ARRIS PHARMACEUTICAL CORP/DE/
SC 13D/A, 1997-12-08
PHARMACEUTICAL PREPARATIONS
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<PAGE>
 
                      SECURITIES AND EXCHANGE COMMISSION
                             WASHINGTON, DC  20549

                             --------------------

                                  SCHEDULE 13D
                                 (RULE 13d-101)

        INFORMATION TO BE INCLUDED IN STATEMENTS FILED PURSUANT TO 13D-
             1(A) AND AMENDMENTS THERETO FILED PURSUANT TO 13D-2(A)

                              (AMENDMENT NO. 1)/1/

                                        

                        ARRIS PHARMACEUTICAL CORPORATION
                        --------------------------------
                                (Name of Issuer)

                                  Common Stock
                                  ------------
                         (Title of Class of Securities)

                                  04269 W 107
                                  -----------
                                 (CUSIP Number)

                                   Hope Flack
                               BVF Partners L.P.
                       333 West Wacker Drive, Suite 1600
                            Chicago, Illinois  60606
                                 (312) 263-7777
                 --------------------------------------------
                (Name, Address and Telephone Number of Person
               Authorized to Receive Notices and Communications)

                               December 4, 1997
                               ----------------
            (Date of Event which Requires Filing of this Statement)


     If the filing person has previously filed a statement on Schedule 13G to
report the acquisition which is the subject of this Schedule 13D, and is filing
this schedule because of Rule 13d-1(b)(3) or (4), check the following box [_].

     Note: Six copies of this statement, including all exhibits, should be filed
with the Commission.  See Rule 13d-1(a) for other parties to whom copies are to
be sent.

                         (Continued on following pages)

                             (Page 1 of 10 Pages)

- --------------------

/1/  The remainder of this cover page shall be filled out for a reporting
person's initial filing on this form with respect to the subject class of
securities, and for any subsequent amendment containing information which would
alter disclosures provided in a prior cover page.

    The information required on the remainder of this cover page shall not be
deemed to be "filed" for the purpose of Section 18 of the Securities Exchange
Act of 1934 or otherwise subject to the liabilities of that section of the Act
but shall be subject to all other provisions of the Act (however, see the
Notes).
<PAGE>
 
- -----------------------                                  ---------------------
  CUSIP NO. 04269 W 107         SCHEDULE 13D               PAGE 2 OF 10 PAGES
- -----------------------                                  ---------------------
 
- ------------------------------------------------------------------------------
      NAME OF REPORTING PERSON
 1    S.S. OR I.R.S. IDENTIFICATION NO. OF ABOVE PERSON
      
      Biotechnology Value Fund, L.P.

- ------------------------------------------------------------------------------
      CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP*
 2                                                              (a) [X]
                                                                (b) [_]

- ------------------------------------------------------------------------------
      SEC USE ONLY
 3
 
       
- ------------------------------------------------------------------------------
      SOURCE OF FUNDS*
 4    
      WC
- ------------------------------------------------------------------------------
      CHECK BOX IF DISCLOSURE OF LEGAL PROCEEDINGS IS REQUIRED PURSUANT TO
 5    ITEMS 2(d) or 2(e)                                                   [_]
 
      
- ------------------------------------------------------------------------------
      CITIZENSHIP OR PLACE OF ORGANIZATION
 6    
      Delaware

- ------------------------------------------------------------------------------
                          SOLE VOTING POWER
                     7   
     NUMBER OF            0
 
      SHARES       -----------------------------------------------------------
                          SHARED VOTING POWER
   BENEFICIALLY      8
                          398,621
     OWNED BY
                   -----------------------------------------------------------
       EACH               SOLE DISPOSITIVE POWER
                     9    
    REPORTING             0
 
      PERSON       -----------------------------------------------------------
                          SHARED DISPOSITIVE POWER
       WITH         10
                          398,621
- ------------------------------------------------------------------------------
      AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON
11  
      398,621

- ------------------------------------------------------------------------------
      CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (11) EXCLUDES CERTAIN SHARES*
12                  
                                                                        [_]
 
- ------------------------------------------------------------------------------
      PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (11)
13    
      2.6%

- ------------------------------------------------------------------------------
      TYPE OF REPORTING PERSON*
14
      PN

- ------------------------------------------------------------------------------
                     *SEE INSTRUCTIONS BEFORE FILLING OUT!
<PAGE>
 
- -----------------------                                  ---------------------
  CUSIP NO. 04269 W 107         SCHEDULE 13D               PAGE 3 OF 10 PAGES
- -----------------------                                  ---------------------
 
- ------------------------------------------------------------------------------
      NAME OF REPORTING PERSON
 1    S.S. OR I.R.S. IDENTIFICATION NO. OF ABOVE PERSON
      
      BVF Partners, L.P.

