1996, between Ribozyme Pharmaceuticals
         and Parke-Davis Division of Warner-Lambert Company(1)
 
 10.23  Financing Agreement dated March 16, 1995, among Wilderness Place
         Holdings L.L.C., Hambrecht & Quist Guaranty Finance, L.P. and
         Ribozyme Pharmaceuticals(1)
 
 10.24  Negotiable Promissory Note dated October 7, 1992, between Ribozyme
         Pharmaceuticals and Ralph Christoffersen and Addendum dated June 25,
         1993(1)
 
 10.25  Employment Agreement dated January 8, 1996, between Ribozyme
         Pharmaceuticals and Lawrence E. Bullock(1)
 
 10.26  Promissory Note dated February 8, 1996, between Ribozyme
         Pharmaceuticals and Lawrence E. Bullock(1)
 
 10.27  Lease for Real Property dated May 20, 1992, between Aero-Tech
         Investments and Ribozyme Pharmaceuticals(1)
 
 10.28  Non-Disturbance and Attornment Agreement dated March 31, 1995, among
         General American Life Insurance Company, Aero-Tech Investments,
         Wilderness Place Holdings L.L.C. and Ribozyme Pharmaceuticals(1)
 
 10.29  Master Lease Agreement dated September 2, 1992, between Ribozyme
         Pharmaceuticals and LINC Scientific Leasing(1)
 
 10.30  Loan and Security Agreement dated February 28, 1994, between Ribozyme
         Pharmaceuticals and Silicon Valley Bank(1)
 
 10.31  Loan Modification Agreement dated December 21, 1994, between Ribozyme
         Pharmaceuticals and Silicon Valley Bank(1)
 
 10.32  Loan and Security Agreement dated December 29, 1995, between Ribozyme
         Pharmaceuticals and Silicon Valley Bank and MMC/GATX Partnership No.
         1(1)
 
 10.33  Warrant to Purchase Common Stock dated December 29, 1995, issued to
         MMC/GATX Partnership No. 1(1)
 
 10.34  Agreement dated February 29, 1996, between Ribozyme Pharmaceuticals
         and Chiron Corporation relating to research and development funding(1)
 
 10.35  Amendments to original Employment Agreements between Ribozyme
         Pharmaceuticals and Ralph E. Christoffersen, Lawrence E. Bullock and
         Nassim Usman, pursuant to letters dated November 14, 1996, November
         22, 1996, and December 15, 1996(3)
 
 10.36  Promissory Note dated June 4, 1996, between Ribozyme Pharmaceuticals
         and Nassim Usman(3)
 
 10.37  Amendment to Lease for Real Property dated March 13, 1997, between
         Aero-Tech Investments and Ribozyme Pharmaceuticals(3)
 
 10.38  Employment Agreement dated May 2, 1996, between Ribozyme
         Pharmaceuticals and Nassim Usman(2)
 
 10.39  Collaboration Agreement Regarding Use of Ribozymes to Determine Gene
         Function dated May 13, 1996, between Ribozyme Pharmaceuticals and
         Chiron Corporation(2)
 
</TABLE>
 
 
                                      II-4
<PAGE>
 
<TABLE>
<CAPTION>
 Number                               Description
 ------                               -----------
 <C>    <S>
 10.40  Amended and Restated License Agreement dated November 20, 1996, between
         Ribozyme Pharmaceuticals, University Research Corporation, University
         of Colorado and United States Biochemical Corporation(3)*
 
 10.41  Amended and Restated Sublicense Agreement dated November 20, 1996,
         between Ribozyme Pharmaceuticals and United States Biochemical
         Corporation(3)*
 
 10.42  Amended and Restated License Agreement dated November 20, 1996, between
         Ribozyme Pharmaceuticals and Competitive Technologies,
         Incorporated(3)*
 
 10.43  Memorandum of Understanding dated March 1, 1996, between Ribozyme
         Pharmaceuticals and DowElanco(1)
 
 10.44  Stock Subscription Agreement dated September 1996 between Ribozyme
         Pharmaceuticals and University of Research Corporation(3)*
 
 10.45  Stock Subscription Agreement dated November 20, 1996, between Ribozyme
         Pharmaceuticals and United States Biochemical Corporation(3)*
 
 10.46  Assignment of License and Restated License Agreement dated November 20,
         1996, among Ribozyme Pharmaceuticals, United States Biochemical
         Corporation and Competitive Technologies(3)*
 
 10.47  Letter Agreement dated May 22, 1996, between Ribozyme Pharmaceuticals
         and ALZA Corporation(3)*
 
 10.48  Research and Development Collaboration Agreement dated December 2,
         1996, between Ribozyme Pharmaceuticals and Protogene Laboratories(3)*
 
 10.49  License Agreement dated February 14, 1997, between Ribozyme
         Pharmaceuticals and IntelliGene, Ltd.(3)*
 
 10.50  Subscription Agreement dated April 17, 1995, between Ribozyme
         Pharmaceuticals and Parke-Davis Division of Warner-Lambert Company(1)
 
 10.51  Stock Purchase Agreement dated June 28, 1995, among Ribozyme
         Pharmaceuticals and investors(1)
 
 10.52  Agreement dated March 1, 1996, between Ribozyme Pharmaceuticals and
         DowElanco Corporation relating to the conversion of preferred stock(1)
 
 10.53  Stock Subscription Agreement dated October 30, 1995, between Ribozyme
         Pharmaceuticals and Gewestelijke Investeringsmaatschappij voor
         Vlaanderon n.v.(1)
 
 10.54  Research, License, Supply and Royalty Agreement between Schering
         Aktiengesellschaft and Ribozyme Pharmaceuticals dated April 9,
         1997(4)*
 
 10.55  Purchase Agreement dated April 9, 1997, among Ribozyme Pharmaceuticals,
         Schering Berlin Venture Corporation and Schering
         Aktiengesellschaft(4)*
 
 10.56  Employment Agreement dated February 27, 1997, between Ribozyme
         Pharmaceuticals and Alene Holzman(5)
 
 10.57  Employment Agreement dated July 5, 1997, between Ribozyme
         Pharmaceuticals and Thomas Rossing(5)
 
 10.58  Executive Bonus Plan dated March 27, 1998(6)
 
 10.59  Research, Collaboration and License Agreement dated May 19, 1998,
         between Ribozyme Pharmaceuticals and Roche Bioscience, a division of
         Syntex (U.S.A.) Inc.(7)*
 
 10.60  Employment Agreement dated September 8, 1998, between Ribozyme
         Pharmaceuticals and Nassim Usman(8)
 
 10.61  Participation Agreement dated August 31, 1998, as amended, and related
         documents between Ribozyme Pharmaceuticals and Atugen Biotechnology
         GmbH(9)**
 
</TABLE>
 
 
                                      II-5
<PAGE>
 
<TABLE>
<CAPTION>
 Number                              Description
 ------                              -----------
 <C>    <S>
 10.62  Research Collaboration and License Agreement dated March 17, 1999,
         between Ribozyme Pharmaceuticals and Eli Lilly and Company***
 
 23.1   Consent of Ernst & Young LLP, Independent Auditors
 
 23.2   Consent of Rothgerber Johnson & Lyons LLP (included in Exhibit 5.1)
 
 24.1   Power of attorney (included on the signature page of this
         Registration Statement)
</TABLE>
- --------
  * Ribozyme Pharmaceuticals has applied for and received confidential
    treatment with respect to portions of these exhibits.
 ** Ribozyme Pharmaceuticals has applied for confidential treatment with
    respect to portions of these exhibits.
*** To be filed by amendment.
 
(1) Documents incorporated by reference herein to certain exhibits to Ribozyme
    Pharmaceuticals' Form SB-2 Registration Statement, File No. 333-1908-D.
(2) Documents incorporated by reference herein to certain exhibits to Ribozyme
    Pharmaceuticals' Form 10-QSB for the quarter ended June 30, 1996.
(3) Documents incorporated by reference herein to certain exhibits to Ribozyme
    Pharmaceuticals' Form 10-KSB for the year ended December 31, 1996.
(4) Documents incorporated by reference herein to certain exhibits to Ribozyme
    Pharmaceuticals' Form 8-K dated June 12, 1997.
(5) Documents incorporated by reference herein to certain exhibits to Ribozyme
    Pharmaceuticals' Form SB-2 Registration Statement, dated September 5, 1997,
    File No. 333-34981.
(6) Documents incorporated by reference herein to certain exhibits to Ribozyme
    Pharmaceuticals' Form 10-K for the year ended December 31, 1997.
(7) Documents incorporated by reference herein to certain exhibits to Ribozyme
    Pharmaceuticals' Form 10-Q/A for the quarter ended June 30, 1998.
(8) Documents incorporated by reference herein to certain exhibits to Ribozyme
    Pharmaceuticals' Form 10-Q for the quarter ended September 30, 1998.
(9) Documents incorporated by reference herein to certain exhibits to Ribozyme
    Pharmaceuticals' Form 8-K dated March 19, 1999.
 
  (b) Financial Statement Schedules
 
  All schedules have been omitted because they are not applicable or not
required or the required information is included in the financial statements or
notes thereto.
 
Item 17. Undertakings
 
  The undersigned registrant hereby undertakes:
 
    (1) To file, during any period in which offers or sales are being made, a
  post-effective amendment to this registration statement:
 
      (i) To include any prospectus required by Section 10(a)(3) of the
    Securities Act of 1933;
 
      (ii) To reflect in the prospectus any facts or events arising after
    the effective date of the registration statement (or the most recent
    post-effective amendment thereof) which, individually or in the
    aggregate, represent a fundamental change in the information set forth
    in the registration statement. Notwithstanding the foregoing, any
    increase or decrease in volume of securities offered (if the total
    dollar value of securities offered would not exceed that which was
    registered) and any deviation from the low or high end of the estimated
    maximum offering range may be reflected in the form of prospectus filed
    with the SEC pursuant to Rule 424(b) if, in the aggregate, the changes
    in volume and price represent no more than 20% change in the maximum
    aggregate offering price set forth in the "Calculation of Registration
    Fee" table in the effective registration statement.
 
                                      II-6
<PAGE>
 
      (iii) To include any material with respect to the plan of
    distribution not previously disclosed in the registration statement or
    any material change to such information in the registration statement;
 
    (2) That, for the purpose of determining any liability under the
  Securities Act of 1933, each such post-effective amendment shall be deemed
  to be a new registration statement relating to the securities offered
  therein, and the offering of such securities at that time shall be deemed
  to be the initial bona fide offering thereof.
 
    (3) To remove from registration by means of a post-effective amendment
  any of the securities being registered which remain unsold at the
  termination of the offering.
 
  Insofar as indemnification for liabilities arising under the Securities Act
may be permitted to directors, officers and controlling persons of the
registrant pursuant to the provision described under Item 20 or otherwise, the
registrant has been advised that in the opinion of the SEC such indemnification
is against public policy as expressed in the Securities Act and is, therefore,
unenforceable. In the event that a claim for indemnification against such
liabilities (other than the payment by the registrant of expenses incurred or
paid by a director, officer or controlling person of the registrant in the
successful defense of any action, suit or proceeding) is asserted by such
director, officer or controlling person in connection with the securities being
registered, the registrant will, unless in the opinion of its counsel the
matter has been settled by controlling precedent, submit to a court of
appropriate jurisdiction the question whether such indemnification by it is
against public policy as expressed in the Securities Act and will be governed
by the final adjudication of such issue.
 
 
                                      II-7
<PAGE>
 
                                   SIGNATURES
 
  Pursuant to the requirements of the Securities Act of 1933, the registrant
certifies that it has reasonable grounds to believe that it meets all the
requirements for filing on Form S-l and has duly caused this Form S-1
Registration Statement to be signed on its behalf by the undersigned, thereunto
duly authorized in Boulder, Colorado, on March 25, 1999.
 
                                          Ribozyme Pharmaceuticals, Inc.
 
                                              /s/ Ralph E. Christoffersen
                                          By: _________________________________
                                               Ralph E. Christoffersen, Ph.D.
                                                Chief Executive Officer and
                                                         President
 
  In accordance with the requirements of the Securities Act of 1933, as
amended, this Form S-1 Registration Statement has been signed below by the
following persons in the capacities and on the dates indicated. Each of the
following persons hereby appoints Ralph E. Christoffersen and Lawrence E.
Bullock and each of them, as his attorney-in-fact to (1) execute and file
amendments to this Registration Statement, (2) request acceleration of the
effective date of or withdraw from the registration process this Registration
Statement, or (3) take any other action regarding this Registration Statement
as such attorneys-in-fact, or either of them, may deem appropriate.
 
<TABLE>
<CAPTION>
              Signature                          Title                   Date
              ---------                          -----                   ----
 
<S>                                    <C>                        <C>
   /s/ Ralph E. Christoffersen         Chief Executive Officer      March 25, 1999
______________________________________  and President (Principal
    Ralph E. Christoffersen, Ph.D.      Executive Officer)
 
     /s/ Lawrence E. Bullock           Vice President,              March 25, 1999
______________________________________  Administration Finance,
         Lawrence E. Bullock            Chief Financial Officer
                                        and Secretary (Principal
                                        Financial and Accounting
                                        Officer)
 
    /s/ David T. Morgenthaler          Chairman of the Board of     March 25, 1999
______________________________________  Directors
        David T. Morgenthaler
 
        /s/ Jeremy C. Cook             Director                     March 25, 1999
______________________________________
            Jeremy C. Cook
 
       /s/ Anthony B. Evnin            Director                     March 25, 1999
______________________________________
       Anthony B. Evnin, Ph.D.
 
        /s/ David Ichikawa             Director                     March 25, 1999
______________________________________
            David Ichikawa
 
        /s/ Anders Wiklund             Director                     March 25, 1999
______________________________________
            Anders Wiklund
</TABLE>
 
                                      II-8
<PAGE>
 
                                 EXHIBIT INDEX
 
<TABLE>
<CAPTION>
 Exhibit
 Number                               Description
 -------                              -----------
 <C>     <S>
   1.1   Form of Placement Agency Agreement dated     , 1999, between Ribozyme
         Pharmaceuticals and Hambrecht & Quist LLC
 
   1.2   Form of Escrow Agreement dated     , 1999, between Ribozyme
         Pharmaceuticals, Hambrecht & Quist LLC and Citibank N.A.
 
