LYNX THERAPEUTICS INC
10-Q, 1998-08-12
MEDICINAL CHEMICALS & BOTANICAL PRODUCTS
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                                  UNITED STATES
                       SECURITIES AND EXCHANGE COMMISSION
                             WASHINGTON, D.C. 20549


                                    FORM 10-Q


  X     QUARTERLY  REPORT  PURSUANT  TO  SECTION  13 OR 15(d) OF THE  SECURITIES
- -----   EXCHANGE ACT OF 1934 FOR THE QUARTERLY PERIOD ENDED JUNE 30, 1998.

                                      OR

        TRANSITION  REPORT  PURSUANT  TO SECTION  13 OR 15(d) OF THE  SECURITIES
- -----   EXCHANGE ACT OF 1934 FOR THE TRANSITION PERIOD FROM_________ TO________.
 

                         Commission File Number 0-22570


                             Lynx Therapeutics, Inc.
             (Exact name of registrant as specified in its charter)


                Delaware                                    94-3161073
      (State or other jurisdiction of                    (I.R.S. Employer
      incorporation or organization)                     Identification No.)


         3832 Bay Center Place
                Hayward, CA                                   94545
     (Address of principal executive offices)                (Zip Code)


                                 (510) 670-9300
              (Registrant's telephone number, including area code)


Indicate by check mark whether the registrant (1) has filed all reports required
to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during
the  preceding 12 months (or for such  shorter  period that the  Registrant  was
required  to file  such  reports),  and  (2) has  been  subject  to such  filing
requirements for the past 90 days.

                            Yes    X      No
                                -------      ------


The  number  of  shares  of Common  Stock  outstanding  as of July 31,  1998 was
11,121,963.  The  aggregate  market value of the common stock of the  Registrant
held by non-affiliates as of July 31, 1998 was $106,908,592.



                                                                    Page 1 of 11

<PAGE>

                                              Lynx Therapeutics, Inc.

<TABLE>
                                                       INDEX


<CAPTION>
PART I            FINANCIAL INFORMATION (unaudited)                                                            Page
<S>                                                                                                              <C>
Item 1.           Financial Statements

                  Condensed Consolidated Balance Sheets - June 30, 1998
                      and December 31, 1997...............................................................        3

                  Condensed Consolidated Statements of Operations - three and six months
                       ended June 30, 1998 and 1997.......................................................        4

                  Condensed Consolidated Statements of Cash Flows - six months
                      ended June 30, 1998 and 1997........................................................        5

                  Notes to Condensed Consolidated Financial Statements....................................        6

Item 2.           Management's Discussion and Analysis of
                      Financial Condition and Results of Operations.......................................        8


PART II           OTHER INFORMATION

Item 1.           Legal Proceedings.......................................................................       10

Item 2.           Changes in Securities...................................................................       10

Item 3.           Defaults Upon Senior Securities.........................................................       10

Item 4.           Submission of Matters to a Vote of Security Holders.....................................       10

Item 5.           Other Information......................................................................        10

Item 6.           Exhibits and Reports on Form 8-K.......................................................        10

Signatures        ........................................................................................       11
</TABLE>


                                                                    Page 2 of 11
<PAGE>


PART I            FINANCIAL INFORMATION
Item 1.           Financial Statements
<TABLE>
                                              Lynx Therapeutics, Inc.
                                       CONDENSED CONSOLIDATED BALANCE SHEETS
                                                  (In thousands)
<CAPTION>
                                                                              June 30,           December 31,
                                                                                1998                 1997*
                                                                       --------------------------------------------
                                                                            (Unaudited)
<S>                                                                           <C>                  <C>
Assets
Current assets:
   Cash and cash equivalents                                                  $   5,669            $    8,798
   Short-term investments                                                        15,824                16,132
   Accounts receivable                                                              108                   244
   Other current assets                                                             318                   199
                                                                       --------------------------------------------
Total current assets                                                             21,919                25,373

