LYNX THERAPEUTICS INC
10-Q/A, 1997-05-27
MEDICINAL CHEMICALS & BOTANICAL PRODUCTS
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                                  UNITED STATES
                       SECURITIES AND EXCHANGE COMMISSION
                             WASHINGTON, D.C. 20549



                                   FORM 10-QA



     X       QUARTERLY REPORT PURSUANT TO SECTION  13 OR 15(d) OF THE SECURITIES
- ---------    EXCHANGE  ACT  OF 1934 FOR THE QUARTERLY PERIOD ENDED SEPTEMBER 30,
             1996.
                                       OR

             TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES
- ---------    EXCHANGE ACT OF 1934 FOR THE TRANSITION PERIOD FROM  __________  TO
             _____________ .

                         Commission File Number 0-22570

                             Lynx Therapeutics, Inc.
             (Exact name of registrant as specified in its charter)

            Delaware                                          94-3161073
   (State or other jurisdiction of                        (I.R.S. Employer
   incorporation or organization)                         Identification No.)

         3832 Bay Center Place
              Hayward, CA                                        94545
(Address of principal executive offices)                       (Zip Code)

                                 (510) 670-9300
              (Registrant's telephone number, including area code)

Indicate by check mark whether the registrant (1) has filed all reports required
to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during
the  preceding 12 months (or for such  shorter  period that the  Registrant  was
required  to file  such  reports),  and  (2) has  been  subject  to such  filing
requirements for the past 90 days.

                                Yes  X   No
                                    ---     ---

The  number of  shares  of Common  Stock,  Series B  Preferred  Stock,  Series C
Preferred  Stock,  and Series D Preferred Stock  outstanding as of September 30,
1996 were 2,345,466,  332,288, 123,299 and 40,000,  respectively.  The Series B,
Series C and Series D Preferred  Stock are  convertible  into Common  Stock on a
ten-for-one  basis.  Information  regarding  the  aggregate  market value of the
Registrant's  voting stock is not included  because there is currently no public
trading market for the Company's voting stock.

                                                                    Page 1 of 11
<PAGE>

PART II:  OTHER INFORMATION
- ---------------------------

Item 1.       Legal Proceedings
                  None

Item 2.       Changes in Securities
                  None

Item 3.       Defaults upon Senior Securities
                  None

Item 4.       Submission of Matters to a Vote of Security Holders
                  None

Item 5.       Other Information
                  None

Item 6.       Exhibits and Reports on Form 8-K.
              (a)     Exhibits
                      The  following  documents  are filed as  Exhibits  to this
                      report:

              Exhibit
              Number                Description
              -------               -----------

              10.32       Collaboration  Agreement  dated  as of  September  30,
                          1996, by and among the Company and Schwarz Pharma AG**

              11.0        Statement re: Computation of Earnings Per Share

              27.1        Financial Data Schedule

- ----------

**  Portions of this  agreement  have been  deleted  pursuant to our request for
    confidential treatment.

              (b)         No reports on Form 8-K were filed  during the  quarter
                          ended September 30, 1996.

Pursuant  to the  requirements  of the  Securities  Exchange  Act of  1934,  the
registrant  has duly  caused  this  report  to be  signed  on its  behalf by the
undersigned, thereunto duly authorized.

                          LYNX THERAPEUTICS, INC.

                          /s/ Sam Eletr
                          ------------------------------------------------------
                          By:       Sam Eletr, Ph.D.
                                    Chief Executive Officer
                          Date:     November 15, 1996


                          /s/ Craig C. Taylor
                          ------------------------------------------------------
                          By:       Craig C. Taylor
                                    Acting Chief Financial Officer
                                    (Principal Financial and Accounting Officer)
                          Date:     November 15, 1996


                                                                   Page 11 of 11


<PAGE>

                  (d)  No  Violation.  Neither  Schwarz  Pharma  nor  any of its
Affiliates  is a party to,  subject to, or bound by an  agreement  or  judgment,
award,  order or writ,  injunction or decree of any court,  governmental body or
arbitrator  which would conflict with or be breached by the execution,  delivery
or performance of this  Agreement and there is (a) no action,  suit,  dispute or
governmental,  administrative,  arbitration or regulatory  proceeding pending or
threatened nor (b) any investigation  pending or threatened  against or relating
to Schwarz  Pharma  which,  in each case,  could  prevent  Schwarz  Pharma  from
carrying out its obligations under this Agreement.