   3.1   Amended and Restated Certificate of Incorporation of Ribozyme
         Pharmaceuticals dated April 17, 1996(5)
 
   3.2   Bylaws of Ribozyme Pharmaceuticals, as amended(1)
 
   4.1   Specimen Stock Certificate(1)
 
   5.1   Opinion of Rothgerber Johnson & Lyons LLP
 
  10.1   Form of Indemnity Agreement entered into between Ribozyme
         Pharmaceuticals and its directors and officers, with related
         schedule(1)
 
  10.2   Ribozyme Pharmaceuticals' Incentive Stock Option Plan, including form
         of Incentive Stock Option Agreement(1)
 
  10.3   Ribozyme Pharmaceuticals' Non-Qualified Stock Option Plan, including
         form of Non-Qualified Stock Option Agreement(1)
 
  10.4   Ribozyme Pharmaceuticals' 1996 Stock Option Plan, including forms of
         Incentive Stock Option and Nonstatutory Stock Option Agreements(1)
 
  10.5   Ribozyme Pharmaceuticals' 1996 Employee Stock Purchase Plan(1)
 
  10.6   Employment Agreement dated January 1, 1997, between Ribozyme
         Pharmaceuticals and Ralph E. Christoffersen(5)
 
  10.7   Incentive Stock Option Agreement between Ribozyme Pharmaceuticals and
         Ralph E. Christoffersen dated December 23, 1992(1)
 
  10.8   Incentive Stock Option Agreement between Ribozyme Pharmaceuticals and
         Ralph E. Christoffersen dated September 23, 1994(1)
 
  10.9   Warrant Purchase Agreement dated March 15, 1995, between Ribozyme
         Pharmaceuticals and Hambrecht & Quist Guaranty Finance(1)
 
  10.10  Warrant to Purchase Common Stock dated March 15, 1995, issued to
         Hambrecht & Quist Guaranty Finance(1)
 
  10.11  Warrant to Purchase Common Stock dated February 22, 1993, issued to
         LINC Scientific Leasing(1)
 
  10.12  Warrant to Purchase Common Stock dated July 30, 1993, issued to
         Douglas E. Olson(1)
 
  10.13  Warrant to Purchase Common Stock dated July 30, 1993, issued to
         Richard J. Warburg and Ruth P. Warburg(1)
 
  10.14  Warrant to Purchase Common Stock dated December 28, 1994, issued to
         Competitive Technologies, Inc.(1)
 
  10.15  Warrant to Purchase Common Stock dated December 29, 1995, issued to
         Silicon Valley Bank(1)
 
  10.16  Warrant to Purchase Common Stock dated July 26, 1996, issued to
         Silicon Valley Bank(1)
 
  10.17  Warrant to Purchase Common Stock dated April 17, 1996, issued to
         Chiron Corporation(1)
 
  10.18  Collaborative Research, Development and Commercialization Agreement
         dated July 15, 1994, between Ribozyme Pharmaceuticals and Chiron
         Corporation(1)
 
</TABLE>
<PAGE>
 
<TABLE>
<CAPTION>
 Exhibit
 Number                                Description
 -------                               -----------
 <C>     <S>
  10.19  Research Collaboration and Licensing Agreement dated November 1, 1995,
         between Ribozyme Pharmaceuticals and Pharmacia Biotech, AB(1)
 
  10.20  Research and Development Collaboration Agreement dated April 19, 1993,
         between Ribozyme Pharmaceuticals and Parke-Davis Division of Warner-
         Lambert Company(1)
 
  10.21  First Amendment to the Research and Development Collaboration
         Agreement dated April 17, 1995, between Ribozyme Pharmaceuticals and
         Parke-Davis Division of Warner-Lambert Company(1)
 
  10.22  Second Amendment to the Research and Development Collaboration
         Agreement dated February 8, 1996, between Ribozyme Pharmaceuticals and
         Parke-Davis Division of Warner-Lambert Company(1)
 
  10.23  Financing Agreement dated March 16, 1995, among Wilderness Place
         Holdings L.L.C., Hambrecht & Quist Guaranty Finance, L.P. and Ribozyme
         Pharmaceuticals(1)
 
  10.24  Negotiable Promissory Note dated October 7, 1992, between Ribozyme
         Pharmaceuticals and Ralph Christoffersen and Addendum dated June 25,
         1993(1)
 
  10.25  Employment Agreement dated January 8, 1996, between Ribozyme
         Pharmaceuticals and Lawrence E. Bullock(1)
 
  10.26  Promissory Note dated February 8, 1996, between Ribozyme
         Pharmaceuticals and Lawrence E. Bullock(1)
 
  10.27  Lease for Real Property dated May 20, 1992, between Aero-Tech
         Investments and Ribozyme Pharmaceuticals(1)
 
  10.28  Non-Disturbance and Attornment Agreement dated March 31, 1995, among
         General American Life Insurance Company, Aero-Tech Investments,
         Wilderness Place Holdings L.L.C. and Ribozyme Pharmaceuticals(1)
 
  10.29  Master Lease Agreement dated September 2, 1992, between Ribozyme
         Pharmaceuticals and LINC Scientific Leasing(1)
 
  10.30  Loan and Security Agreement dated February 28, 1994, between Ribozyme
         Pharmaceuticals and Silicon Valley Bank(1)
 
  10.31  Loan Modification Agreement dated December 21, 1994, between Ribozyme
         Pharmaceuticals and Silicon Valley Bank(1)
 
  10.32  Loan and Security Agreement dated December 29, 1995, between Ribozyme
         Pharmaceuticals and Silicon Valley Bank and MMC/GATX Partnership No.
         1(1)
 
  10.33  Warrant to Purchase Common Stock dated December 29, 1995, issued to
         MMC/GATX Partnership No. 1(1)
 
  10.34  Agreement dated February 29, 1996, between Ribozyme Pharmaceuticals
         and Chiron Corporation relating to research and development funding(1)
 
  10.35  Amendments to original Employment Agreements between Ribozyme
         Pharmaceuticals and Ralph E. Christoffersen, Lawrence E. Bullock and
         Nassim Usman, pursuant to letters dated November 14, 1996, November
         22, 1996, and December 15, 1996(3)
 
  10.36  Promissory Note dated June 4, 1996, between Ribozyme Pharmaceuticals
         and Nassim Usman(3)
 
  10.37  Amendment to Lease for Real Property dated March 13, 1997, between
         Aero-Tech Investments and Ribozyme Pharmaceuticals(3)
 
  10.38  Employment Agreement dated May 2, 1996, between Ribozyme
         Pharmaceuticals and Nassim Usman(2)
 
</TABLE>
<PAGE>
 
<TABLE>
<CAPTION>
 Exhibit
 Number                                Description
 -------                               -----------
 <C>     <S>
  10.39  Collaboration Agreement Regarding Use of Ribozymes to Determine Gene
         Function dated May 13, 1996, between Ribozyme Pharmaceuticals and
         Chiron Corporation(2)
 
  10.40  Amended and Restated License Agreement dated November 20, 1996,
         between Ribozyme Pharmaceuticals, University Research Corporation,
         University of Colorado and United States Biochemical Corporation(3)*
 
  10.41  Amended and Restated Sublicense Agreement dated November 20, 1996,
         between Ribozyme Pharmaceuticals and United States Biochemical
         Corporation(3)*
 
  10.42  Amended and Restated License Agreement dated November 20, 1996,
         between Ribozyme Pharmaceuticals and Competitive Technologies,
         Incorporated(3)*
 
  10.43  Memorandum of Understanding dated March 1, 1996, between Ribozyme
         Pharmaceuticals and DowElanco(1)
 
  10.44  Stock Subscription Agreement dated September 1996 between Ribozyme
         Pharmaceuticals and University of Research Corporation(3)*
 
  10.45  Stock Subscription Agreement dated November 20, 1996, between Ribozyme
         Pharmaceuticals and United States Biochemical Corporation(3)*
 
  10.46  Assignment of License and Restated License Agreement dated November
         20, 1996, among Ribozyme Pharmaceuticals, United States Biochemical
         Corporation and Competitive Technologies(3)*
 
  10.47  Letter Agreement dated May 22, 1996, between Ribozyme Pharmaceuticals
         and ALZA Corporation(3)*
 
  10.48  Research and Development Collaboration Agreement dated December 2,
         1996, between Ribozyme Pharmaceuticals and Protogene Laboratories(3)*
 
  10.49  License Agreement dated February 14, 1997, between Ribozyme
         Pharmaceuticals and IntelliGene, Ltd.(3)*
 
  10.50  Subscription Agreement dated April 17, 1995, between Ribozyme
         Pharmaceuticals and Parke-Davis Division of Warner-Lambert Company(1)
 
  10.51  Stock Purchase Agreement dated June 28, 1995, among Ribozyme
         Pharmaceuticals and investors(1)
 
  10.52  Agreement dated March 1, 1996, between Ribozyme Pharmaceuticals and
         DowElanco Corporation relating to the conversion of preferred stock(1)
 
  10.53  Stock Subscription Agreement dated October 30, 1995, between Ribozyme
         Pharmaceuticals and Gewestelijke Investeringsmaatschappij voor
         Vlaanderon n.v.(1)
 
  10.54  Research, License, Supply and Royalty Agreement between Schering
         Aktiengesellschaft and Ribozyme Pharmaceuticals dated April 9,
         1997(4)*
 
  10.55  Purchase Agreement dated April 9, 1997, among Ribozyme
         Pharmaceuticals, Schering Berlin Venture Corporation and Schering
         Aktiengesellschaft(4)*
 
  10.56  Employment Agreement dated February 27, 1997, between Ribozyme
         Pharmaceuticals and Alene Holzman(5)
 
  10.57  Employment Agreement dated July 5, 1997, between Ribozyme
         Pharmaceuticals and Thomas Rossing(5)
 
  10.58  Executive Bonus Plan dated March 27, 1998(6)
 
  10.59  Research, Collaboration and License Agreement dated May 19, 1998,
         between Ribozyme Pharmaceuticals and Roche Bioscience, a division of
         Syntex (U.S.A.) Inc.(7)*
 
</TABLE>
<PAGE>
 
<TABLE>
<CAPTION>
 Exhibit
 Number                                Description
 -------                               -----------
 <C>     <S>
  10.60  Employment Agreement dated September 8, 1998, between Ribozyme
         Pharmaceuticals and Nassim Usman(7)
 
  10.61  Participation Agreement dated August 31, 1998, as amended, and related
         documents between Ribozyme Pharmaceuticals and Atugen Biotechnology
         GmbH(8)**
 
  10.62  Research Collaboration and License Agreement dated March 17, 1999,
         between Ribozyme Pharmaceuticals and Eli Lilly and Company***
 
  23.1   Consent of Ernst & Young LLP, Independent Auditors
 
  23.2   Consent of Rothgerber Johnson & Lyons LLP (included in Exhibit 5.1)
 
  24.1   Power of attorney (included on the signature page of this Registration
         Statement)
</TABLE>
- --------
*  Ribozyme Pharmaceuticals has applied for and received confidential treatment
   with respect to portions of these exhibits.
**  Ribozyme Pharmaceuticals has applied for confidential treatment with
    respect to portions of these exhibits.
***  To be filed by amendment.
(1)  Documents incorporated by reference herein to certain exhibits to Ribozyme
     Pharmaceuticals' Form SB-2 Registration Statement, File No. 333-1908-D.
(2)  Documents incorporated by reference herein to certain exhibits to Ribozyme
     Pharmaceuticals' Form 10-QSB for the quarter ended June 30, 1996.
(3)  Documents incorporated by reference herein to certain exhibits to Ribozyme
     Pharmaceuticals' Form 10-KSB for the year ended December 31, 1996.
(4)  Documents incorporated by reference herein to certain exhibits to Ribozyme
     Pharmaceuticals' Form 8-K dated June 12, 1997.
(5)  Documents incorporated by reference herein to certain exhibits to Ribozyme
     Pharmaceuticals' Form SB-2 Registration Statement, dated September 5,
     1997, File No. 333-34981.
(6)  Documents incorporated by reference herein to certain exhibits to Ribozyme
     Pharmaceuticals' Form 10-K for the year ended December 31, 1997.
(7)  Documents incorporated by reference herein to certain exhibits to Ribozyme
     Pharmaceuticals' Form 10-Q/A for the quarter ended June 30, 1998.
(8)  Documents incorporated by reference herein to certain exhibits to Ribozyme
     Pharmaceuticals' Form 10-Q for the quarter ended September 30, 1998.
(9)  Documents incorporated by reference herein to certain exhibits to Ribozyme
     Pharmaceuticals' Form 8-K dated March 19, 1999.

<PAGE>
 
                                                                     EXHIBIT 1.1

                                                                         [DRAFT]
                         RIBOZYME PHARMACEUTICALS, INC.
                                        

          1,800,000 Shares of Common Stock, $0.01 par value per share
                                        

                           PLACEMENT AGENCY AGREEMENT
                           --------------------------


                                                April __, 1999


HAMBRECHT & QUIST LLC
One Bush Street
San Francisco, CA  94104,
 As Placement Agent

Dear Sir or Madam:

          Ribozyme Pharmaceuticals, Inc., a Delaware corporation (the
"Company"), proposes to issue and sell 1,800,000 shares (the "Shares") of common
stock, par value $.01 per share (the "Common Stock"), to certain investors
(collectively, the "Investors"). The Company desires to engage you as its
placement agent (the "Placement Agent") in connection with such issuance and
sale. The Shares are more fully described in the Registration Statement (as
hereinafter defined).

          The Company hereby confirms as follows its agreements with the
Placement Agent.

          1.  Agreement to Act as Placement Agent.  On the basis of the 
              ----------------------------------- 
representations, warranties and agreements of the Company herein contained and
subject to all the terms and conditions of this Agreement, the Placement Agent
agrees to act as the Company's exclusive placement agent in connection with the
issuance and sale, on a best efforts basis, by the Company of the Shares to the
Investors. The Company shall pay to the Placement Agent 8.0% of the proceeds
received by the Company from the sale of the Shares as set forth on the cover
page of the Prospectus (as hereinafter defined); provided, however, that the
Company shall not be obligated to pay the Placement Agent a fee in respect of
sales to the investors identified on Schedule 1 to this Agreement.

          2.  Delivery and Payment.  Concurrently with the execution and 
              --------------------   
delivery of this Agreement, the Company, the Placement Agent, and Citibank N.A.,
as escrow agent (the "Escrow Agent"), shall enter into an Escrow Agreement
substantially in the form of Exhibit A attached hereto (the "Escrow Agreement"),
pursuant to which an escrow account will be established, at the Company's
expense, for the benefit of the Investors (the "Escrow Account"). Prior to the
Closing Date (defined below), (i) each of the Investors will deposit an amount
equal to the price per Share as shown on the cover page of the Prospectus (as
hereinafter defined) 
<PAGE>
 
multiplied by the number of Shares purchased by it in the Escrow Account, and
(ii) the Escrow Agent will notify the Company and the Placement Agent in writing
whether the Investors have deposited in the Escrow Account funds in the amount
equal to the proceeds of the sale of all of the Shares offered hereby (the
"Requisite Funds") into the Escrow Account. At 10:00 a.m., New York City time,
on April __, 1999, or at such other time on such other date as may be agreed
upon by the Company and the Placement Agent but in no event prior to the date on
which the Escrow Agent shall have received all of the Requisite Funds (such date
is hereinafter referred to as the "Closing Date"), the Escrow Agent will release
the Requisite Funds from the Escrow Account for collection by the Company and
the Placement Agent as provided in the Escrow Agreement and the Company shall
deliver the Shares to the Investors, which delivery may be made through the
facilities of the Depository Trust Company. The closing (the "Closing") shall
take place at the office of Stroock & Stroock & Lavan LLP, 180 Maiden Lane, New
York, New York 10038. All actions taken at the Closing shall be deemed to have
occurred simultaneously.