Property and equipment:
   Leasehold improvements                                                         4,181                 3,795
   Laboratory and other equipment                                                 3,023                 3,562
                                                                       --------------------------------------------
                                                                                  7,204                 7,357
   Less accumulated depreciation and amortization                                (3,007)               (3,588)
                                                                       --------------------------------------------
Net property and equipment                                                        4,197                 3,769

Notes receivable from employees                                                      34                   125
Long-term investments                                                               883                   ---
                                                                       --------------------------------------------
                                                                              $  27,033            $   29,267
                                                                       ============================================
Liabilities and stockholders' equity
Current liabilities:
   Accounts payable                                                           $     583            $      210
   Accrued compensation                                                             297                   289
   Accrued professional fees                                                        138                   179
   Deferred revenue from related parties                                            917                 2,292
   Other accrued liabilities                                                        419                   528
                                                                       --------------------------------------------
Total current liabilities                                                         2,354                 3,498

Other noncurrent liabilities                                                        194                   179

Stockholders' equity:
   Preferred stock                                                                  ---                27,189
   Common stock                                                                  74,587                46,640
   Notes receivable from stockholders                                              (423)                 (460)
   Deferred compensation                                                         (4,768)               (5,394)
   Accumulated other comprehensive income (loss)                                      2                   (45)
   Accumulated deficit                                                          (44,913)              (42,340)
                                                                       --------------------------------------------
Total stockholders' equity                                                       24,485                25,590
                                                                       --------------------------------------------
                                                                              $  27,033            $   29,267
                                                                       ============================================
<FN>
*The Balance  Sheet  amounts at December 31, 1997 have been derived from audited
 financial statements at that date but do not include all of the information and
 footnotes  required by generally  accepted  accounting  principles for complete
 financial statements.


                             See accompanying notes.
</FN>
</TABLE>

                                                                    Page 3 of 11

<PAGE>

<TABLE>
                                              Lynx Therapeutics, Inc.
                                  CONDENSED CONSOLIDATED STATEMENTS OF OPERATIONS
                                     (In thousands, except per share amounts)
                                                    (Unaudited)
<CAPTION>


                                                                  Three Months Ended                Six Months Ended
                                                                       June 30,                         June 30,
                                                        -------------------------------------------------------------------
                                                                 1998               1997           1998           1997
                                                                 ----               ----           ----           ----
<S>                                                           <C>               <C>               <C>            <C>
        Net revenues:
           Revenues from collaborative arrangements
             with related parties                             $    687          $  1,224          $  1,375       $  2,287
           Other revenues                                            4                98               130            170
                                                        -------------------------------------------------------------------
        Total revenues                                             691             1,322             1,505          2,457

        Operating  expenses:
           Research and development                              3,071             3,377             6,913          6,452
           General and administrative                              509               591             1,001          1,017
                                                        -------------------------------------------------------------------
        Total operating  expenses                                3,580             3,968             7,914          7,469
                                                        -------------------------------------------------------------------

        Loss from operations                                    (2,889)           (2,646)           (6,409)        (5,012)

        Interest income                                            324               133               660            304
        Gain on sale of Antisense Business                         ---               ---             3,176            ---
                                                        -------------------------------------------------------------------
        Net loss                                              $ (2,565)         $ (2,513)         $ (2,573)      $ (4,708)
                                                        ===================================================================

        Basic and diluted net loss per share                  $  (0.24)         $  (0.89)         $  (0.31)      $  (1.69)
                                                        ===================================================================

        Shares used in per share computation                    10,884             2,815             8,306          2,787
                                                        ===================================================================

<FN>
                             See accompanying notes.
</FN>
</TABLE>

                                                                    Page 4 of 11
<PAGE>

<TABLE>
                                              Lynx Therapeutics, Inc.
                                  CONDENSED CONSOLIDATED STATEMENTS OF CASH FLOWS
                                                  (In thousands)
                                                    (Unaudited)
<CAPTION>