- ------------------------------------------------------------------------------
      CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP*
 2                                                              (a) [X]
                                                                (b) [_]

- ------------------------------------------------------------------------------
      SEC USE ONLY
 3
 
       
- ------------------------------------------------------------------------------
      SOURCE OF FUNDS*
 4    
      OO
- ------------------------------------------------------------------------------
      CHECK BOX IF DISCLOSURE OF LEGAL PROCEEDINGS IS REQUIRED PURSUANT TO
 5    ITEMS 2(d) or 2(e)                                                   [_]
 
      
- ------------------------------------------------------------------------------
      CITIZENSHIP OR PLACE OF ORGANIZATION
 6    
      Delaware

- ------------------------------------------------------------------------------
                          SOLE VOTING POWER
                     7   
     NUMBER OF            0
 
      SHARES       -----------------------------------------------------------
                          SHARED VOTING POWER
   BENEFICIALLY      8
                          750,367
     OWNED BY
                   -----------------------------------------------------------
       EACH               SOLE DISPOSITIVE POWER
                     9    
    REPORTING             0
 
      PERSON       -----------------------------------------------------------
                          SHARED DISPOSITIVE POWER
       WITH         10
                          750,367
- ------------------------------------------------------------------------------
      AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON
11  
      750,367

- ------------------------------------------------------------------------------
      CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (11) EXCLUDES CERTAIN SHARES*
12                  
                                                                        [_]
 
- ------------------------------------------------------------------------------
      PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (11)
13    
      5.0%

- ------------------------------------------------------------------------------
      TYPE OF REPORTING PERSON*
14
      PN

- ------------------------------------------------------------------------------
                     *SEE INSTRUCTIONS BEFORE FILLING OUT!
<PAGE>
 
- -----------------------                                  ---------------------
  CUSIP NO. 04269 W 107         SCHEDULE 13D               PAGE 4 OF 10 PAGES
- -----------------------                                  ---------------------
 
- ------------------------------------------------------------------------------
      NAME OF REPORTING PERSON
 1    S.S. OR I.R.S. IDENTIFICATION NO. OF ABOVE PERSON
      
      BVF Inc.

- ------------------------------------------------------------------------------
      CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP*
 2                                                              (a) [X]
                                                                (b) [_]

- ------------------------------------------------------------------------------
      SEC USE ONLY
 3
 
       
- ------------------------------------------------------------------------------
      SOURCE OF FUNDS*
 4    
      WC, OO
- ------------------------------------------------------------------------------
      CHECK BOX IF DISCLOSURE OF LEGAL PROCEEDINGS IS REQUIRED PURSUANT TO
 5    ITEMS 2(d) or 2(e)                                                   [_]
 
      
- ------------------------------------------------------------------------------
      CITIZENSHIP OR PLACE OF ORGANIZATION
 6    
      Delaware

- ------------------------------------------------------------------------------
                          SOLE VOTING POWER
                     7   
     NUMBER OF            0
 
      SHARES       -----------------------------------------------------------
                          SHARED VOTING POWER
   BENEFICIALLY      8
                          750,367
     OWNED BY
                   -----------------------------------------------------------
       EACH               SOLE DISPOSITIVE POWER
                     9    
    REPORTING             0
 
      PERSON       -----------------------------------------------------------
                          SHARED DISPOSITIVE POWER
       WITH         10
                          750,367
- ------------------------------------------------------------------------------
      AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON
11  
      750,367

- ------------------------------------------------------------------------------
      CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (11) EXCLUDES CERTAIN SHARES*
12                  
                                                                        [_]
 
- ------------------------------------------------------------------------------
      PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW (11)
13    
      5.0%

- ------------------------------------------------------------------------------
      TYPE OF REPORTING PERSON*
14
      IA,CO

- ------------------------------------------------------------------------------
                     *SEE INSTRUCTIONS BEFORE FILLING OUT!
<PAGE>
 
- -----------------------                                  ---------------------
  CUSIP NO. 04269 W 107         SCHEDULE 13D               PAGE 5 OF 10 PAGES
- -----------------------                                  ---------------------

    Amendment No. 1 (the "Amendment") to the Statement on Schedule 13D, dated
October 1, 1997 (the "Statement"), filed with the Securities and Exchange
Commission on behalf of Biotechnology Value Fund, L.P., a Delaware limited
partnership ("BVF"), BVF Partners L.P., a Delaware limited partnership
("Partners"), and BVF Inc., a Delaware corporation ("BVF Inc." and, together
with BVF and Partners, the "Reporting Persons") with respect to the Common
Stock, par value $0.001 per share (the "Stock"), of Arris Pharmaceutical
Corporation, a Delaware corporation ("Arris").