          Certificates evidencing the Shares shall be in definitive form and
shall be registered in such names and in such denominations as the Placement
Agent shall request by written notice to the Company. For the purpose of
expediting the checking and packaging of certificates for the Shares, the
Company agrees to make such certificates available for inspection at least 24
hours prior to delivery to the Investors.

          3.  Representations and Warranties of the Company.  The Company 
              ---------------------------------------------   
represents and warrants and covenants to the Placement Agent that:

                (a) A registration statement (Registration No. 333-_____) on
Form S-1 relating to the Shares, including a preliminary prospectus relating to
the Shares and such amendments to such registration statement as may have been
required to the date of this Agreement, has been prepared by the Company, under
the provisions of the Securities Act of 1933, as amended (the "Act"), and the
rules and regulations (collectively referred to as the "Rules and Regulations")
of the Securities and Exchange Commission (the "Commission") thereunder, and has
been filed with the Commission. The Commission has not issued any order
preventing or suspending the use of the Prospectus or the Preliminary Prospectus
(as defined below). The term "Preliminary Prospectus" as used herein means a
preliminary prospectus relating to the Shares as contemplated by Rule 430 or
Rule 430A ("Rule 430A") of the Rules and Regulations included at any time as
part of the registration statement. Copies of such registration statement and
amendments and of each related Preliminary Prospectus have been delivered to the
Placement Agent. If such registration statement has not become effective, a
further amendment to such registration statement, including a form of final
prospectus, necessary to permit such registration statement to become effective
will be filed promptly by the Company with the Commission. If such registration
statement has become effective, a final prospectus relating to the Shares
containing information permitted to be omitted at the time of effectiveness by
Rule 430A will be filed by the Company with the Commission in accordance with
Rule 424(b) of the Rules and Regulations promptly after execution and delivery
of this Agreement. The term "Registration Statement" means the registration
statement as amended at the time it becomes or became effective (the "Effective
Date"), including all material 

                                       2
<PAGE>
 
incorporated by reference therein and any information deemed to be included by
Rule 430A. The term "Prospectus" means the prospectus relating to the Shares as
first filed with the Commission pursuant to Rule 424(b) of the Rules and
Regulations or, if no such filing is required, the form of final prospectus
relating to the Shares included in the Registration Statement at the Effective
Date, in either case, including all material, if any, incorporated by reference
therein.

                (b) On the date that any Preliminary Prospectus was filed with
the Commission, the date the Prospectus is first filed with the Commission
pursuant to Rule 424(b) (if required), at all times subsequent to and including
the Closing Date and when any post-effective amendment to the Registration
Statement becomes effective or any amendment or supplement to the Prospectus is
filed with the Commission, the Registration Statement, each Preliminary
Prospectus and the Prospectus (as amended or as supplemented if the Company
shall have filed with the Commission any amendment or supplement thereto),
including the financial statements included in the Prospectus, did or will
comply with all applicable provisions of the Act and the Rules and Regulations
and did or will contain all statements required to be stated therein in
accordance with the Act and the Rules and Regulations. On the Effective Date and
when any post-effective amendment to the Registration Statement becomes
effective, no part of the Registration Statement or any such amendment did or
will contain any untrue statement of a material fact or omit to state a material
fact required to be stated therein or necessary in order to make the statements
therein not misleading. At the Effective Date, at the date the Prospectus or any
amendment or supplement to the Prospectus is filed with the Commission and at
the Closing Date the Prospectus did not or will not contain any untrue statement
of a material fact or omit to state a material fact necessary to make the
statements therein, in the light of the circumstances under which they were
made, not misleading. The Company has not distributed any offering material in
connection with the offering or sale of the Common Stock, other than the
Registration Statement, the Preliminary Prospectus and the Prospectus.

                (c) The Company is, and at the Closing Date will be, duly
organized, validly existing and in good standing under the laws of Delaware. The
Company has no subsidiaries. The Company has, and at the Closing Date will have,
full power and authority to conduct all the activities conducted by it, to own
or lease all the assets owned or leased by it and to conduct its business as
described in the Registration Statement and the Prospectus (or, if the
Prospectus is not in existence, in the most recent Preliminary Prospectus). The
Company is, and at the Closing Date will be, duly licensed or qualified to do
business and in good standing as a foreign organization in all jurisdictions in
which the nature of the activities conducted by it or the character of the
assets owned or leased by it makes such licensing or qualification necessary,
except where the failure to be so licensed or qualified will not have a material
adverse effect on the ability of the Company to carry on its business as
presently conducted. Except as disclosed in the Registration Statement and on
Schedule 3(c) to this Agreement, the Company does not own, and at the Closing
Date will not own, directly or indirectly, any shares of stock or any other
equity or long-term debt securities of any corporation or have any equity
interest in any firm, partnership, joint venture, association or other entity.
Complete and correct copies of the articles or certificate of incorporation and
of the bylaws of the Company and all 

                                       3
<PAGE>
 
amendments thereto have been delivered to the Placement Agent, and no changes
therein will be made subsequent to the date hereof and prior to the Closing
Date. Atugen Biotechnology GmbH ("Atugen") has been duly organized or formed and
is validly existing as a corporation in good standing under the laws of its
jurisdiction of formation. Atugen is duly qualified and in good standing as a
foreign corporation in each jurisdiction in which the character or location of
its properties (owned, leased or licensed) or the nature or conduct of its
business makes such qualification necessary, except for those failures to be so
qualified or in good standing which will not have a material effect on Atugen.
All of the shares of issued capital stock set forth on Schedule 3(c) as owned by
the Company are owned free and clear of any lien, encumbrance, claim, security
interest, restriction on transfer, shareholders' agreement, voting trust other
defect of title whatsoever.

                (d) The issued and outstanding shares of capital stock of the
Company have been validly issued, are fully paid and nonassessable and, other
than as set forth in the Registration Statement, are not subject to any
preemptive or similar rights. Except as set forth in the Registration Statement
and the Prospectus such shares are not subject to any preemptive or similar
rights. The Company has an authorized, issued and outstanding capitalization as
set forth in the Prospectus as of the dates referred to therein. The description
of the securities of the Company in the Registration Statement and the
Prospectus is, and at the Closing Date will be, complete and accurate in all
respects. Except as set forth in the Registration Statement and the Prospectus,
as of the date referred to therein, the Company did not have outstanding any
options to purchase, or any rights or warrants to subscribe for, or any
securities or obligations convertible into, or exchangeable for, or any
contracts or commitments to issue or sell, any shares of capital stock or other
securities.

                (e) The Company has full legal right, power and authority to
enter into this Agreement and perform the transactions contemplated hereby. This
Agreement has been duly authorized and validly executed and delivered by the
Company and is a legal, valid and binding agreement of the Company enforceable
against the Company in accordance with its terms, subject to the effect of
applicable bankruptcy, insolvency or similar laws affecting creditors' rights
generally and equitable principles of general applicability. The Escrow
Agreement has been duly authorized and validly executed and delivered by the
Company and is a legal, valid and binding agreement of the Company enforceable
against the Company in accordance with its terms, subject to the effect of
applicable bankruptcy, insolvency or similar laws affecting creditors' rights
generally and equitable principles of general applicability.

                (f) The issuance and sale of the Shares have been duly
authorized by the Company, and the Shares, when issued and paid for in
accordance with this Agreement, will be duly and validly issued, fully paid and
nonassessable and will not be subject to preemptive or similar rights. The
holders of the Shares will not be subject to personal liability by reason of
being such holders. The Shares, when issued, will conform in all material
respects to the description thereof set forth in the Prospectus.

                (g) The financial statements and the related notes included in
the Registration Statement and the Prospectus present fairly, in all material
respects, the financial 

                                       4
<PAGE>
 
condition of the Company as of the dates thereof and the results of its
operations and cash flows at the dates and for the periods covered thereby in
conformity with generally accepted accounting principles ("GAAP"). No other
financial statements or schedules of the Company or any other entity are
required by the Act or the Rules and Regulations to be included in the
Registration Statement or the Prospectus. Ernst & Young LLP (the "Accountants"),
who have reported on such financial statements and schedules, are independent
accountants with respect to the Company as required by the Act and the Rules and
Regulations. The financial statements of the Company and the related notes and
schedules included in the Registration Statement and the Prospectus have been
prepared in conformity with the requirements of the Act and the Rules and
Regulations and present fairly the information shown therein.

                (h) The Company maintains a system of internal accounting
controls sufficient to provide reasonable assurance that (i) transactions are
executed in accordance with management's general or specific authorization; (ii)
transactions are recorded as necessary to permit preparation of financial
statements in conformity with generally accepted accounting principles and to
maintain accountability for assets; (iii) access to assets is permitted only in
accordance with management's general or specific authorization; and (iv) the
recorded accountability for assets is compared with existing assets at
reasonable intervals and appropriate action is taken with respect to any
differences.

                (i) Subsequent to the respective dates as of which information
is given in the Registration Statement and the Prospectus and prior to the
Closing Date, except as set forth in or contemplated by the Registration
Statement and the Prospectus, (i) there has not been and will not have been any
change in the capitalization of the Company other than non-material changes in
the ordinary course of business, or any material adverse change in the business,
properties, business prospects, condition (financial or otherwise) or results of
operations of the Company arising for any reason whatsoever, (ii) the Company
has not incurred nor will it incur any material liabilities or obligations,
direct or contingent, nor has the Company entered into nor will it enter into
any material transactions other than pursuant to this Agreement, the
Registration Statement and the transactions referred to herein and therein and
(iii) the Company has not and will not have paid or declared any dividends or
other distributions of any kind on any class of its capital stock.

                (j) Any real property and buildings held under lease to the
Company are held or leased by the Company under valid, binding and enforceable
leases conforming to the description thereof set forth in or incorporated by
reference into the Registration Statement and the Prospectus, with such
exceptions as do not materially interfere with the use made and proposed to be
made of such property and buildings by the Company.

                (k) The Company is not, nor upon completion of the transactions
contemplated herein will it be, an "investment company" or an "affiliated
person" of, or "promoter" or "principal underwriter" for, an "investment
company," as such terms are defined in the Investment Company Act of 1940, as
amended (the "Investment Company Act").

                                       5
<PAGE>
 
                (l) Except as set forth or referred to in the Registration
Statement and the Prospectus, there are no actions, suits or proceedings
pending, or to the Company's knowledge, threatened against or affecting the
Company or any of its officers in their capacity as such, before or by any
Federal or state court, commission, regulatory body, administrative agency or
other governmental body, domestic or foreign, which is reasonably expected by
management of the Company to materially adversely affect the business,
properties, prospects, condition (financial or otherwise) or results of
operations of the Company.

                (m) The Company has, and at the Closing Date will have, (i) all
governmental licenses, permits, consents, orders, approvals and other
authorizations necessary to carry on its business as presently conducted except
where the failure to have such governmental licenses, permits, consents, orders,
approvals and other authorizations would not have a material adverse effect on
the business, properties, prospects, condition (financial or otherwise) or
results of operation of the Company, (ii) complied with all laws, regulations
and orders applicable to either it or its business, except where the failure to
so comply would not have a material adverse effect on the business, properties,
prospects, condition (financial or otherwise) or results of operations of the
Company, and (iii) performed all its obligations required to be performed, and
is not, and at the Closing Date will not be, to the Company's best knowledge, in
default, under any indenture, mortgage, deed of trust, voting trust agreement,
loan agreement, bond, debenture, note agreement, lease, contract or other
agreement or instrument (collectively, a "contract or other agreement") to which
it is a party or by which its property is bound or affected, except as otherwise
set forth in the Registration Statement and the Prospectus and except where such
default would not have a material adverse effect on the business, properties,
prospects, condition (financial or otherwise) or results of operations of the
Company, and, to the Company's best knowledge, no other party under any material
contract or other agreement to which it is a party is in default in any respect
thereunder. The Company is not in violation of any provision of its
organizational or governing documents.

                (n) The Company has all corporate power and authority to enter
into this Agreement and the Escrow Agreement, and to carry out the provisions
and conditions hereof and thereof, and all consents, authorizations, approvals
and orders required in connection herewith and therewith have been obtained,
except such as have been obtained, such as may be required under state
securities or Blue Sky Laws or the by-laws and rules of the National Association
of Securities Dealers, Inc. (the "NASD").

                (o) Neither (i) the issuance, offering and sale of the Shares
pursuant hereto, nor (ii) the compliance by the Company with the other
provisions hereof require the consent, approval, authorization, registration or
qualification of or with any governmental authority, except such as have been
obtained, such as may be required under state securities or Blue Sky laws or the
bylaws and rules of the NASD and, if the Registration Statement is not effective
under the Act as of the time of execution hereof, such as may be required (and
shall be obtained as provided in this Agreement) under the Act.

                (p) Neither the execution of this Agreement or the Escrow
Agreement, nor the issuance, offering or sale of the Shares, nor the
consummation of any of the 

                                       6
<PAGE>
 
transactions contemplated herein or in the Escrow Agreement, nor the compliance
by the Company with the terms and provisions hereof or thereof will conflict
with, or will result in a breach of, any of the terms and provisions of, or has
constituted or will constitute a default under, or has resulted in or will
result in the creation or imposition of any lien, charge or encumbrance upon any
property or assets of the Company pursuant to the terms of any contract or other
agreement to which the Company may be bound or to which any of the property or
assets of the Company is subject, except such conflicts, breaches or defaults as
may have been waived; nor will such action result in any violation of the
provisions of the Company's organizational or governing documents, or any
statute or any order, rule or regulation applicable to the Company or of any
court or of any federal, state or other regulatory authority or other government
body having jurisdiction over the Company.

                (q) There is no document or contract of a character required to
be described in the Registration Statement or the Prospectus or to be filed as
an exhibit to the Registration Statement which is not described or filed as
required. All such contracts to which the Company is a party have been duly
authorized, executed and delivered by the Company, constitute valid and binding
agreements of the Company, and are enforceable against the Company in accordance
with the terms thereof, subject to the effect of applicable bankruptcy,
insolvency or similar laws affecting creditors' rights generally and equitable
principles of general applicability.

                (r) No statement, representation or warranty made by the Company
in this Agreement or made in any certificate or document required by this
Agreement or the Escrow Agreement to be delivered to the Placement Agent, the
Investors or the Escrow Agent was or will be, when made, inaccurate, untrue or
incorrect in any material respect.

                (s) The Company and its directors, officers or controlling
persons have not taken, directly or indirectly, any action intended, or which
might reasonably be expected, to cause or result, under the Act or otherwise,
in, or which has constituted, stabilization or manipulation of the price of any
security of the Company to facilitate the sale or resale of the Common Stock.