                                                                                         Six Months Ended
                                                                                             June 30,
                                                                                ------------------------------------
                                                                                       1998             1997
                                                                                       ----             ----
<S>                                                                                  <C>              <C>
Cash flows from operating activities
Net loss                                                                             $   (2,573)      $   (4,708)
Adjustments to reconcile net loss to net cash used in operating activities:
     Depreciation and amortization                                                          653              631
     Amortization of deferred compensation                                                  626              293
     Non-cash consideration received and costs incurred on the sale of the
       Antisense Business, net                                                             (418)              --
     Changes in operating assets and liabilities:
         Accounts receivable                                                                136              (73)
         Other current assets                                                              (119)              91
         Accounts payable                                                                   373              (80)
         Accrued liabilities                                                               (142)            (153)
         Deferred revenue from related party                                             (1,375)          (2,126)
         Other noncurrent liabilities                                                        15               16
                                                                                ------------------------------------
Net cash provided by (used in) operating activities                                      (2,824)          (6,109)

Cash flows from investing activities
Purchases of short-term investments                                                     (18,260)              --
Maturities of short-term investments                                                     18,615            1,968
Purchases of property and equipment                                                      (1,290)          (1,243)
Other assets                                                                                  5             (264)
                                                                                ------------------------------------
Net cash provided by (used in) investing activities                                        (930)             461

Cash flows from financing activities
Issuance of common stock                                                                    625              257
                                                                                ------------------------------------
Net cash provided by (used in) financing activities                                         625              257
                                                                                ------------------------------------

Net increase (decrease) in cash and cash equivalents                                     (3,129)          (5,391)
Cash and cash equivalents at beginning of period                                          8,798           12,109
                                                                                ------------------------------------
Cash and cash equivalents at end of period                                           $    5,669       $    6,718

Supplemental schedule of non-cash investing activities
Following are the effects of the non-cash transactions relating to the
  sale of the Antisense Business     
Assets sold, net of depreciation                                                     $      210               --
                                                                                ====================================
Inex stock received                                                                  $      882               --
                                                                                ====================================
<FN>
                             See accompanying notes.
</FN>
</TABLE>
                                                                    Page 5 of 11

<PAGE>


                             Lynx Therapeutics, Inc.
              NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

                                  June 30, 1998
                                   (Unaudited)


1.       Ownership and Nature of Business

         Lynx Therapeutics,  Inc. ("Lynx" or the "Company"), was incorporated in
February 1992 under the laws of the State of Delaware. Lynx is currently focused
on developing its proprietary, highly parallel technologies for the handling and
characterization  of DNA  molecules  and  fragments.  The Company  expects these
technologies  will  contribute  to  a  number  of  applications  including  gene
discovery,    characterization    of   gene    function,    identification    of
disease-associated  genomic  sequences such as  polymorphisms,  and the study of
non-human genomes such as commercially important plants and animals.

2.       Basis of Presentation

         The accompanying  condensed  consolidated financial statements included
herein have been prepared by the Company  without  audit,  pursuant to the rules
and  regulations  promulgated  by the Securities  and Exchange  Commission  (the
"Commission"). Certain prior year amounts have been reclassified to conform with
current year presentation. Certain information and footnote disclosures normally
included in financial  statements prepared in accordance with generally accepted
accounting  principles  have  been  omitted  pursuant  to  Commission  rules and
regulations;  nevertheless,  the  Company  believes  that  the  disclosures  are
adequate to make the  information  presented not  misleading.  In the opinion of
management, the financial statements contain all adjustments, consisting only of
normal  recurring  adjustments,   necessary  to  present  fairly  the  financial
position,  results of  operations  and cash flows of the Company for the interim
periods  presented.  The  results of  operations  for the quarter and six months
ended June 30, 1998, are not necessarily  indicative of the results for the full
year.

         The unaudited condensed  consolidated  financial statements include all
accounts of the Company and its wholly owned subsidiary, Lynx GmbH, formed under
the laws of the  Federal  Republic  of  Germany.  All  significant  intercompany
balances have been eliminated.