Item 3 is hereby amended to read in its entirety as follows:

ITEM 3.   SOURCE AND AMOUNT OF FUNDS OR OTHER CONSIDERATION.

     Since October 23, 1997, Partners, in its capacity as general partner of
BVF, has purchased on behalf of such limited partnership an aggregate number of
42,800 shares of the Stock for an aggregate consideration of $446,383.24,
utilizing funds provided by BVF from its working capital pursuant to the terms
of its limited partnership agreement with Partners and has sold 138,700 shares
of the Stock for an aggregate consideration of $1,494,544.39.  In addition,
Partners, in its capacity as investment manager with respect to certain managed
accounts, has purchased on behalf of such managed accounts an aggregate number
of 39,500 shares of the Stock for an aggregate consideration of $421,028.67,
utilizing funds under management by Partners pursuant to investment management
agreements between Partners and such managed accounts and has sold 117,000
shares of Stock for an aggregate consideration of $1,264,730.44.

Item 5 is hereby amended to read in its entirety as follows:

ITEM 5.   INTEREST IN SECURITIES OF THE ISSUER.

     (a) BVF beneficially owns 398,621 shares of the Stock, Partners
beneficially owns 750,367 shares of the Stock, and BVF Inc. beneficially owns
750,367 shares of the Stock, approximately 2.6%, 5.0% and 5.0%, respectively, of
the aggregate number of shares outstanding as of October 31, 1997 (as reported
in Arris' most recent statement on Form 10-Q).

     (b) BVF shares voting and dispositive power over the 398,621 shares of the
Stock it beneficially owns with Partners.  Partners and BVF Inc. share voting
and dispositive power over the 750,367 shares of the Stock they beneficially own
with, in addition to BVF, the managed accounts on whose behalf Partners, as
investment manager, purchased such shares. The managed accounts on whose behalf
Partners owns shares of the Stock are Investment 10 L.L.C., an Illinois limited
liability company ("ILL10"), Palamundo, L.D.C., a limited duration company
organized under the laws of the Cayman Islands ("Palamundo"), ZPG Securities,
L.L.C., a New York limited liability company ("ZPG") and Biotechnology Value
Fund, Ltd., a Cayman Islands Corporation ("BVF Ltd.").  ILL10, Palamundo, ZPG
and BVF 
<PAGE>
 
- -----------------------                                  ---------------------
  CUSIP NO. 04269 W 107         SCHEDULE 13D               PAGE 6 OF 10 PAGES
- -----------------------                                  ---------------------

Ltd. are collectively referred to herein as the "Accounts." The Accounts
specialize in holding biotechnology stocks for investment purposes and the
business address of each is BVF Partners L.P., 333 West Wacker Drive, Suite
1600, Chicago, Illinois 60606.

     (c) Exhibit B attached hereto contains information as to all transactions
in the Stock by the Reporting Persons during the past sixty days.  All such
transactions were made for cash in open market, over-the-counter transactions.
No other transactions in the Stock have been effected by the Reporting Persons
during the past sixty days.

     (d) The Accounts are entitled to receive dividends and any sale proceeds
with respect to the Stock in proportion to their respective ownership interests
therein.

     (e) The Reporting Persons ceased to the beneficial owners of more than five
percent of the Common Stock of Arris on December 5, 1997.

Item 7 is hereby amended to read in its entirety as follows:

ITEM 7.   MATERIAL TO BE FILED AS EXHIBITS.

     Exhibit A - Agreement Regarding Joint Filing

     Exhibit B - Transactions in the Stock by the Reporting Persons during the
                 last 60 days.
<PAGE>
 
- -----------------------                                  ---------------------
  CUSIP NO. 04269 W 107         SCHEDULE 13D               PAGE 7 OF 10 PAGES
- -----------------------                                  ---------------------

     After reasonable inquiry and to the best of my knowledge and belief, I
certify that the information set forth in this statement is true, complete and
correct.

Dated:  December 8, 1997.

        BIOTECHNOLOGY VALUE FUND, L.P.