                (t) No holder of securities of the Company has rights to the
registration of any securities of the Company as a result of the filing of the
Registration Statement, other than rights which are not exercisable due to the
Placement Agent's determination to include only securities sold directly from
the Company, except for such rights as have been waived or those other rights
which have been disclosed to the Placement Agent.

                (u) The Common Stock is currently listed on the Nasdaq National
Market (the "NNM").

                (v) The Company is not involved in any material labor dispute
nor is any such dispute known by the Company to be threatened.

                                       7
<PAGE>
 
                (w) Except as set forth in the Registration Statement and the
Prospectus, the business, operations of the Company have been and are being
conducted in compliance with all applicable laws, ordinances, rules,
regulations, licenses, permits, approvals, plans, authorizations or requirements
relating to occupational safety and health, or pollution, or protection of
health or the environment (including, without limitation, those relating to
emissions, discharges, releases or threatened releases of pollutants,
contaminants or hazardous or toxic substances, materials or wastes into ambient
air, surface water, groundwater or land, or relating to the manufacture,
processing, distribution, use, treatment, storage, disposal, transport or
handling of chemical substances, pollutants, contaminants or hazardous or toxic
substances, materials or wastes, whether solid, gaseous or liquid in nature) of
any governmental department, commission, board, bureau, agency or
instrumentality of the United States, any state or political subdivision
thereof, or any foreign jurisdiction, and all applicable judicial or
administrative agency or regulatory decrees, awards, judgments and orders
relating thereto, except where the failure to be in such compliance will not,
individually or in the aggregate, have a material adverse effect on the ability
of the Company to carry on its business as presently conducted; and the Company
has not received any notice from any governmental instrumentality or any third
party alleging any material violation thereof or liability thereunder
(including, without limitation, liability for costs of investigating or
remediating sites containing hazardous substances and/or damages to natural
resources).

                (x) Except as disclosed in or specifically contemplated by the
Registration Statement, (i) the Company owns or has obtained valid and
enforceable licenses or options for the inventions, patent applications,
patents, trademarks (both registered and unregistered), tradenames, copyrights
and trade secrets necessary for the conduct of the Company's business as
currently conducted and as the Registration Statement indicates the Company
contemplates conducting (collectively, the "Intellectual Property"); and (ii) to
the Company's knowledge (for each of the following subsections (a) through (e)):
(a) there are no third parties who have any ownership rights to any Intellectual
Property that is owned by, or has been licensed to, the Company for the products
and services described in the Registration Statement that would preclude the
Company from conducting its businesses as currently conducted and as the
Registration Statement indicates the Company contemplates conducting, except for
the ownership rights of the owners of the Intellectual Property licensed or
optioned by the Company; (b) there are currently no sales of any products that
would constitute an infringement by third parties of any Intellectual Property
owned, licensed or optioned by the Company; (c) there is no pending or
threatened action, suit, proceeding or claim by others challenging the rights of
the Company in or to any Intellectual Property owned, licensed or optioned by
the Company; (d) there is no pending or threatened action, suit, proceeding or
claim by others challenging the validity or scope of any Intellectual Property
owned, licensed or optioned by the Company, other than non-material claims; and
(e) there is no pending or threatened action, suit, proceeding or claim by
others that the Company infringe or otherwise violate any patent, trademark,
copyright, trade secret or other proprietary right of others, other than non-
material claims.

                (y) The Company has filed all necessary federal, state and
foreign income and franchise tax returns and has paid or accrued all taxes shown
as due thereon, and the Company 

                                       8
<PAGE>
 
has no knowledge of any tax deficiency which has been or might be asserted or
threatened against it which could have a material adverse effect on the
business, properties, prospects, condition (financial or otherwise) or results
of operations of the Company.

          (aa)  On the Closing Date, all stock transfer or other taxes (other
than income taxes) which are required to be paid in connection with the sale and
transfer of the Shares to be sold  hereunder will be, or will have been, fully
paid or provided for by the Company and all laws imposing such taxes will be or
will have been fully complied with.

          (bb)  The Company maintains insurance of the types and in the amounts
that the Company reasonably believes is adequate for its business, including,
but not limited to, insurance covering all real and personal property owned or
leased by the Company against theft, damage, destruction, acts of vandalism and
all other risks customarily insured against by similarly situated companies, all
of which insurance is in full force and effect.

          (cc)  The Company has not at any time since its incorporation,
directly or indirectly, (i) made any unlawful contribution to any candidate for
public office, or failed to disclose fully any contribution in violation of law,
or (ii) made any payment to any federal or state governmental officer or
official, or other person charged with similar public or quasi-public duties,
other than payments required or permitted by the laws of the United States or
any jurisdiction thereof.

          (dd)  The Company has initiated a review and assessment of all areas
within its business and operations that could be adversely affected by the "Year
2000 Problem" (that is, the risk that computer applications used by the Company
may be unable to recognize and perform properly date-sensitive functions
involving certain dates prior to and any date after December 31, 1999).  Based
on the foregoing, the Company believes that the computer applications that are
currently material to its business and operations are reasonably expected to be
able to perform properly date-sensitive functions for all dates before and after
January 1, 2000, except to the extent that a failure to do so would not
reasonably be expected to have a material adverse effect on the business,
properties, prospects, condition (financial or otherwise) or results of
operations of the Company.

          (ee)  Each officer and director of the Company listed on Exhibit B
hereto has delivered to the Placement Agent an agreement in the form of
Attachment A hereto to the effect that he or she will not, for a period of 90
days after the date hereof, without the prior written consent of the Placement
Agent, offer to sell, sell, contract to sell, grant any option to purchase or
otherwise dispose (or announce any offer, sale, grant of any option to purchase
or other disposition) of any shares of capital stock, directly or indirectly, of
the Company or securities convertible into, or exchangeable or exercisable for,
shares of capital stock of the Company.

          (ff)  The Company has delivered to the Placement Agent an agreement in
the form of Attachment B hereto to the effect that it will not, for a period of
90 days after the date hereof, without the prior written consent of the
Placement Agent, offer to sell, sell, contract to sell,  grant any option to
purchase or otherwise dispose (or announce any offer, sale, grant of 

                                       9
<PAGE>
 
any option to purchase or other disposition) of any shares of capital stock of
the Company or securities convertible into, or exchangeable or exercisable for,
shares of capital stock of the Company, except with respect to the issuance of
shares of Common Stock upon the exercise of stock options and warrants
outstanding as of the date hereof the and the issuance of Common Stock or stock
options under any benefit plan of the Company.

        4.  Agreements of the Company.  The Company covenants and agrees with 
            -------------------------   
the Placement Agent as follows:

                (a) The Company will not, either prior to the Effective Date or
thereafter during such period as the Prospectus would be required by law to be
delivered in connection with sales of the Shares by an underwriter or dealer,
file any amendment or supplement to the Registration Statement or the
Prospectus, unless a copy thereof shall first have been submitted to the
Placement Agent within a reasonable period of time prior to the filing thereof
and the Placement Agent shall not have objected thereto in good faith.

                (b) The Company will use its best efforts to cause the
Registration Statement to become effective, and will notify the Placement Agent
promptly, and will confirm such advice in writing, (1) when the Registration
Statement has become effective and when any post-effective amendment thereto
becomes effective, (2) of any request by the securities or other governmental
authority (including, without limitation, the Commission) of any jurisdiction
for amendments or supplements to the Registration Statement or the Prospectus or
for additional information, (3) of the issuance by any securities or other
governmental authority (including, without limitation, the Commission) of any
jurisdiction of any stop order suspending the effectiveness of the Registration
Statement or the initiation of any proceedings for that purpose or the threat
thereof, (4) of the happening of any event during the period mentioned in
Section 4(a) that in the judgment of the Company makes any statement made in the
Registration Statement or the Prospectus untrue or that requires the making of
any changes in the Registration Statement or the Prospectus in order to make the
statements therein, in light of the circumstances in which they are made, not
misleading and (5) of receipt by the Company or any representative or attorney
of the Company of any other communication from the securities or other
governmental authority (including, without limitation, the Commission) of any
jurisdiction relating to any of the Registration Statement, any Preliminary
Prospectus or the Prospectus. If at any time any securities or other
governmental authority (including, without limitation, the Commission) of any
jurisdiction shall issue any order suspending the effectiveness of the
Registration Statement, the Company will make every reasonable effort to obtain
the withdrawal of such order at the earliest possible moment. If the Company has
omitted any information from the Registration Statement, pursuant to Rule 430A,
it will use its best efforts to comply with the provisions of and make all
requisite filings with the Commission pursuant to said Rule 430A and to notify
the Placement Agent promptly of all such filings.

                (c) If, at any time when a Prospectus relating to the Shares is
required to be delivered under the Act, any event occurs as a result of which
the Prospectus, as then amended or supplemented, would, in the judgment of
counsel to the Company or counsel to the

                                       10
<PAGE>
 
Placement Agent, include any untrue statement of a material fact or omit to
state a material fact necessary in order to make the statements therein, in the
light of the circumstances under which they were made, not misleading, or the
Registration Statement, as then amended or supplemented, would, in the judgment
of counsel to the Company or counsel to the Placement Agent, include any untrue
statement of a material fact or omit to state a material fact necessary to make
the statements therein not misleading, or if for any other reason it is
necessary, in the judgment of counsel to the Company or counsel to the Placement
Agent, at any time to amend or supplement the Prospectus or the Registration
Statement to comply with the Act or the Rules and Regulations, the Company will
promptly notify the Placement Agent and, subject to Section 4(a) hereof, will
promptly prepare and file with the Commission, at the Company's expense, an
amendment to the Registration Statement or an amendment or supplement to the
Prospectus that corrects such statement or omission or effects such compliance
and will deliver to the Placement Agent, without charge, such number of copies
thereof as the Placement Agent may reasonably request. The Company consents to
the use of the Prospectus or any amendment or supplement thereto by the
Placement Agent.

                (d) The Company will furnish to the Placement Agent and its
counsel, without charge, (i) one signed copy of the registration statement
described in Section 3(a) hereof and each pre-effective amendment thereto,
including financial statements and schedules, and all exhibits thereto and (ii)
so long as a prospectus relating to the Shares is required to be delivered under
the Act, as many copies of each Preliminary Prospectus or the Prospectus or any
amendment or supplement thereto as the Placement Agent may reasonably request.

                (e) The Company will comply with all the undertakings contained
in the Registration Statement.

                (f) Prior to the sale of the Shares to the Investors, the
Company will cooperate with the Placement Agent and its counsel in connection
with the registration or qualification of the Shares for offer and sale under
the state securities or Blue Sky laws of such jurisdictions as the Placement
Agent may request; provided, that in no event shall the Company be obligated to
qualify to do business in any jurisdiction where it is not now so qualified or
to take any action which would subject it to general service of process in any
jurisdiction where it is not now so subject.

                (g) The Company will make generally available to holders of its
securities, as soon as may be practicable, but in no event later than the last
day of the fifteenth full calendar month following the calendar quarter in which
the Effective Date falls, a consolidated earnings statement (which need not be
audited but shall be in reasonable detail) for a period of 12 months ended
commencing after the Effective Date, and satisfying the provisions of Section
11(a) of the Act (including Rule 158 of the Rules and Regulations).

                (h) The Company will not at any time, directly or indirectly,
take any action intended, or which might reasonably be expected, to cause or
result in, or which will 

                                       11
<PAGE>
 
constitute, stabilization of the price of the Shares to facilitate the sale or
resale of any of the Shares.

                (i) The Company will apply the net proceeds from the offering
and sale of the Shares in the manner set forth in the Prospectus under the
caption "Use of Proceeds."

          5.  Expenses. Whether or not the transactions contemplated by this 
              -------- 
Agreement are consummated or this Agreement is terminated, the Company will pay
all costs and expenses incident to the performance of the obligations of the
Company under this Agreement, including but not limited to costs and expenses of
or relating to (1) the preparation, printing and filing of the Registration
Statement (including each pre- and post-effective amendment thereto) and
exhibits thereto, each Preliminary Prospectus, the Prospectus and any amendment
or supplement to the Prospectus, including all fees, disbursements and other
charges of counsel to the Company, (2) the preparation and delivery of
certificates representing the Shares, (3) furnishing (including costs of
shipping and mailing) such copies of the Registration Statement (including all
pre- and post-effective amendments thereto), the Prospectus and any Preliminary
Prospectus, and all amendments and supplements to the Prospectus, as may be
requested for use in connection with the direct placement of the Shares, (4) the
listing of the Common Stock on the NMS, (5) any filings required to be made by
the Placement Agent with the NASD, and the fees, disbursements and other charges
of counsel for the Placement Agent in connection therewith, (6) the registration
or qualification of the Shares for offer and sale under the securities or Blue
Sky laws of such jurisdictions designated pursuant to Section 4(f), including
the reasonable fees, disbursements and other charges of counsel to the Placement
Agent in connection therewith and the preparation and printing of preliminary,
supplemental and final Blue Sky memoranda, (7) fees, disbursements and other
charges of counsel to the Company and (8) the fees of the Escrow Agent. The
Company shall reimburse the Placement Agent, on a fully accountable basis, for
all travel, legal and other out-of-pocket expenses incurred in connection with
the engagement hereunder, up to a maximum of $[150,000].

          6.  Conditions of the Obligations of the Placement Agent.  The 
              ----------------------------------------------------       
obligations of the Placement Agent hereunder are subject to the following
conditions:

                (a) Notification that the Registration Statement has become
effective shall be received by the Placement Agent not later than 5:00 p.m., New
York City time, on the date of this Agreement or at such later date and time as
shall be consented to in writing by the Placement Agent and all filings required
by Rule 424 of the Rules and Regulations and Rule 430A shall have been made.

                (b) (i) No stop order suspending the effectiveness of the
Registration Statement shall have been issued, and no proceedings for that
purpose shall be pending or threatened by any securities or other governmental
authority (including, without limitation, the Commission), (ii) no order
suspending the effectiveness of the Registration Statement or the qualification
or registration of the Shares under the securities or Blue Sky laws of any
jurisdiction shall be in effect and no proceeding for such purpose shall be
pending before or 

                                       12
<PAGE>
 
threatened or contemplated by any securities or other governmental authority
(including, without limitation, the Commission), (iii) any request for
additional information on the part of the staff of any securities or other
governmental authority (including, without limitation, the Commission) shall
have been complied with to the satisfaction of the staff of the Commission or
such authorities and (iv) after the date hereof no amendment or supplement to
the Registration Statement or the Prospectus shall have been filed unless a copy
thereof was first submitted to the Placement Agent and the Placement Agent did
not object thereto in good faith, and the Placement Agent shall have received
certificates of the Company, dated the Closing Date and signed by the President
and Chief Executive Officer or the Chairman of the Board of Directors of the
Company, and the Chief Financial Officer of the Company, to the effect of
clauses (i), (ii) and (iii).