         These  financial  statements  should  be read in  conjunction  with the
audited  consolidated  financial  statements and notes thereto for the Company's
year ended  December 31, 1997,  included in its annual report on Form 10-K filed
with the Commission.

3.       Summary of Significant Accounting Policies

Net Loss Per Share

         Basic loss per share is calculated  by dividing net loss  applicable to
common shareholders by the weighted average number of common shares outstanding,
net of certain common shares  outstanding which are subject to continued vesting
and the Company's right of repurchase,  while diluted EPS reflects the potential
dilution of securities  that could share in the earnings of the Company,  to the
extent  such  securities  are  dilutive.  Basic and  diluted  loss per share are
equivalent for all periods  presented herein due to the Company's net losses for
such periods.  The Company has adopted SFAS 128 for annual and interim financial
statements  issued after  December 15, 1997, and has calculated and restated EPS
in  accordance  with SFAS 128 for each  period in which an income  statement  is
reported.  The following  have been excluded  from the  calculation  of loss per
share  because  the effect of  inclusion  would be  antidilutive:  approximately
212,000  common  shares which are  outstanding  but are subject to the Company's
right of repurchase  which expires ratably over 5 years, and options to purchase
approximately  1,378,000  shares of common stock at a weighted  average price of
$5.11 per share.  Additionally,  all  periods  prior to March 31,  1998  exclude
approximately  500,000 shares of Series B, C, and D convertible preferred stock.
On  March  31,  1998,  the  preferred  stock  converted  to  common  stock  on a
ten-for-one  basis.  The converted  shares are included in the  calculations  of
basic EPS in all periods including, and subsequent to, March 31, 1998.


                                                                    Page 6 of 11

<PAGE>


Comprehensive Income

         As of January 1, 1998,  the  Company  adopted  Statement  of  Financial
Accounting  Standards,  No. 130 ("SFAS 130"),  "Comprehensive  Income." SFAS 130
establishes new rules for the reporting and display of comprehensive  income and
its components.  SFAS 130 requires  unrealized  gains or losses on the Company's
available-for-sale  securities, which prior to adoption were reported separately
in shareholders'  equity, to be included in other  comprehensive  income.  Prior
year financial  statements have been reclassified to conform to the requirements
of SFAS 130.

         Total  comprehensive  loss during the quarters  ended June 30, 1998 and
1997 was $2.6 and $2.5 million, respectively.  During the first half of 1998 and
1997,  total  comprehensive  loss  amounted to $2.6  million  and $4.7  million,
respectively.

4.       Collaborative Arrangements

         Effective May 1, 1998, the Company  amended and restated the amendment,
dated September 1, 1997, to the Technology  Development and Services  Agreement,
dated October 2, 1995,  between Lynx and Hoechst  Marion  Roussel,  Inc. and its
affiliates (collectively, "Hoechst"). The restated amendment extends the term of
the agreement and will have no impact on the operations of the Company. 


                                                                    Page 7 of 11

<PAGE>


Item 2.  Management's Discussion and Analysis of Financial Condition and Results
         of Operations

         Except for the historical  information  contained herein, the following
discussion   contains   forward-looking   statements   that  involve  risks  and
uncertainties.  The Company's actual results could differ  materially from those
discussed  here.  Factors  that could cause or  contribute  to such  differences
include,  but are not limited to, those discussed in this section, as well as in
the Company's  annual report (Form 10-K) filed with the  Securities and Exchange
Commission for the fiscal year ended December 31, 1997.

Overview

Results of Operations

Revenue

         Revenues for the second  quarter and  six-month  period ending June 30,
1998,  were $0.7  million and $1.5  million,  respectively,  as compared to $1.3
million and $2.5 million for the second quarter and six-month period ending June
30,  1997,  respectively.  Revenues  for 1998 include $0.7 million in the second
quarter and $1.4 million in the six-month  period earned under an agreement with
BASF AG ("BASF") for access to gene expression analysis services to be performed
by Lynx. The 1997 revenue  includes $0.7 million from BASF and $0.4 million from
Hoechst in the second  quarter and $1.4  million from BASF and $0.8 million from
Hoechst in the  six-month  period,  earned under  agreements  for access to gene
expression analysis services.