        By:  BVF Partners L.P., its general partner

             By:  BVF Inc., its general partner

             By: /s/ Mark N. Lampert
                 ---------------------------------
                    Mark N. Lampert
                    President

         BVF PARTNERS L.P.

         By:  BVF Inc., its general partner

              By: /s/ Mark N. Lampert
                  ---------------------------------
                     Mark N. Lampert
                     President

         BVF INC.

         By: /s/ Mark N. Lampert
            ------------------------------
              Mark N. Lampert
              President

<PAGE>
 
                                   EXHIBIT A

                        AGREEMENT REGARDING JOINT FILING
                        --------------------------------

     The undersigned, Biotechnology Value Fund, L.P., a Delaware limited
partnership, and BVF Partners L.P., a Delaware limited partnership, and BVF
Inc., a Delaware corporation, hereby agree and acknowledge that the Amendment
containing the information required by Schedule 13D, to which this Agreement is
attached as an exhibit, is filed on behalf of each of them.  The undersigned
further agree that any further amendments or supplements thereto shall also be
filed on behalf of each of them.

Dated:  December 8, 1997.

     BIOTECHNOLOGY VALUE FUND, L.P.

     By:  BVF Partners L.P., its general partner

          By:  BVF Inc., its general partner

               By:  /s/ Mark N. Lampert
                   ------------------------------
                    Mark N. Lampert
                    President

     BVF PARTNERS L.P.

     By:  BVF Inc., its general partner

          By: /s/ Mark N. Lampert
             ------------------------------
               Mark N. Lampert
               President

     BVF INC.


     By: /s/ Mark N. Lampert
        -------------------------------
          Mark N. Lampert
          President

                              Page 8 of 10 Pages

<PAGE>
 
                                   EXHIBIT B

               TRANSACTIONS IN THE STOCK BY THE REPORTING PERSONS
               --------------------------------------------------
                           DURING THE PAST SIXTY DAYS
                           --------------------------

<TABLE>
<CAPTION>
- ---------------------------------------------------------------------------------------
Settlement                   For the                Price per    
  Date           By        Account of    Quantity     Share      Type of Trade   Broker
- ---------------------------------------------------------------------------------------
<C>          <S>           <C>           <C>         <C>         <C>             <C>
  10/23/97   Partners      BVF             10,000     $12.4375   Purchase        HMQT
- ---------------------------------------------------------------------------------------
  10/23/97   Partners      BVF Ltd.        10,100     $12.4375   Purchase        HMQT
- ---------------------------------------------------------------------------------------
  10/31/97   Partners      BVF              4,000     $11.1375   Purchase        PFTC
- ---------------------------------------------------------------------------------------
  10/31/97   Partners      PAL              2,000     $11.1375   Purchase        PFTC
- ---------------------------------------------------------------------------------------
  10/31/97   Partners      BVF Ltd.         4,000     $11.1375   Purchase        PFTC
- ---------------------------------------------------------------------------------------
  11/05/97   Partners      BVF Ltd.         1,400     $11.7388   Purchase        INET
- ---------------------------------------------------------------------------------------
  11/07/97   Partners      BVF            (32,300)    $11.1186   Sale            INET
- ---------------------------------------------------------------------------------------
  11/07/97   Partners      ILL10           (8,000)    $11.1186   Sale            INET
- ---------------------------------------------------------------------------------------
  11/07/97   Partners      PAL             (4,400)    $11.1186   Sale            INET
- ---------------------------------------------------------------------------------------
  11/07/97   Partners      ZPG             (3,500)    $11.1186   Sale            INET
- ---------------------------------------------------------------------------------------
  11/07/97   Partners      BVF Ltd.       (33,000)    $11.1186   Sale            INET
- ---------------------------------------------------------------------------------------
  11/07/97   Partners      BVF            (20,000)    $11.0625   Sale            INET
- ---------------------------------------------------------------------------------------
  11/07/97   Partners      BVF            (24,000)    $11.1875   Sale            MIST
- ---------------------------------------------------------------------------------------
  11/10/97   Partners      BVF             (5,000)    $11.5387   Sale            INET
- ---------------------------------------------------------------------------------------
  11/10/97   Partners      ILL10           (3,000)    $11.5387   Sale            INET
- ---------------------------------------------------------------------------------------
  11/10/97   Partners      PAL             (3,000)    $11.5387   Sale            INET
- ---------------------------------------------------------------------------------------
  11/10/97   Partners      BVF Ltd.       (10,000)    $11.5387   Sale            INET
- ---------------------------------------------------------------------------------------
  11/11/97   Partners      BVF            (16,000)    $11.1875   Sale            PFTC
- ---------------------------------------------------------------------------------------
  11/11/97   Partners      ILL10           (5,000)    $11.1875   Sale            PFTC
- ---------------------------------------------------------------------------------------
  11/11/97   Partners      ZPG             (4,000)    $11.1875   Sale            PFTC
- ---------------------------------------------------------------------------------------
  11/11/97   Partners      BVF Ltd.        (8,000)    $11.1875   Sale            PFTC
- ---------------------------------------------------------------------------------------
  11/13/97   Partners      BVF            (10,000)    $10.6532   Sale            INET
- ---------------------------------------------------------------------------------------
  11/13/97   Partners      BVF Ltd.        (2,200)    $10.6532   Sale            INET
- ---------------------------------------------------------------------------------------
  11/14/97   Partners      BVF             (1,000)    $10.4375   Sale            INET
- ---------------------------------------------------------------------------------------
  11/14/97   Partners      ILL10           (2,000)    $10.7418   Sale            INET
- ---------------------------------------------------------------------------------------
  11/14/97   Partners      ZPG             (2,000)    $10.7418   Sale            INET
- ---------------------------------------------------------------------------------------
</TABLE> 
                              Page 9 of 10 Pages
<PAGE>
 