                (c) Since the respective dates as of which information is given
in the Registration Statement and the Prospectus, (i) there shall not have been
a material adverse change in the general affairs, business, business prospects,
properties, management, condition (financial or otherwise) or results of
operations of the Company, whether or not arising from transactions in the
ordinary course of business, in each case other than as set forth in or
contemplated by the Registration Statement and the Prospectus and (ii) the
Company shall not have sustained any material loss or interference with its
business or properties from fire, explosion, flood or other casualty, whether or
not covered by insurance, or from any labor dispute or any court or legislative
or other governmental action, order or decree, which is not set forth in the
Registration Statement and the Prospectus, if in the judgment of the Placement
Agent any such development makes it impracticable or inadvisable to consummate
the sale and delivery of the Shares to Investors at the public offering price.

                (d) Since the respective dates as of which information is given
in the Registration Statement and the Prospectus, there shall have been no
litigation or other proceeding instituted against the Company or any of its
officers or directors in their capacities as such, before or by any Federal,
state or local court, commission, regulatory body, administrative agency or
other governmental body, domestic or foreign, which litigation or proceeding is
reasonably expected by management to materially and adversely affect the
business, properties, business prospects, condition (financial or otherwise) or
results of operations of the Company.

                (e) Each of the representations and warranties of the Company
contained herein shall be true and correct in all material respects at the
Closing Date, as if made on such date, and all covenants and agreements herein
contained to be performed on the part of the Company and all conditions herein
contained to be fulfilled or complied with by the Company at or prior to the
Closing Date shall have been duly performed, fulfilled or complied with in all
material respects.

                (f) The Placement Agent shall have received an opinion, dated
the Closing Date (or such other date as may be set forth in a representation or
warranty), of Rothgerber Johnson & Lyons LLP, as counsel to the Company, in form
and substance reasonably satisfactory to the Placement Agent.

                                       13
<PAGE>
 
                (g) Concurrently with the execution and delivery of this
Agreement, or, if the Company elects to rely on Rule 430A, on the date of the
Prospectus, the Accountants shall have furnished to the Placement Agent a
letter, dated the date of its delivery (the "Original Letter"), addressed to the
Placement Agent and in form and substance satisfactory to the Placement Agent,
confirming that (i) they are independent public accountants with respect to the
Company within the meaning of the Act and the Rules and Regulations; (ii) in
their opinion, the financial statements and any supplementary financial
information included in the Registration Statement and examined by them comply
as to form in all material respects with the applicable accounting requirements
of the Act and the Rules and Regulations; (iii) on the basis of procedures, not
constituting an examination in accordance with generally accepted auditing
standards, set forth in detail in the Original Letter, a reading of the latest
available interim financial statements of the Company, inspections of the minute
books of the Company since the latest audited financial statements included in
the Prospectus, inquiries of officials of the Company responsible for financial
and accounting matters and such other inquiries and procedures as may be
specified in the Original Letter to a date not more than five days prior to the
date of the Original Letter, nothing came to their attention that caused them to
believe that: (A) as of a specified date not more than five days prior to the
date of the Original Letter, there have been any changes in the capital stock of
the Company or any increase in the long-term debt of the Company, or any
decreases in net current assets or net assets or other items specified by the
Placement Agent, or any increases in any items specified by the Placement Agent,
in each case as compared with amounts shown in the latest balance sheet included
in the Prospectus, except in each case for changes, increases or decreases which
the Prospectus discloses have occurred or may occur or which are described in
the Original Letter; and (B) for the period from the date of the latest
financial statements included in the Prospectus to the specified date referred
to in Clause (A), there were any decreases in revenues or the total or per share
amounts of net income or other items specified by the Placement Agent, or any
increases in any items specified by the Placement Agent, in each case as
compared with the comparable period of the preceding year and with any other
period of corresponding length specified by the Placement Agent, except in each
case for decreases or increases which the Prospectus discloses have occurred or
may occur or which are described in the Original Letter; and (iv) in addition to
the examination referred to in their reports included in the Prospectus and the
procedures referred to in clause (iii) above, they have carried out certain
specified procedures, not constituting an examination in accordance with
generally accepted auditing standards, with respect to certain amounts,
percentages and financial information specified by the Placement Agent, which
are derived from the general accounting, financial or other records of the
Company, as the case may be, which appear in the Prospectus or in Part II of, or
in exhibits or schedules to, the Registration Statement, and have compared such
amounts, percentages and financial information with such accounting, financial
and other records and have found them to be in agreement. At the Closing Date,
the Accountants shall have furnished to the Placement Agent a letter, dated the
date of its delivery, which shall confirm, on the basis of a review in
accordance with the procedures set forth in the Original Letter, that nothing
has come to their attention during the period from the date of the Original
Letter referred to in the prior sentence to a date (specified in the letter) not
more than five days prior to the Closing Date which would

                                       14
<PAGE>
 
require any change in the Original Letter if it were required to be dated and
delivered at the Closing Date.

                (h)   The Placement Agent shall have received an opinion, dated
the Closing Date, of Lyon & Lyon LLP, patent counsel for the Company, in form
and substance satisfactory to the Placement Agent as to certain intellectual
property matters referenced in the Registration Statement.

                (i)   At the Closing Date, there shall be furnished to the
Placement Agent a certificate, dated the date of its delivery, signed by each of
the Chief Executive Officer and the Chief Financial Officer of the Company, in
form and substance satisfactory to the Placement Agent to the effect that to
each of such person's knowledge:

                (i)   Each signer of such certificate has carefully examined the
     Registration Statement and the Prospectus and (A) as of the date of such
     certificate, (x) the Registration Statement does not contain any untrue
     statement of a material fact or omit to state a material fact required to
     be stated therein or necessary in order to make the statements therein not
     misleading and (y) the Prospectus does not contain any untrue statement of
     a material fact or omit to state a material fact required to be stated
     therein or necessary in order to make the statements therein, in light of
     the circumstances under which they were made, not misleading and (B) since
     the Effective Date no event has occurred as a result of which it is
     necessary to amend or supplement the Prospectus in order to make the
     statements therein not untrue or misleading in any material respect.

                (ii)  Each of the representations and warranties of the Company
     contained in this Agreement were, when originally made, and are, at the
     time such certificate is delivered, true and correct in all material
     respects.

                (iii) Each of the covenants required herein to be performed by
     the Company on or prior to the date of such certificate has been duly,
     timely and fully performed and each condition herein required to be
     complied with by the Company on or prior to the delivery of such
     certificate has been duly, timely and fully complied with.

                (iv)  No stop order suspending the effectiveness of the
     Registration Statement or of any part thereof has been issued and no
     proceedings for that purpose have been instituted or are contemplated by
     the Commission.

                (v)   Subsequent to the date of the most recent financial
     statements in the Prospectus, there has been no material adverse change in
     the financial position or results of operations of the Company, except as
     set forth in or contemplated by the Prospectus.


                (j)   The Shares shall be qualified for sale in such states as
the Placement Agent may reasonably request, each such qualification shall be in
effect and not subject to any stop order or other proceeding on the Closing
Date; provided that in no event

                                      15
<PAGE>
 
shall the Company be obligated to qualify to do business in any jurisdiction
where it is not now so qualified or to take any action which would subject it to
taxation or general service of process in any jurisdiction where it is not now
so subject.

                (k) The Company shall have furnished to the Placement Agent such
certificates, in addition to those specifically mentioned herein, as the
Placement Agent may have reasonably requested as to the accuracy and
completeness at the Closing Date of any statement in the Registration Statement
or the Prospectus, as to the accuracy at the Closing Date of the representations
and warranties of the Company as to the performance by the Company of its
obligations hereunder, or as to the fulfillment of the conditions concurrent and
precedent to the obligations hereunder of the Placement Agent.

                (l) The Placement Agent shall have received the letters referred
to in Section 3 hereof substantially in the form of Attachments A and B.

          7.  Indemnification.
              --------------- 

                (a) The Company shall indemnify and hold harmless the Placement
Agent, the directors, officers, employees and agents of the Placement Agent and
each person, if any, who controls the Placement Agent within the meaning of
Section 15 of the Act or Section 20 of the Securities Exchange Act of 1934, as
amended (the "Exchange Act"), from and against any and all losses, claims,
liabilities, expenses and damages, joint or several, (including any and all
investigative, legal and other expenses reasonably incurred in connection with,
and any amount paid in settlement of, any action, suit or proceeding or any
claim asserted), to which it, or any of them, may become subject under the Act
or other Federal or state statutory law or regulation, at common law or
otherwise, insofar as such losses, claims, liabilities, expenses or damages
arise out of or are based on (i) any untrue statement or alleged untrue
statement made by the Company in Section 3 of this Agreement, (ii) any untrue
statement or alleged untrue statement of any material fact contained in (A) any
Preliminary Prospectus, the Registration Statement or the Prospectus or any
amendment or supplement to the Registration Statement or the Prospectus and (B)
any application or other document, or any amendment or supplement thereto,
executed by the Company based upon written information furnished by or on behalf
of the Company filed in any jurisdiction in order to qualify the Shares under
the securities or Blue Sky laws thereof or filed with the Commission or any
securities association or securities exchange (each, an "Application") or (iii)
the omission or alleged omission to state in any Preliminary Prospectus, the
Registration Statement or the Prospectus or any supplement to the Registration
Statement or the Prospectus or any Application a material fact required to be
stated therein or necessary to make the statements therein, in light of the
circumstances in which they were made, not misleading; provided, however, that
                                                       --------  -------
the Company will not be liable to the extent that such loss, claim, liability,
expense or damage arises from the sale of the Shares in the public offering to
any person and is based solely on an untrue statement or omission or alleged
untrue statement or omission made in reliance on and in conformity with
information relating to the Placement Agent furnished in writing to the Company
by the Placement Agent expressly for inclusion in the Registration Statement,
any Preliminary Prospectus or the Prospectus; and provided further, that such
indemnity with respect to any Preliminary 

                                       16
<PAGE>
 
Prospectus shall not inure to the benefit of any Placement Agent (or any person
controlling such Placement Agent) from whom the person asserting any such loss,
claim, damage, liability or action purchased Shares which are the subject
thereof to the extent that any such loss, claim, damage or liability (i) results
from the fact that such Placement Agent failed to send or give a copy of the
Prospectus (as amended or supplemented) to such person at or prior to the
confirmation of the sale of such Shares to such person in any case where such
delivery is required by the Act and (ii) arises out of or is based upon an
untrue statement or omission of a material fact contained in such Preliminary
Prospectus that was corrected in the Prospectus (or any amendment or supplement
thereto), unless such failure to deliver the Prospectus (as amended or
supplemented) was the result of noncompliance by the Company with Section 5(d).
This indemnity agreement will be in addition to any liability which the Company
may otherwise have. The Company will not, without the prior written consent of
the Placement Agent (which will not be unreasonably withheld), settle or
compromise or consent to the entry of any judgment in any pending or threatened
claim, action, suit or proceeding in respect of which indemnification may be
sought hereunder (whether or not such Placement Agent or any person who controls
such Placement Agent within the meaning of Section 15 of the Act or Section 20
of the Exchange Act is a party to each claim, action, suit or proceeding),
unless such settlement, compromise or consent includes an unconditional release
of the Placement Agent and each such controlling person from all liability
arising out of such claim, action, suit or proceeding.

                (b) The Placement Agent will indemnify and hold harmless the
Company, each person, if any, who controls the Company within the meaning of
Section 15 of the Act or Section 20 of the Exchange Act, each director of the
Company and each officer of the Company who signs the Registration Statement to
the same extent as the foregoing indemnity from the Company to the Placement
Agent, but only insofar as losses, claims, liabilities, expenses or damages
arise out of or are based on any untrue statement or omission or alleged untrue
statement or omission made in reliance on and in conformity with information
relating to the Placement Agent furnished in writing to the Company by the
Placement Agent expressly for use in the Registration Statement, any Preliminary
Prospectus or the Prospectus. This indemnity agreement will be in addition to
any liability that the Placement Agent might otherwise have. The Company
acknowledges that, for all purposes under this Agreement, the statements set
forth under the heading "Plan of Distribution" in any Preliminary Prospectus and
the Prospectus constitute the only information relating to the Placement Agent
furnished in writing to the Company by the Placement Agent expressly for
inclusion in the Registration Statement, any Preliminary Prospectus or the
Prospectus.

                (c) Any party that proposes to assert the right to be
indemnified under this Section 7 will, promptly after receipt of notice of
commencement of any action against such party in respect of which a claim is to
be made against an indemnifying party or parties under this Section 7, notify
each such indemnifying party of the commencement of such action, enclosing a
copy of all papers served, but the omission so to notify such indemnifying party
will not relieve it from any liability that it may have to any indemnified party
under the foregoing provisions of this Section 7 unless, and only to the extent
that, such omission results in the forfeiture of substantive rights or defenses
by the indemnifying party. If any such action 

                                       17
<PAGE>
 
is brought against any indemnified party and it notifies the indemnifying party
of its commencement, the indemnifying party will be entitled to participate in
and, to the extent that it elects by delivering written notice to the
indemnified party promptly after receiving notice of the commencement of the
action from the indemnified party, jointly with any other indemnifying party
similarly notified, to assume the defense of the action, with counsel reasonably
satisfactory to the indemnified party, and after notice from the indemnifying
party to the indemnified party of its election to assume the defense, the
indemnifying party will not be liable to the indemnified party for any legal or
other expenses except as provided below and except for the reasonable costs of
investigation subsequently incurred by the indemnified party in connection with
the defense. The indemnified party will have the right to employ its own counsel
in any such action, but the fees, expenses and other charges of such counsel
will be at the expense of such indemnified party unless (1) the employment of
counsel by the indemnified party has been authorized in writing by the
indemnifying party, (2) the indemnified party has reasonably concluded (based on
advice of counsel) that a conflict exists (based on advice of counsel to the
indemnified party) between the indemnified party and the indemnifying party that
would prevent the counsel selected by the indemnifying party from representing
the indemnified party (in which case the indemnifying party will not have the
right to direct the defense of such action on behalf of the indemnified party)
or (3) the indemnifying party has not in fact employed counsel to assume the
defense of such action within a reasonable time after receiving notice of the
commencement of the action, in each of which cases the reasonable fees,
disbursements and other charges of counsel will be at the expense of the
indemnifying party or parties. It is understood that the indemnifying party or
parties shall not, in connection with any proceeding or related proceedings in
the same jurisdiction, be liable for the reasonable fees, disbursements and
other charges of more than one separate firm admitted to practice in such
jurisdiction at any one time for all such indemnified party or parties. All such
fees, disbursements and other charges will be reimbursed by the indemnifying
party promptly as they are incurred. The Company will not, without the prior
written consent of the Placement Agent (which consent will not be unreasonably
withheld), settle or compromise or consent to the entry of any judgment in any
pending or threatened claim, action, suit or proceeding in respect of which
indemnification has been sought hereunder (whether or not the Placement Agent or
any person who controls the Placement Agent within the meaning of Section 15 of
the Act or Section 20 of the Exchange Act is a party to such claim, action, suit
or proceeding), unless such settlement, compromise or consent includes an
unconditional release of the Placement Agent and each such controlling person
from all liability arising out of such claim, action, suit or proceeding. An
indemnifying party will not be liable for any settlement of any action or claim
effected without its written consent (which consent will not be unreasonably
withheld).