Operating Expenses

         Research and  development  expenses of $3.1 million in the three months
ended June 30, 1998,  compared to $3.4 million in the same period of 1997,  were
lower  primarily  due to the  March  1998  sale of the  Company's  portfolio  of
phosphorothioate   antisense   patents  and   licenses,   and  its   therapeutic
oligonucleotide manufacturing facility (collectively, the "Antisense Business").
Research and  development  expenses in the six-month  period ended June 30, 1998
were $6.9  million,  compared to $6.5  million in the six months  ended June 30,
1997,  reflecting the Company's efforts to build its production capacity for the
anticipated commercial application of its technologies. Lynx expects to continue
to incur substantial  research and development  expenses due to planned spending
for  ongoing  technology  development  and  implementation,   and  new  research
applications.

         General and administrative  expenses were $0.5 million and $0.6 million
in the three months ended June 30, 1998 and 1997, respectively. The decrease was
the  result of lower  outside  professional  fees.  General  and  administrative
expenses  in the  six-month  period  ended  June 30,  1998  were  $1.0  million,
unchanged  from the  six-month  period  ended  June 30,  1997.  Lynx  expects to
continue to incur substantial administrative expenses in support of its research
and development efforts.

Interest Income

         Interest  income was $0.3 million and $0.7 million in the three and six
months  ended June 30,  1998,  compared to $0.1  million and $0.3 million in the
three and six months ended June 30, 1997. The increase was due to higher average
cash balances in 1998 than in the same periods in 1997.

Gain on Sale of Antisense Business

         Other  income of $3.2  million for the six months  ended June 30, 1998,
was  comprised  of the gain on the sale of  Lynx's  Antisense  Business  to Inex
Pharmaceuticals  Corporation ("Inex") in March 1998. As partial consideration in
this transaction,  Lynx received $3 million in cash and will receive 1.2 million
shares of Inex common stock, in three equal installments, with the first 400,000
shares  received on March 10,  1998,  and the second and third  installments  of
stock to be received no later than two and three years,  respectively,  from the
closing  date of the  transaction.  The Inex  common  stock  received by Lynx is
subject  to  certain  restrictions  on  trading  for  specific  periods  of time
following receipt by Lynx.

                                                                    Page 8 of 11

<PAGE>


Liquidity and Capital Resources

         Net cash  used in  operating  activities  of $2.8  million  for the six
months  ended  June 30,  1998,  differed  from the net loss for the same  period
primarily due to current period recognition of a portion of previously  deferred
revenue,  deferred  compensation  expense,  depreciation and  amortization,  the
non-cash  consideration received and costs incurred on the sale of the Antisense
Business, and changes in other current assets and liabilities.  Net cash used in
investing activities related to purchases of capital equipment, partially offset
by  maturities  of  short-term  investments.  Net  cash  provided  by  financing
activities  related to the  exercise  of stock  options by  employees.  Cash and
equivalents were $5.7 million at June 30, 1998.

         Lynx   plans  to  use   available   funds  for  the   development   and
implementation of its massively parallel  technologies and to build capacity for
their early commercial uses.  Pending such uses as described above, Lynx intends
to invest its excess  cash in  short-term,  investment  grade,  interest-bearing
securities or certificates of deposit.

         Since  commencing  operations  as  an  independent  company,  Lynx  has
obtained funding for its operations  through sales of preferred and common stock
to  venture  capital  investors,   institutional  investors,  and  collaborative
partners;  revenue from  collaborative  research and  development  arrangements,
interest income,  product sales, and government  grants.  The cost,  timing, and
amount  of  funds  required  for  specific  uses by  Lynx  cannot  be  precisely
determined  at this time and will be based upon Lynx's  progress in its research
and development,  administrative and legal costs, the establishment of corporate
collaborations and other arrangements, and the availability of alternate methods
of financing.