13.      TERM OF AGREEMENT AND TERMINATION.

         13.1 Term.  Unless  terminated  in  accordance  with this Article 13 or
Section 3.4,  this  Agreement  shall expire upon the later of (i) 10 years after
commencement  of marketing the Product in a Major Country or (ii)  expiration of
the last to expire of the Lynx  Patents  issued in the  Territory.  The  Parties
agree  that at least two (2) years  prior to the  expiration  of this  Agreement
under this Section 13.1 the Parties will meet, discuss in good faith and attempt
to reach mutually  acceptable  agreement to provide for Lynx's continuing supply
to Schwarz Pharma of Product and economic terms for such supply.  Schwarz Pharma
shall be  obligated  to  continue  to  purchase  Product  from Lynx  under  such
agreement so long as Lynx is able to supply the Product at prices  comparable to
those available on the market and in appropriate quantities and quality. As used
herein, "comparable" means within [REDACTED] of the price of supply available on
the market. If Lynx is unable to meet such requirements, then under the terms of
such agreement  Schwarz Pharma may thereafter  purchase the Product from a Third
Party or manufacture it itself.

         13.2 Termination For Material  Breach.  Each Party shall have the right
to terminate this Agreement  after written notice to the other that the other is
in material  breach of this  Agreement,  unless the other Party cures the breach
before the expiration of 90 days after such written notice.  Notwithstanding the
foregoing,  Lynx may  terminate  this  Agreement  in the  event  Schwarz  Pharma
breaches  a  payment  obligation  hereunder  and  thereafter  fails to make full
payment of amounts  due Lynx  within 30 days after  written  notice from Lynx to
Schwarz Pharma, provided, however, that Schwarz Pharma may withhold a particular
payment  for so long as Schwarz  Pharma is  pursuing  in good faith a claim that
Lynx has not performed the specific  tasks  necessary to earn such payment.  Any
failure by Lynx to  terminate  this  Agreement  for late  payments  shall not be
deemed a waiver of its right to  terminate  this  Agreement  in the future for a
future late payment by Schwarz Pharma.

         13.3 Termination without Cause.  Schwarz Pharma shall have the right to
terminate the Agreement at any time without the  requirement  of showing  cause,
upon 90

 
                        CONFIDENTIAL TREATMENT REQUESTED
                                      44.
<PAGE>

days prior written notice if given prior to achieving Regulatory  Approval,  and
upon 120  days prior written notice thereafter.

                  (a) If Schwarz  Pharma elects to terminate  under this Section
13.3 prior to Regulatory  Approval,  and such  termination is not due to serious
safety or toxicity  concerns  regarding  the Licensed  Compound when used in the
Field (as such phrase is defined in subsection  (c) below),  then Schwarz Pharma
shall pay Lynx the following  amounts:  (i) if the  termination  occurs prior to
completion of the Multi-Dose Efficacy Studies, Schwarz Pharma shall pay Lynx all
costs and expenses of completing such studies  according to the agreed Protocols
and budgets for such studies;  (ii) if the  termination  occurs  during  ongoing
Phase III (or foreign  equivalent)  studies,  Schwarz  Pharma  shall pay Lynx an
amount  equivalent to all costs and expenses that Schwarz  Pharma would incur in
terminating  such  studies,  and also will loan to Lynx an amount  (the  "Loan")
equal to the costs and  expenses of  conducting  such  studies  according to the
agreed  Protocols  and  budgets  for  such  studies  for the  [REDACTED]  period
following termination of the Agreement,  but subject to a maximum of $[REDACTED]
million.  Such Loan will be interest  free for the first  [REDACTED]  months and
thereafter will bear interest at the Prime Rate as established by Citibank.  The
Loan will be repaid  within  [REDACTED]  years of Schwarz  Pharma  providing the
loan,  but may be  converted  at any time in such  period  at  Schwarz  Pharma's
election  into the common stock of Lynx at the then  current  market  price,  as
established by a national market quotation  system,  if Lynx stock is so traded,
or if not as determined by Lynx's Board of Directors in good faith.

                  (b) If termination under this Section is due to serious safety
or toxicity  concerns,  then Schwarz Pharma shall not be responsible  for making
the  foregoing  payments but will be  responsible  for all costs and expenses of
terminating  any  ongoing  clinical  trials.  After any  termination  under this
Section,  Schwarz  Pharma  covenants  that  neither  it nor  its  Affiliates  or
Sublicensees will make, use or sell Licensed Compounds or Products. It is agreed
that if Lynx,  after  termination by Schwarz  Pharma under this Section,  enters
into a license  agreement with a Third Party granting such Third Party the right
to  develop,  market or sell the  Licensed  Compound as a product for use in the
Field, then Lynx will repay to Schwarz Pharma, out of the revenues received from
such Third  Party  under such  Agreement,  any  amounts  paid to Lynx by Schwarz
Pharma  under this Section  13.3  (excluding  the Loan if repaid or converted to
equity).  Such  repayment  shall be made at a rate limited to  [REDACTED] of any
amounts of such revenues actually received by Lynx. Lynx grants Schwarz Pharma a
security interest in such revenues to secure repayment of the Loan in accordance
with the terms hereof,  and consents to the filing of an  appropriate  financing
statement to perfect the security interest.

                  (c) As used in this  Section,  the phrase  "serious  safety or
toxicity  concerns"  means that the Safety  Monitoring  Board for the applicable
clinical  trial  conducted  hereunder has  determined  that a safety or toxicity
issue  with  respect to the 

                                      45.


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