                (d) In order to provide for just and equitable contribution in
circumstances in which the indemnification provided for in the foregoing
paragraphs of this Section 7 is applicable in accordance with its terms but for
any reason is held to be unavailable from the Company or the Placement Agent,
the Company and the Placement Agent will contribute to the total losses, claims,
liabilities, expenses and damages (including any investigative, legal and other
expenses reasonably incurred in connection with, and any amount paid in
settlement of, any action, suit or proceeding or any claim asserted, but after
deducting any contribution received by the Company from persons other than the
Placement Agent such 

                                       18
<PAGE>
 
as persons who control the Company within the meaning of the Act or the Exchange
Act, officers of the Company who signed the Registration Statement and directors
of the Company, who also may be liable for contribution) to which the Company
and the Placement Agent may be subject in such proportion as shall be
appropriate to reflect the relative benefits received by the Company on the one
hand and the Placement Agent on the other. The relative benefits received by the
Company on the one hand and the Placement Agent on the other shall be deemed to
be in the same proportion as the total net proceeds from the offering (before
deducting Company expenses) received by the Company as set forth in the table on
the cover page of the Prospectus bear to the fee received by the Placement Agent
hereunder. If, but only if, the allocation provided by the foregoing sentence is
not permitted by applicable law, the allocation of contribution shall be made in
such proportion as is appropriate to reflect not only the relative benefits
referred to in the foregoing sentence but also the relative fault of the
Company, on the one hand, and the Placement Agent on the other, with respect to
the statements or omissions which resulted in such loss, claim, liability,
expense or damage, or action in respect thereof, as well as any other relevant
equitable considerations with respect to such offering. Such relative fault
shall be determined by reference to whether the untrue or alleged untrue
statement of a material fact or omission or alleged omission to state a material
fact relates to information supplied by the Company or the Placement Agent, the
intent of the parties and their relative knowledge, access to information and
opportunity to correct or prevent such statement or omission. The Company and
the Placement Agent agree that it would not be just and equitable if
contributions pursuant to this Section 7(d) were to be determined by pro rata
allocation or by any other method of allocation which does not take into account
the equitable considerations referred to herein. The amount paid or payable by
an indemnified party as a result of the loss, claim, liability, expense or
damage, or action in respect thereof, referred to above in this Section 7(d)
shall be deemed to include, for purpose of this Section 7(d), any legal or other
expenses reasonably incurred by such indemnified party in connection with
investigating or defending any such action or claim. Notwithstanding the
provisions of this Section 7(d), the Placement Agent shall not be required to
contribute any amount in excess of the fee received by it, and no person found
guilty of fraudulent misrepresentation (within the meaning of Section 11(f) of
the Act) will be entitled to contribution from any person who was not guilty of
such fraudulent misrepresentation. For purposes of this Section 7(d), any person
who controls a party to this Agreement within the meaning of the Act or the
Exchange Act will have the same rights to contribution as that party, and each
officer of the Company who signed the Registration Statement will have the same
rights to contribution as the Company, subject in each case to the provisions
hereof. Any party entitled to contribution, promptly after receipt of notice of
commencement of any action against such party in respect of which a claim for
contribution may be made under this Section 7(d), will notify any such party or
parties from whom contribution may be sought, but the omission so to notify will
not relieve the party or parties from whom contribution may be sought from any
other obligation it or they may have under this Section 7(d). No party will be
liable for contribution with respect to any action or claim settled without its
written consent (which consent will not be unreasonably withheld).

          8.  Termination.
              ----------- 

                                       19
<PAGE>
 
                (a) The obligations of the Placement Agent under this Agreement
may be terminated at any time prior to the Closing Date, by notice to the
Company from the Placement Agent, without liability on the part of the Placement
Agent to the Company if, prior to delivery and payment for the Shares, in the
sole judgment of the Placement Agent (i) trading in the Common Stock of the
Company shall have been suspended by the Commission or by the NNM, (ii) trading
in securities generally on the NNM shall have been suspended or limited or
minimum or maximum prices shall have been generally established on any of such
exchanges, or additional material governmental restrictions, not in force on the
date of this Agreement, shall have been imposed upon trading in securities
generally by any of such exchanges or by order of the Commission or any court or
other governmental authority, (iii) a general banking moratorium shall have been
declared by Federal or New York State authorities, or (iv) any material adverse
change in the financial or securities markets in the United States or any
outbreak or material escalation of hostilities or declaration by the United
States of a national emergency or war or other calamity or crisis shall have
occurred, the effect of any of which is such as to make it, in the sole judgment
of the Placement Agent, impracticable or inadvisable to market the Shares on the
terms and in the manner contemplated by the Prospectus.

                (b) The obligations of the parties under this Agreement shall be
automatically terminated in the event that notice is given to the Escrow Agent
as determination prior to the close of business on the date scheduled for
receipt of the Requisite Funds, that the Requisite Funds have not been deposited
by the Investors into the Escrow Account by the close of business on the Closing
Date.

                (c) If this Agreement shall be terminated pursuant to any of the
provisions hereof (otherwise than pursuant to Section 8(b), or if the sale of
the Shares provided for herein is not consummated because any condition to the
obligations of the Placement Agent set forth herein is not satisfied or because
of any refusal, inability or failure on the part of the Company to perform any
agreement herein or comply with any provision hereof, the Company will, subject
to demand by you, reimburse you for all out-of-pocket expenses incurred in
connection herewith.

                                       20
<PAGE>
 
          9.   Right of First Refusal.
               ---------------------- 

                (a) For a period of 18 months from the date hereof, the Company
grants the Placement Agent the right (provided the financing contemplated in
this agreement is completed) to provide investment banking services to the
Company on an exclusive basis in all matters for which investment banking
services are sought by the Company (such right, the "Right of First Refusal").
For these purposes, investment banking services shall include, without
limitation, (i) acting as lead manager for any underwritten public offering;
(ii) acting as exclusive placement agent or financial advisor in connection with
any private offering of securities of the Company; and (iii) acting as financial
advisor in connection with any sale or other transfer by the Company, directly
or indirectly, of a majority or controlling portion of its capital stock or
assets to another entity, any purchase or other transfer by another entity,
directly or indirectly, of a majority or controlling portion of the capital
stock or assets of the Company, and any merger or consolidation of the Company
with another entity. The Placement Agent shall notify the Company of its
intention to exercise the Right of First Refusal within 15 business days
following notice in writing by the Company. Any decision by the Placement Agent
to act in any such capacity shall be contained in separate agreements, which
agreements would contain, among other matters, provisions for customary fees for
transactions of similar size and nature, as may be mutually agreed upon, and
indemnification of the Placement Agent and its affiliates and shall be subject
to general market conditions. If the Placement Agent declines to exercise the
Right of First Refusal, the Company shall have the right to retain any other
person or persons to provide such services on terms and conditions which are not
materially more favorable to such other person or persons than the terms
declined by the Placement Agent.

                (b) If within [18] months after the termination of the Placement
Agent's engagement hereunder, shares of Common Stock are sold by the Company
through a placement to investors previously identified and/or contacted by the
Placement Agent in its capacity as placement agent hereunder, then the Company
shall pay the Placement Agent, at the time of each such sale, an amount equal to
the Placement Fee with respect to the gross proceeds to the Company from each
such sale.

          10.  Notices.  Notice given pursuant to any of the provisions of this
               -------                                                         
Agreement shall be in writing and, unless otherwise specified, shall be mailed
or delivered (a) if to the Company, at the office of the Company, 2950
Wilderness Place, Boulder, CO  80301, Attention:  Larry Bullock or (b) if to the
Placement Agent, at the office of Hambrecht & Quist LLC, One Bush Street, San
Francisco, CO  94104, Attention:  Shelly D. Guyer.  Any such notice shall be
effective only upon receipt.  Any notice under Section 7 may be made by
facsimile or telephone, but if so made shall be subsequently confirmed in
writing.

          11.  Survival.  The respective representations, warranties, 
               -------- 
agreements, covenants, indemnities and other statements of the Company and the
Placement Agent set forth in this Agreement or made by or on behalf of them,
respectively, pursuant to this Agreement shall remain in full force and effect,
regardless of (i) any investigation made by or on behalf of the Company, any of
its officers or directors, the Placement Agent or any controlling person

                                       21
<PAGE>
 
referred to in Section 7 hereof and (ii) delivery of and payment for the Shares.
The respective agreements, covenants, indemnities and other statements set forth
in Sections 5 and 7 hereof shall remain in full force and effect, regardless of
any termination or cancellation of this Agreement.

          12.  Successors.  This Agreement shall inure to the benefit of and 
               ---------- 
shall be binding upon the Placement Agent, the Company and their respective
successors and legal representatives, and nothing expressed or mentioned in this
Agreement is intended or shall be construed to give any other person any legal
or equitable right, remedy or claim under or in respect of this Agreement, or
any provisions herein contained, this Agreement and all conditions and
provisions hereof being intended to be and being for the sole and exclusive
benefit of such persons and for the benefit of no other person except that (i)
the indemnification and contribution contained in Sections 7(a) and (d) of this
Agreement shall also be for the benefit of the directors, officers, employees
and agents of the Placement Agent and any person or persons who control the
Placement Agent within the meaning of Section 15 of the Act or Section 20 of the
Exchange Act and (ii) the indemnification and contribution contained in Sections
7(b) and (d) of this Agreement shall also be for the benefit of the directors of
the Company, the officers of the Company who have signed the Registration
Statement and any person or persons who control the Company within the meaning
of Section 15 of the Act or Section 20 of the Exchange Act. No Investor shall be
deemed a successor because of such purchase.

          13.  Applicable Law.  The validity and interpretations of this 
               --------------   
Agreement, and the terms and conditions set forth herein, shall be governed by
and construed in accordance with the laws of the State of New York, without
giving effect to any provisions relating to conflicts of laws.

          14.  Counterparts.  This Agreement may be executed in two or more
               ------------                                                
counterparts, each of which shall be deemed an original, but all of which
together shall constitute one and the same instrument.

          15.  Entire Agreement.  This Agreement constitutes the entire 
               ----------------                                    
understanding between the parties hereto as to the matters covered hereby and
supersedes all prior understandings, written or oral, relating to such subject
matter.

                                       22
<PAGE>
 
                Please confirm that the foregoing correctly sets forth the
agreement between the Company and the Placement Agent.

                                          Very truly yours,
        
                                          RIBOZYME PHARMACEUTICALS, INC.



                                          By: _________________________________
                                              Name:
                                              Title:
 
 
 


Confirmed as of the date first
above mentioned:

HAMBRECHT & QUIST LLC



  By: _________________________________
      Name:
      Title:

                                       23
<PAGE>
 
                                   EXHIBIT A

                               ESCROW AGREEMENT

<PAGE>
 
                                   EXHIBIT B

                                LOCK UP LETTERS

 

<PAGE>
 
                                 ATTACHMENT A



Hambrecht & Quist LLC
One Bush Street
San Francisco, CA  94104



Ladies and Gentlemen:

        Reference is made to a Placement Agency Agreement (the "Placement Agency
Agreement"), which will be executed between Ribozyme Pharmaceuticals, Inc., a
Delaware corporation (the "Company"), and Hambrecht & Quist LLC (the "Placement
Agent").

        In consideration of the Placement Agency Agreement, the undersigned
hereby agrees not to, without the prior written consent of the Placement Agent,
offer to sell, sell, contract to sell, grant any option to purchase or otherwise
dispose of any shares, directly or indirectly, of the Company's Common Stock,
par value $.01 per share (the "Common Stock"), owned by the undersigned for a
period of 90 days after the date of the Placement Agency Agreement.
Notwithstanding the foregoing, the undersigned may transfer any or all of the
shares of Common Stock owned by him, either during his lifetime or on death, by
gift, will or intestate succession to his immediate family or to a trust the
beneficiaries of which are exclusively the undersigned and/or a member or
members of his immediate family; provided however that any such successor shall
agree to be bound by the provisions hereof.

        It is understood that, if the Company notifies you that it does not
intend to proceed with the issuance and sale of Shares (as defined in the
Placement Agency Agreement) pursuant to the Placement Agency Agreement, if the
Placement Agency Agreement does not become effective, or if the Placement Agency
Agreement (other than the provisions thereof which survive termination) shall
terminate or be terminated prior to payment for and delivery of the Shares, the
undersigned will be released from his obligations under this letter agreement.



Dated:  April    , 1999



                                                  Very truly yours,


                                                  --------------------------

<PAGE>
 
                                 ATTACHMENT B





Hambrecht & Quist LLC
One Bush Street
San Francisco, CA  94104



Ladies and Gentlemen:

 
        Reference is made to a Placement Agency Agreement (the "Placement Agency
Agreement"), which will be executed between Ribozyme Pharmaceuticals, Inc., a
Delaware corporation (the "Company"), and Hambrecht & Quist LLC (the "Placement
Agent").

        In consideration of the Placement Agency Agreement, the undersigned
hereby agrees not to, without the prior written consent of the Placement Agent,
offer, sell or otherwise dispose of any shares , directly or indirectly, of the
Company's Common Stock, par value $.01 per share (the "Common Stock"), owned by
the undersigned for a period of 90 days after the date of the Placement Agency
Agreement except with respect to the issuance of shares of Common Stock upon the
exercise of stock options and warrants outstanding as of the date hereof and the
issuance of Common Stock or stock options under any benefit plan of the Company.

        It is understood that, if the Company notifies you that it does not
intend to proceed with the issuance and sale of Shares (as defined in the
Placement Agency Agreement) pursuant to the Placement Agency Agreement, if the
Placement Agency Agreement does not become effective, or if the Placement Agency
Agreement (other than the provisions thereof which survive termination) shall
terminate or be terminated prior to payment for and delivery of the Shares, the
undersigned will be released from his obligations under this letter agreement.


Dated:  April    , 1999


                                                  Very truly yours,

                                                  RIBOZYME PHARMACEUTICALS,
                                                  INC.


                                                  -----------------------------
                                                  Name:
                                                  Title:


<PAGE>
 
                                                                    EXHIBIT 1.2
 
                           FORM OF ESCROW AGREEMENT
 
  ESCROW AGREEMENT, dated as of April  , 1999, by and among Ribozyme
Pharmaceuticals, Inc., a Delaware corporation (the "Company"), Hambrecht &
Quist LLC (the "Placement Agent") and Citibank N.A., a national banking
institution incorporated under the laws of the United States of America (the
"Escrow Agent").
 