         Lynx  expects  to  incur   substantial  and  increasing   research  and
development  expenses  and  intends  to seek  additional  financing,  as needed,
through  contractual  arrangements  with  corporate  partners and equity or debt
offerings.  There can be no assurance that any additional  financing required by
Lynx will be available or, if available, will be on terms favorable to Lynx. The
Company  believes  that,  at  current  spending  levels,  its  existing  capital
resources and interest income thereon will enable it to maintain its current and
planned operations through mid-1999.

Impact of Year 2000

         The Company has  completed  an  assessment  of its  computer  operating
systems and related  software and, with only a few minor  exceptions,  has found
them to be Year 2000  compliant.  The  Company's  exposure is limited due to the
fact that most of its computers and software were acquired  within the past five
years and were Year 2000 compliant at purchase. The Company plans to replace the
operating  systems on the few  non-compliant  computers  before 2000 and expects
that the  cost  will be  immaterial.  The  Company  believes  that  even if such
modifications  are not made,  there  will be no  adverse  impact on  operations.
However,  Year 2000  problems may affect the computer  systems of the  Company's
business partners,  vendors, customers, and financial service organizations with
which the Company interacts.  The Company is in the process of developing a plan
to determine the impact that third parties which are not Year 2000 compliant may
have on the operations of the Company.  There can be no assurance that such plan
will be able to address fully, or at all, the "Year 2000 issue" which could have
a material adverse effect upon the Company's  business,  financial condition and
results of operations.

                                                                    Page 9 of 11

<PAGE>


PART II      OTHER INFORMATION

Item 1.      Legal Proceedings
                 None

Item 2.      Changes in Securities
                 None

Item 3.      Defaults upon Senior Securities
                 None

Item 4.      Submission of Matters to a Vote of Security Holders
             At the Company's 1998 annual meeting of  stockholders  held on
             May 18, 1998, stockholders voted on the following:

             Proposal I - Election of Directors:

                 Nominee                            For                 Withheld
                 -------                            ---                 --------
                 Sam Eletr                       7,976,262                41,429
                 William K. Bowes                7,975,920                41,771
                 Sydney Brenner                  8,013,392                 4,299
                 James C. Kitch                  7,970,360                47,331
                 Kathleen D. La Porte            7,975,882                41,809
                 Craig C. Taylor                 7,976,269                41,422
                                             
             Proposal  II - Approval  of the 1992  Stock  Option  Plan,  as
             Amended:
                 For              Against           Abstain            Non-Vote
                 ---              -------           -------            --------

               6,158,126          142,968         1,045,056            671,541

             Proposal III - Approval of the 1998 Employee Stock Purchase Plan:
                 For              Against           Abstain            Non-Vote
                 ---              -------           -------            --------

               6,180,773          120,501         1,044,876            671,541

             Proposal IV - Ratification of Selection of Independent Auditors:
                 For              Against           Abstain            Non-Vote
                 ---              -------           -------            --------

               6,987,458            2,089           483,144                   0

Item 5.      Other Information
                 Pursuant to the Company's bylaws, stockholders who wish to
                 bring  matters or propose  nominees  for  director  at the
                 Company's 1999 annual meeting of stockholders must provide
                 specified  information to the Company before  December 14,
                 1998 (unless  such  matters are included in the  Company's
                 proxy   statement   pursuant   to  Rule  14a-8  under  the
                 Securities Exchange Act of 1934, as amended).

Item 6.      Exhibits and Reports on Form 8-K.
                      a)  Exhibits  -  The  following  documents  are  filed  as
                          Exhibits to this report:

                      Exhibit Number         Description
                      --------------         -----------

                           10.36*        Amended and Restated First Amendment to
                                         Technology   Development  and  Services
                                         Agreement,  dated May 1, 1998,  between
                                         the Company and Hoechst Marion Roussel,
                                         and its affiliates.