<TABLE> 
<CAPTION> 
- ---------------------------------------------------------------------------------------
Settlement                   For the                Price per    
  Date           By        Account of    Quantity     Share      Type of Trade   Broker
- ---------------------------------------------------------------------------------------
<C>          <S>           <C>           <C>         <C>         <C>             <C>
  11/14/97   Partners      BVF Ltd.        (5,200)    $10.7418   Sale            INET
- ---------------------------------------------------------------------------------------
  11/17/97   Partners      BVF             (5,500)    $ 9.6534   Sale            INET
- ---------------------------------------------------------------------------------------
  11/18/97   Partners      BVF             (5,000)    $ 9.5714   Sale            INET
- ---------------------------------------------------------------------------------------
  11/18/97   Partners      BVF Ltd.        (2,000)    $ 9.5714   Sale            INET
- ---------------------------------------------------------------------------------------
  11/19/97   Partners      BVF             (7,000)    $ 9.6312   Sale            INET
- ---------------------------------------------------------------------------------------
  11/19/97   Partners      BVF Ltd.        (2,600)    $ 9.6312   Sale            INET
- ---------------------------------------------------------------------------------------
  11/20/97   Partners      ILL10           (1,700)    $ 9.7500   Sale            INET
- ---------------------------------------------------------------------------------------
  11/21/97   Partners      BVF             28,800     $ 9.5998   Purchase        INET
- ---------------------------------------------------------------------------------------
  11/21/97   Partners      ILL10            2,000     $ 9.5998   Purchase        INET
- ---------------------------------------------------------------------------------------
  11/21/97   Partners      PAL              1,000     $ 9.5998   Purchase        INET
- ---------------------------------------------------------------------------------------
  11/21/97   Partners      ZPG              2,000     $ 9.5998   Purchase        INET
- ---------------------------------------------------------------------------------------
  11/21/97   Partners      BVF Ltd.        17,000     $ 9.5998   Purchase        INET
- ---------------------------------------------------------------------------------------
  12/04/97   Partners      BVF             (7,000)    $10.0415   Sale            PFTC
- ---------------------------------------------------------------------------------------
  12/04/97   Partners      BVF Ltd.        (3,400)    $10.0415   Sale            PFTC
- ---------------------------------------------------------------------------------------
  12/04/97   Partners      BVF             (1,000)    $10.0000   Sale            INET
- ---------------------------------------------------------------------------------------
  12/05/97   Partners      BVF             (4,900)    $ 9.5000   Sale            INET
- ---------------------------------------------------------------------------------------
  12/05/97   Partners      ILL10           (2,000)    $ 9.5000   Sale            INET
- ---------------------------------------------------------------------------------------
  12/05/97   Partners      PAL             (2,000)    $ 9.5000   Sale            INET
- ---------------------------------------------------------------------------------------
  12/05/97   Partners      ZPG             (2,000)    $ 9.5000   Sale            INET
- ---------------------------------------------------------------------------------------
  12/05/97   Partners      BVF Ltd.        (8,000)    $ 9.5000   Sale            INET
- ---------------------------------------------------------------------------------------
</TABLE>
 
     HMQT       =    Hambrecht, Quist
     INET       =    Instinet
     PFTC       =    Preferred Technologies
     MIST       =    Mr. Stock

                              Page 10 of 10 Pages


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