  WHEREAS, the Company proposes to sell an aggregate of 1,800,000 shares of
its common stock, par value $0.01 per share (the "Shares"), for an aggregate
of $   , all as described in the Company's registration statement on Form S-1
(Registration No. 333-   ) (which, together with all amendments or supplements
thereto is referred to herein as the "Registration Statement");
 
  WHEREAS, the Shares are being offered by the Company to investors whom the
Placement Agent has introduced to the Company, pursuant to registration under
the Securities Act of 1933, as amended, and pursuant to registration or
exemptions from registration under state securities laws;
 
  WHEREAS, the offering of the Shares will terminate on April  , 1999 (the
"Closing Date"), and, if subscriptions for the total number of Shares being
offered pursuant to the Registration Statement have not been received by the
Company on or before the Closing Date, no Shares will be sold and all payments
made by subscribers will be refunded by the Escrow Agent with interest earned
thereon, if any; and
 
  WHEREAS, with respect to all subscription payments received from
subscribers, the Company proposes to establish an escrow account with the
Escrow Agent at the office of its Escrow Administration, 120 Wall Street, New
York, New York 10043, Attention:                  .
 
  NOW THEREFORE, it is agreed as follows:
 
    1. Establishment of Escrow. The Escrow Agent hereby agrees to receive and
  disburse the proceeds from the offering of the Shares and any interest
  earned thereon in accordance herewith.
 
    2. Deposit of Escrowed Property. The Placement Agent, on behalf of the
  subscribers for the Shares, shall from time to time, but in no event later
  than 12:00 noon on the date following the date of receipt by the Placement
  Agent, cause to be wired to or deposited with, or, cause the subscribers
  for the Shares to wire or deposit with, the Escrow Agent funds or checks of
  the subscribers delivered in payment for Shares (the "Escrowed Property").
  Any checks delivered to the Escrow Agent pursuant to the terms hereof shall
  be made payable to or endorsed to the order of the Escrow Agent. The Escrow
  Agent upon receipt of such checks shall present such checks for payment to
  the drawee-bank under such checks. Any checks not honored by the drawee-
  bank thereunder after the first presentment for payment shall be returned
  to the Placement Agent, on behalf of such subscriber, in the same manner
  notices are delivered pursuant to Section 6. Upon receipt of funds or
  checks from the Placement Agent, the Escrow Agent shall credit such funds
  and the amount of such checks to a non-interest-bearing account (the
  "Escrow Account") held by the Escrow Agent. If following the credit of the
  amount of any check to the Escrow Account such check is dishonored, the
  Escrow Agent, if such dishonored check amount shall have been invested
  pursuant to Section 3, shall liquidate to the extent of such dishonored
  check amount such investments and debit the Escrow Account for the amount
  of such dishonored check plus, if any, the amount of interest and other
  income earned with respect to any investment of such dishonored check
  amount.
 
    3. Investment of Escrowed Property. The Escrow Agent on the second
  business day ("business day" defined for purposes of this Escrow Agreement
  as any day which is not a Saturday, a Sunday or a day on which banks or
  trust companies in the City and State of New York are authorized or
  obligated by law, regulation or executive order to remain closed)
  succeeding (unless such deposit is made in
<PAGE>
 
  federal or other immediately available or "same day" funds, in which case,
  on the business day next succeeding) the credit of any subscription
  proceeds to the Escrow Account pursuant to Section 2 and until release of
  such proceeds in accordance with the terms hereof, shall deposit such
  proceeds in a Citibank Money Market Deposit Account, pursuant to Rule 15c2-
  4 promulgated by the Securities and Exchange Commission under the
  Securities Exchange Act of 1934, as amended, in accordance with the terms
  set forth on Exhibit A hereto (made a part of this Escrow Agreement as if
  herein set forth). The Escrow Agent shall in no event be liable for any
  loss resulting from any change in interest rates applicable to proceeds
  invested pursuant to this Section. Interest on proceeds invested pursuant
  to this section shall accrue from the date of investment of such proceeds
  until the termination of such investment pursuant to the terms hereof and
  shall be paid as set forth in Section 5.
 
    4. List of Subscribers. The Placement Agent shall furnish or cause to be
  furnished to the Escrow Agent, at the time of each deposit of funds or
  checks pursuant to Section 2, a list, substantially in the form of Exhibit
  B hereto, containing the name of, the address of, the number of Shares
  subscribed for by, the subscription amount delivered to the Escrow Agent on
  behalf of, and the social security or taxpayer identification number, if
  applicable, of each subscriber whose funds are being deposited, and to
  which is attached a completed W-9 form (or, in the case of any subscriber
  who is not a United States citizen or resident, a W-8 form) for each listed
  subscriber. The Escrow Agent shall notify the Placement Agent and the
  Company of any discrepancy between the subscription amounts set forth on
  any list delivered pursuant to this Section 4 and the subscription amounts
  received by the Escrow Agent. The Escrow Agent is authorized to revise such
  list to reflect the actual subscription amounts received and the release of
  any subscription amounts pursuant to Section 5.
 
    5. Withdrawal of Subscription Amounts.
 
    (a) If the Escrow Agent shall receive a notice, substantially in the form
  of Exhibit C hereto (an "Offering Termination Notice"), from the Company,
  the Escrow Agent shall (i) promptly after receipt of such Offering
  Termination Notice and the clearance of all checks received by the Escrow
  Agent as Escrowed Property, liquidate any investments that shall have been
  made pursuant to Section 3 and send to each subscriber listed on the list
  held by the Escrow Agent pursuant to Section 4 whose total subscription
  amount shall not have been released pursuant to paragraph (b) or (c) of
  this Section 5, in the manner set forth in paragraph (e) of this Section 5,
  a check to the order of such subscriber in the amount of the remaining
  subscription amount held by the Escrow Agent as set forth on such list held
  by the Escrow Agent, and (ii) promptly after the fourth business day of the
  month immediately following the month in which the investments made
  pursuant to Section 3 were terminated pursuant to this paragraph, send, in
  the manner set forth in paragraph (e) of this Section 5, a check to the
  order of each such subscriber in the amount of interest and other income
  earned and not yet paid with respect to any investment of such subscriber's
  funds. The Escrow Agent shall notify the Company and the Placement Agent of
  the distribution of such funds to the subscribers.
 
    (b) In the event that (i) the Shares have been subscribed for and funds
  in respect thereof shall have been deposited with the Escrow Agent on or
  before the Closing Date and (ii) no Offering Termination Notice shall have
  been delivered to the Escrow Agent, the Company and the Placement Agent,
  shall deliver to the Escrow Agent a joint notice, substantially in the form
  of Exhibit D hereto (a "Closing Notice"), designating the date on which
  Shares are to be sold and delivered to the subscribers thereof as the
  "Closing Date", which date shall not be earlier than the clearance of any
  checks received by the Escrow Agent as Escrowed Property, the proceeds of
  which are to be distributed on such Closing Date, and identifying the
  subscribers and the number of Shares to be sold to each thereof on such
  Closing Date. Such Closing Notice, unless the parties otherwise agree,
  shall be delivered not less than two (2) nor more than five (5) business
  days prior to such Closing Date. The Escrow Agent, after receipt of such
  Closing Notice and the clearance of such checks:
 
      (i) on or prior to the Closing Date identified in such Closing
    Notice, shall liquidate any investments that shall have been made
    pursuant to Section 3 to the extent of the subscription amount to be
    distributed pursuant to the immediately succeeding clause (ii);
 
 
                                       2
<PAGE>
 
      (ii) on such Closing Date, pay to the Company and the Placement
    Agent, in federal or other immediately available funds and otherwise in
    the manner and amount specified by the Company and the Placement Agent
    in such Closing Notice, an amount equal to the aggregate of the
    subscription amounts paid by the subscribers identified in such Closing
    Notice for the Shares to be sold on such Closing Date as set forth on
    the list held by the Escrow Agent pursuant to Section 4; and
 
      (iii) promptly after the fourth business day of the month immediately
    following the month in which the investments made pursuant to Section 3
    were terminated pursuant to such Closing Notice, shall send, in the
    manner set forth in paragraph (e) of this Section 5, a check to the
    order of each subscriber identified in such Closing Notice in the
    amount of interest and other income earned and not yet paid with
    respect to any investment of each such subscriber's funds distributed
    on such Closing Date. At the time of such transfer, the Escrow Agent
    shall identify in writing to the Company and the Placement Agent the
    amount of the interest earned for the account of each subscriber and
    the date such subscription was received.
 
    (c) If at any time and from time to time prior to the release of any
  subscriber's total subscription amount pursuant to paragraph (a) or (b) of
  this Section 5 from escrow, the Company shall deliver to the Escrow Agent a
  notice, substantially in the form of Exhibit E hereto (a "Subscription
  Termination Notice"), to the effect that any or all of the subscriptions of
  such subscriber have been rejected by the Company (a "Rejected
  Subscription"), the Escrow Agent (i) promptly after receipt of such
  Subscription Termination Notice and, if such subscriber delivered a check
  in payment of its Rejected Subscription, after the clearance of such check,
  shall liquidate, to the extent of the sum of such subscriber's Rejected
  Subscription amount as set forth in the Subscription Termination Notice,
  any investments that shall have been made pursuant to Section 3 and send to
  such subscriber, in the manner set forth in paragraph (e) of this Section
  5, a check to the order of such subscriber in the amount of such Rejected
  Subscription amount, and (ii) promptly after the fourth business day of the
  month immediately following the month in which the investments made
  pursuant to Section 3 were terminated pursuant to this paragraph, shall
  send to such subscriber, in the manner set forth in paragraph (e) of this
  Section 5, a check to the order of such subscriber in the amount of
  interest and other income earned and not yet paid with respect to any
  investment of such subscriber's Rejected Subscription amount. At the time
  of such transfer, the Escrow Agent shall identify in writing to the Company
  and the Placement Agent the amount of the interest earned for the account
  of each subscriber and the date such subscription was received.
 
    (d) On a date following the transfer of any interest earned for the
  account of each subscriber pursuant to Section 5(a), (b) or (c), but not
  later than December 31, 1999, the Escrow Agent shall provide each
  subscriber with tax form 1099 setting forth the amount of such interest.
 
    (e) For the purposes of this Section 5, any check that the Escrow Agent
  shall be required to send to any subscriber shall be sent to such
  subscriber by first class mail, postage prepaid, at such subscriber's
  address furnished to the Escrow Agent pursuant to Section 4.
 
    6. Notices. Any notice or other communication required or permitted to be
  given hereunder shall be in writing and shall be (a) delivered by hand or
  (b) sent by mail, registered or certified, with proper postage prepaid, and
  addressed as follows:
 
    if to the Company, to:
 
           Ribozyme Pharmaceuticals, Inc.
           2950 Wilderness Place
           Boulder, Colorado 80301
           Attention: Larry E. Bullock
           Facsimile: (303) 449-6995
 
                                       3
<PAGE>
 
    with a copy to:
 
      Rothgerber Johnson & Lyons LLP
      1200 17th Street, Suite 3000
      Denver, Colorado 80202-5839
      Attention: Herbert H. Davis III
      Facsimile: (303) 623-9560
 
    if to the Placement Agent, to:
 
      Hambrecht & Quist LLC
      One Bush Street
      San Francisco, California 94104
      Attention: Shelly D. Guyer
      Facsimile: (415) 439-3479
 
    with a copy to:
 
      Stroock & Stroock & Lavan LLP
      180 Maiden Lane
      New York, New York 10038-4982
      Attention: Anna T. Pinedo, Esq.
      Facsimile: (212) 806-6006
 
    if to the Escrow Agent, to:
 
      Citibank, N.A.
      120 Wall Street
      New York, New York 10043
      Attention: Facsimile: (212)
 
or to such other address as the person to whom notice is to be given may have
previously furnished to the others in the above-referenced manner. All such
notices and communications, if mailed, shall be effective when deposited in the
mails, except that notices and communications to the Escrow Agent and notices
of changes of address shall not be effective until received.
 
  7. Concerning the Escrow Agent. To induce the Escrow Agent to act hereunder,
it is further agreed by the Company and Placement Agent that:
 
    (a) The Escrow Agent shall not be under any duty to give the Escrowed
  Property held by it hereunder any greater degree of care than it gives its
  own similar property and shall not be required to invest any funds held
  hereunder except as directed in this Escrow Agreement. Uninvested funds
  held hereunder shall not earn or accrue interest.
 
    (b) This Escrow Agreement expressly sets forth all the duties of the
  Escrow Agent with respect to any and all matters pertinent hereto. No
  implied duties or obligations shall be read into this Escrow Agreement
  against the Escrow Agent. The Escrow Agent shall not be bound by the
  provisions of any agreement among the other parties hereto except this
  Escrow Agreement.
 
    (c) The Escrow Agent shall not be liable, except for its own gross
  negligence or willful misconduct, and, except with respect to claims based
  upon such gross negligence or willful misconduct that are successfully
  asserted against the Escrow Agent, and the other parties hereto shall
  jointly and severally indemnify and hold harmless the Escrow Agent (and any
  successor Escrow Agent) from and against any and all losses, liabilities,
  claims, actions, damages and expenses, including reasonable attorneys' fees
  and disbursements, arising out of and in connection with this Escrow
  Agreement. Without limiting the foregoing, the Escrow Agent shall in no
  event be liable in connection with its investment or reinvestment of any
  cash held by it hereunder in good faith, in accordance with the terms
  hereof, including without limitation any liability for any delays (not
  resulting from gross negligence or willful misconduct) in the investment or
  reinvestment of the Escrowed Property, or any loss of interest incident to
  any such delays.
 
                                       4
<PAGE>
 
    (d) The Escrow Agent shall be entitled to rely upon any order, judgment,
  certification, demand, notice, instrument or other writing delivered to it
  hereunder without being required to determine the authenticity or the
  correctness of any fact stated therein or the propriety or validity of the
  service thereof. The Escrow Agent may act in reliance upon any instrument
  or signature believed by it in good faith to be genuine and may assume, if
  in good faith, that any person purporting to give notice or receipt or
  advice or make any statement or execute any document in connection with the
  provisions hereof has been duly authorized to do so.
 
    (e) The Escrow Agent may act pursuant to the advice of counsel with
  respect to any matter relating to this Escrow Agreement and shall not be
  liable for any action taken or omitted in good faith and in accordance with
  such advice.
 
    (f) The Escrow Agent does not have any interest in the Escrowed Property
  deposited hereunder but is serving as escrow holder only. Any payments of
  income from the Escrow Account shall be subject to withholding regulations
  then in force with respect to United States taxes. The parties hereto will
  provide the Escrow Agent with appropriate W-9 forms for tax I.D., number
  certification, or non-resident alien certifications.
 
    This paragraph (f) and paragraph (c) of this Section 7 shall survive
  notwithstanding any termination of this Escrow Agreement or the resignation
  of the Escrow Agent.
 
    (g) The Escrow Agent makes no representation as to the validity, value,
  genuineness or the collectibility of any security or other document or
  instrument held by or delivered to it.
 
    (h) The Escrow Agent shall not be called upon to advise any party as to
  the wisdom of selling or retaining or taking or refraining from any action
  with respect to any securities or other property deposited hereunder.
 