                           27.1          Financial Data Schedule

                  *Portions of this agreement have been deleted  pursuant to our
                  request for confidential treatment.

                      b)  No reports on Form 8-K were filed  during the  quarter
                          ended June 30, 1998

                                                                   Page 10 of 11


<PAGE>


                                   SIGNATURES

         Pursuant to the  requirements  of the Securities  Exchange Act of 1934,
the  registrant  has duly  caused  this report to be signed on its behalf by the
undersigned, thereunto duly authorized.

                                            LYNX THERAPEUTICS, INC.

                                             /s/ Sam Eletr
                                            ------------------------------------
                                            By:      Sam Eletr, Ph.D.
                                                     Chief Executive Officer and
                                                     Chairman of the Board
                                            Date:    August 12, 1998

                                             /s/ Edward C. Albini
                                            ------------------------------------
                                            By:      Edward C. Albini
                                                     Chief Financial Officer
                                                     (Principal Financial and
                                                     Accounting Officer)
                                            Date:    August 12, 1998


                                                                   Page 11 of 11
<PAGE>


                                  EXHIBIT INDEX



    Exhibit Number         Description
    --------------         -----------

         10.36*        Amended  and  Restated  First   Amendment  to  Technology
                       Development  and Services  Agreement,  dated May 1, 1998,
                       between the Company and Hoechst Marion  Roussel,  and its
                       affiliates.

         27.1          Financial Data Schedule

*Portions of this agreement have been deleted  pursuant to our
request for confidential treatment.





                                                                   EXHIBIT 10.36
                                         
                                           *** TEXT OMITTED AND FILED SEPARATELY
                                                CONFIDENTIAL TREATMENT REQUESTED
                                          UNDER 17 C.F.R. SECTIONS.200.80(B)(4),
                                                            200.83 AND 240.24B-2


                              AMENDED AND RESTATED
                           RESTATED FIRST AMENDMENT TO
                  TECHNOLOGY DEVELOPMENT AND SERVICES AGREEMENT


This Amended and Restated First  Amendment (" Restated First  Amendment") to the
Technology Development and Services Agreement  ("Agreement") is made and entered
into as of the first day of May,  1998 (the  "Amended  Effective  Date") by LYNX
THERAPEUTICS, INC., a Delaware corporation, and its majority-owned subsidiaries,
including  SPECTRAGEN,  INC.,  (collectively  referred to as "Lynx") and Hoechst
Marion  Roussel,  Inc.,  a  Delaware  corporation,  to whom  the  Agreement  was
assigned,  and its  affiliates  ("HMRI"),  for the purpose of  replacing  in its
entirety the Restated First  Amendment to the Agreement dated September 1, 1997,
which as of the Amended Effective Date shall have no further force or effect.

                                    RECITALS

         WHEREAS,  Lynx and HMRI agree that the Practical  Application Milestone
as set forth in the Agreement may not be achievable as originally defined;

         WHEREAS,  HMRI  continues to desire early,  preferred  access to Lynx's
library analysis and other subscription services;

         NOW  THEREFORE,  in  consideration  of the  foregoing  premises and the
covenants and promises in the Agreement and in this Restated First Amendment.


                                    ARTICLE 1

                                   DEFINITIONS

         Capitalized  terms used in this Restated First Amendment shall have the
meanings  ascribed  to them in the  Agreement  unless  otherwise  defined  in or
amended by this Restated First Amendment.

         1.1  "Massively  Parallel  Signature  Sequencing"  or "MPSS"  means the
acquisition of at least  [...***...]  contiguous bases (a "Signature  Sequence")
from each of at least [...***...] templates sampled from a given cell culture or
tissue cDNA library or of such other information


- -------------------------
* CONFIDENTIAL TREATMENT REQUESTED

                                                                   
<PAGE>


as may be obtained by customers of technology  subscription  services  developed
and made available from time to time by Lynx.