    (i) The Escrow Agent (and any successor escrow agent) at any time may be
  discharged from its duties and obligations hereunder by the delivery to it
  of notice of termination signed by both the Company and the Placement Agent
  or at any time may resign by giving written notice to such effect to the
  Company and the Placement Agent. Upon any such termination or resignation,
  the Escrow Agent shall deliver the Escrowed Property to any successor
  escrow agent jointly designated by the other parties hereto in writing, or
  to any court of competent jurisdiction if no such successor escrow agent is
  agreed upon, whereupon the Escrow Agent shall be discharged of and from any
  and all further obligations arising in connection with this Escrow
  Agreement. The termination or resignation of the Escrow Agent shall take
  effect on the earlier of (i) the appointment of a successor (including a
  court of competent jurisdiction) or (ii) the day that is 30 days after the
  date of delivery: (A) to the Escrow Agent of the other parties' notice of
  termination or (B) to the other parties hereto of the Escrow Agent's
  written notice of resignation. If at that time the Escrow Agent has not
  received a designation of a successor escrow agent, the Escrow Agent's sole
  responsibility after that time shall be to keep the Escrowed Property safe
  until receipt of a designation of successor escrow agent or a joint written
  disposition instruction by the other parties hereto or any enforceable
  order of a court of competent jurisdiction.
 
    (j) The Escrow Agent shall have no responsibility for the contents of any
  writing of any third party contemplated herein as a means to resolve
  disputes and may rely without any liability upon the contents thereof.
 
    (k) In the event of any disagreement among or between the other parties
  hereto and/or the subscribers of the Shares resulting in adverse claims or
  demands being made in connection with the Escrowed Property, or in the
  event that the Escrow Agent in good faith is in doubt as to what action it
  should take hereunder, the Escrow Agent shall be entitled to retain the
  Escrowed Property until the Escrow Agent shall have received (i) a final
  and non-appealable order of a court of competent jurisdiction directing
  delivery of the Escrowed Property or (ii) a written agreement executed by
  the
 
                                       5
<PAGE>
 
  other parties hereto and consented to by the subscribers directing delivery
  of the Escrowed Property, in which event the Escrow Agent shall disburse
  the Escrowed Property in accordance with such order or agreement. Any court
  order referred to in (i) above shall be accompanied by a legal opinion by
  counsel for the presenting party satisfactory to the Escrow Agent to the
  effect that said court order is final and non-appealable. The Escrow Agent
  shall act on such court order and legal opinion without further question.
 
    (l) As consideration for its agreement to act as Escrow Agent as herein
  described, the Company agrees to pay the Escrow Agent fees determined in
  accordance with the terms set forth on Exhibit F hereto (made a part of
  this Escrow Agreement as if herein set forth). In addition, the Company
  agrees to reimburse the Escrow Agent for all reasonable expenses,
  disbursements and advances incurred or made by the Escrow Agent in
  performance of its duties hereunder (including reasonable fees, expenses
  and disbursements of its counsel).
 
    (m) The other parties hereto irrevocably (i) submit to the jurisdiction
  of any New York State or federal court sitting in New York City in any
  action or proceeding arising out of or relating to this Escrow Agreement,
  (ii) agree that all claims with respect to such action or proceeding shall
  be heard and determined in such New York State or federal court and (iii)
  waive, to the fullest extent possible, the defense of an inconvenient
  forum. The other parties hereby consent to and grant any such court
  jurisdiction over the persons of such parties and over the subject matter
  of any such dispute and agree that delivery or mailing of process or other
  papers in connection with any such action or proceeding in the manner
  provided hereinabove, or in such other manner as may be permitted by law,
  shall be valid and sufficient service thereof.
 
    (n) No printed or other matter in any language (including, without
  limitation, the Registration Statement, notices, reports and promotional
  material) which mentions the Escrow Agent's name or the rights, powers, or
  duties of the Escrow Agent shall be issued by the other parties hereto or
  on such parties' behalf unless the Escrow Agent shall first have given its
  specific written consent thereto. The Escrow Agent hereby consents to the
  use of its name and the reference to the escrow arrangement in the
  Registration Statement.
 
  8. Miscellaneous.
 
  (a) This Escrow Agreement shall be binding upon and inure solely to the
benefit of the parties hereto and their respective successors and assigns,
heirs, administrators and representatives, and the subscribers of the Shares
and shall not be enforceable by or inure to the benefit of any other third
party except as provided in paragraph (i) of Section 7 with respect to the
termination of, or resignation by, the Escrow Agent. No party may assign any of
its rights or obligations under this Escrow Agreement without the written
consent of the other parties.
 
  (b) This Escrow Agreement shall be construed in accordance with and governed
by the internal law of the State of New York (without reference to its rules as
to conflicts of law).
 
  (c) This Escrow Agreement may only be modified by a writing signed by all of
the parties hereto and consented to by the subscribers of the Shares adversely
affected by such modifications. No waiver hereunder shall be effective unless
in a writing signed by the party to be charged.
 
  (d) This Escrow Agreement shall terminate upon the payment pursuant to
Section 5 of all amounts held in the Escrow Account.
 
  (e) The section headings herein are for convenience only and shall not affect
the construction thereof. Unless otherwise indicated, references to Sections
are to Sections contained herein.
 
  (f) This Escrow Agreement may be executed in one or more counterparts but all
such separate counterparts shall constitute but one and the same instrument;
provided that, although executed in
 
                                       6
<PAGE>
 
counterparts, the executed signature pages of each such counterpart may be
affixed to a single copy of this Agreement which shall constitute an original.
 
  IN WITNESS WHEREOF, the parties hereto have caused this Escrow Agreement to
be executed as of the day and year first above written.
 
                                          Ribozyme Pharmaceuticals, Inc.
 
 
                                          By: _________________________________
 
 
                                              Name: ___________________________
 
 
                                              Title: __________________________
 
                                          Hambrecht & Quist Llc
 
 
                                          By: _________________________________
 
 
                                              Name: ___________________________
 
 
                                              Title: __________________________
 
                                          Citibank, N.A.
 
 
                                          By: _________________________________
 
 
                                              Name: ___________________________
 
 
                                              Title: __________________________
 
                                       7
<PAGE>
 
                                                                       EXHIBIT A
 
                 Citibank Insured Money Market Deposit Accounts
 
  Deposits/Withdrawals may be made to the Citibank Money Market Deposit Account
("MMDA") established under the Escrow Agreement to which this Exhibit is
attached only through the Escrow Account. All transaction and balance reporting
of the MMDA will be included as part of the Escrow Account Statement. Activity
in the MMDA will be reflected as the equivalent of dollars on deposit in a
Citibank Money Market Deposit Account. Deposits/Withdrawals to the MMDA will be
made only as permitted by the Escrow Agreement to which this Exhibit is
attached. The MMDA has certain regulatory restrictions as well as some minimum
requirements:
 
  1. By regulation, Citibank, N.A. is required to reserve the right to require
seven days' prior notice of any withdrawals of funds from an account; provided,
however, that, if Citibank, N.A. elects to exercise its right to require seven
days' prior notice, it shall exercise such right as to all such accounts
established.
 
  2. A daily balance of $10,000 must be maintained on deposit in the MMDA. If
the MMDA should fall below $10,000 on any day, Citibank, N.A. will be
authorized to transfer the remaining balance to the Escrow Account.
 
  3. Rates will be determined by Citibank, N.A. and can be determined by
calling your custody account officer.
 
  4. Balances up to $100,000 (total on deposit at Citibank, N.A.) are FDIC-
insured.
 
                                       8
<PAGE>
 
                                                                       EXHIBIT B
 
                            SUMMARY OF CASH RECEIVED
                            NEW PARTICIPANT DEPOSIT
 
                                                                   Date:
Deposit Date:                                               List Number:
Investment Date:                                              Page    of
Batch Number:                                               Approved By:
                                                                   JOB#:
 
For Bank use only
 
TITLE:
 
<TABLE>
<CAPTION>
                                                     Tax ID No./                     For Bank
     Name       Deposit Number of Shares Address Social Security No.                 Use Only
     ----       ------- ---------------- ------- -------------------           --------------------
<S>             <C>     <C>              <C>     <C>                 <C>       <C>
                                                                               Tax Code Exempt (Y/N)
                                                                               W-9 (yr) NRA
                                                                               W-8 (yr)
                                                                               1008 (87)
Broker   Misc.                                        Misc. II       Misc. III Tax Code Exempt (Y/N)
                                                                               W-2 (yr) NRS
                                                                               W-8 (yr)
                                                                               1008 (87)
Broker   Misc.                                        Misc. II       Misc. III Tax Code Exempt (Y/N)
                                                                               W-2 (yr) NRS
                                                                               W-8 (yr)
                                                                               1008 (87)
Broker   Misc.                                        Misc. II       Misc. III Tax Code Exempt (Y/N)
                                                                               W-2 (yr) NRA
                                                                               W-8 (yr)
                                                                               1000 (87)
Broker   Misc.                                        Misc. II       Misc. III
</TABLE>
 
                                       9
<PAGE>
 
                                                                      EXHIBIT C
 
                     [Form of Offering Termination Notice]
 
                                                                  April  , 1999
 
Citibank, N.A.
Corporate Trust
Escrow Administration
120 Wall Street, 13th Floor
New York, New York 10043
 
Attention:
 
Dear               :
 
  Pursuant to Section 5(a) of the Escrow Agreement dated as of April  , 1999
(the "Escrow Agreement"), among Ribozyme Pharmaceuticals, Inc., (the
"Company"), Hambrecht & Quist LLC and you, the Company hereby notifies you of
the termination of the offering of the Shares (as that term is defined in the
Escrow Agreement) and directs you to make payments to subscribers as provided
for in Section 5(a) of the Escrow Agreement.
 
                                          Very truly yours,
 
                                          Ribozyme Pharmaceuticals, Inc.
 
 
                                          By: _________________________________
 
 
                                          Name: _______________________________
 
 
                                          Title: ______________________________
 
                                      10
<PAGE>
 
                                                                      EXHIBIT D
 
                           [Form of Closing Notice]
 
                                                                  April  , 1999
 
Citibank, N.A.
Corporate Trust
Escrow Administration
120 Wall Street, 13th Floor
New York, New York 10043
 
Attention:
 
Ladies and Gentlemen:
 
  Pursuant to Section 5(b) of the Escrow Agreement dated as of April   , 1999
(the "Escrow Agreement"), among Ribozyme Pharmaceuticals, Inc. (the
"Company"), Hambrecht & Quist LLC and you, the Company hereby certifies that
it has received subscriptions for the Shares (as that term is defined in the
Escrow Agreement) and the Company will sell and deliver Shares to the
subscribers thereof at a closing to be held on April   , 1999 (the "Closing
Date"). The names of the subscribers concerned, the number of Shares
subscribed for by each of such subscribers and the related subscription
amounts are set forth on Schedule I annexed hereto.
 
  Please accept these instructions as standing instructions for the closing to
be held on the Closing Date. The parties hereto certify that they do not wish
to have a call back regarding these instructions.
 
  We hereby request that the aggregate subscription amount be paid to the
Placement Agent and us as follows:
 
  1. To the Company, $    ;
 
  2. To Hambrecht & Quist LLC, $    ; and
 
  3. To the Escrow Agent, $    .
 
  These instructions may be executed in any number of counterparts, each of
which shall be deemed to be an original, and all of which together shall
constitute one and the same instrument.
 
                                          Very truly yours,
 
                                          Ribozyme Pharmaceuticals, Inc.
 
 
                                          By: _________________________________
 
 
                                          Name: _______________________________
 
 
                                          Title: ______________________________
 
                                          Hambrecht & Quist LLC
 
 
                                          By: _________________________________
 
 
                                          Name: _______________________________
 
 
                                          Title: ______________________________
 
                                      11
<PAGE>
 
                                   SCHEDULE I
 
<TABLE>
<CAPTION>
 Name of                          Number of                                             Subscription
Subscriber                         Shares                                                  Amount
- ----------                        ---------                                             ------------
<S>                               <C>                                                   <C>
 
</TABLE>
 
                                       12
<PAGE>
 
                                                                      EXHIBIT E
 
                   [Form of Subscription Termination Notice]
 
                                                                  April  , 1999
 
Citibank, N.A.
Corporate Trust
Escrow Administration
120 Wall Street, 13th Floor
New York, New York 10043
 
Attention:
 
Dear _____________:
 
  Pursuant to Section 5(c) of the Escrow Agreement dated as of April  , 1997
(the "Escrow Agreement"), among Ribozyme Pharmaceuticals, Inc. (the
"Company"), Hambrecht & Quist LLC and you, the Company hereby notifies you
that the following subscription(s) have been rejected:
 
<TABLE>
<CAPTION>
                                 Amount of                                               Dollar
                                 Subscribed                                            Amount of
 Name of                           Shares                                               Rejected
Subscriber                        Rejected                                            Subscription
- ----------                       ----------                                           ------------
<S>                              <C>                                                  <C>
 
</TABLE>
                                          Very truly yours,
 
                                          Ribozyme Pharmaceuticals, Inc.
 
 
                                          By: _________________________________
                                              Name:
                                              Title:
 
                                      13
<PAGE>
 
                                                                       EXHIBIT F
 
Fee to Citibank N.A.: $________________
 
                                       14

<PAGE>
 
                                                                    EXHIBIT 5.1
 
Ribozyme Pharmaceuticals, Inc.
Attn: Board of Directors
2950 Wilderness Place
Boulder, Colorado 80301
 
Dear Sirs:
 
  You have requested our opinion in connection with the Registration Statement
on Form S-1 ("Registration Statement") which is expected to be filed by
Ribozyme Pharmaceuticals, Inc. on March 26, 1999, with respect to the offer and
sale of 1,800,000 shares of a single class of common stock. We have reviewed
such corporate documents and have made such investigation of Colorado law as
we have deemed necessary. Based upon that review and investigation, it is our
opinion that when the shares referred to above are issued in the manner
described in the Registration Statement, said shares will be authorized, fully
paid and non-assessable.
 
  We consent to the use in the Registration Statement of our name and the
statement with respect to our firm under the heading "Legal Matters" in the
related prospectus.
 
                                          Sincerely yours,
 
                                          ROTHGERBER JOHNSON & LYONS, LLP
 
                                          /s/ Rothgerber Johnson & Lyons, LLP
 
March 25, 1999

<PAGE>
 
                                                                    EXHIBIT 23.1
 
                        CONSENT OF INDEPENDENT AUDITORS
 
  We consent to the reference to our firm under the captions "Selected
Financial Data" and "Experts" and to the use of our report dated February 16,
1999, in the Registration Statement on Form S-1 and related prospectus of
Ribozyme Pharmaceuticals, Inc. for the registration of 1,800,000 shares of its
common stock.
 
/s/ ERNST & YOUNG LLP
 
Denver, Colorado
March 25, 1999


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