         1.2 "MPSS Library  Analysis" means a report containing each [...***...]
base sequence and its abundance  within the  [...***...]  or more cCNA templates
extracted from a given sample or such other  information as can be generated and
is provided by Lynx to its other subscription service customers.

         1.3  No amendment is made to Article 1.3.

         1.4 "Practical  Application Milestone" as defined in Article 1.4 of the
Agreement and Exhibit A thereto are no longer applicable.


                                    ARTICLE 2

                         DEVELOPMENT OF MPSS TECHNOLOGY

         2.1  Lynx Program.  Lynx shall continue to use commercially  reasonable
efforts  consistent with its normal business practices and objectives to develop
its sequencing and solid phase cloning  technologies and to define,  develop and
offer to customers in the ordinary course of its business  subscription services
based on such technologies.

         2.2  Reports  and  Information.  Periodically  during  the term of this
Agreement,  and in any  event at least  once per  calendar  quarter,  Lynx  will
provide Hoechst written reports  summarizing its technical progress to date, its
plans with  respect to the nature of  subscription  services  that it intends to
offer and its  assessment  of how  customers  could use such services to further
their research objectives.  If requested by Hoechst,  Lynx will provide relevant
supporting data and studies to enable Hoechst to assess its interest in securing
access  to such  services.  All  such  reports,  including  supporting  data and
studies,  and all information  contained therein,  shall be deemed "Confidential
Information"  of Lynx under Article 4 hereof.

         2.3  Ownership of  Technology.  No  amendment is made to this  Article,
except  that the  parties  agree to amend the last  sentence  thereof  if and as
necessary to accurately describe the services that Hoechst ultimately determines
to access  hereunder. 

         2.4  Development  Payments to Lynx. Lynx acknowledges  that Hoechst has
paid to Lynx  Three  Million  U.S.  Dollars  ($3,000,000),  in part,  for Lynx's
commitment to undertake the  development of  technologies  that may be useful to
Hoechst.  Lynx  agrees  that no  additional  payment  by HMRI to Lynx  shall  be
required  for  Lynx's  continued  development  work.  If in  the  course  of the
Development  Program Lynx is able to establish to HMRI's  satisfaction  that the
services offered or to be offered by Lynx are applicable for HMRI's purposes and
fulfill HMRI's needs as determined by HMRI at its sole discretion then HMRI will
pay to Lynx a  technology  access  fee to be  negotiated  but of not  more  than
[...***...] U.S. Dollars  [...***...] within thirty (30) days. In the event that
a third party (other than BASF) has paid Lynx less than [...***...]


- -------------------------
* CONFIDENTIAL TREATMENT REQUESTED

                                        2

<PAGE>

U.S. Dollars  [...***...] as a technology access fee, than HMRI will pay no more
than such third  party  technology  access  fee less  [...***...]  U.S.  Dollars
[...***...].

         2.5 If Lynx notifies HMRI that it has developed the MPSS  technology to
the extent that it is being accessed and used by another party, HMRI will at its
sole  discretion  determine the  usefulness of the technology for HMRI's purpose
and decide whether to access the technology under the conditions  outlined under
2.4. A decision  by HMRI  during  the term of this  Agreement  not to access the
technology does not constitute a termination of the Agreement.



                                    ARTICLE 3

                               LYNX MPSS SERVICES

         No amendment is made to this Article  except that (a) the parties agree
to amend the  description  of the  services to be offered if and as necessary to
accurately  describe the services that Hoechst  ultimately  determines to access
hereunder, (b) HMRI no longer requires that Lynx limit its services to a maximum
of three  parties and (c) the cost of the renewal of the  subscription  shall be
renegotiated  in good  faith  according  to the  then  prevailing  circumstances
regarding third party subscribers and the amount of work to be done.

                                    ARTICLE 4

                                 CONFIDENTIALITY

         The  provisions  of this article the  Agreement are not amended by this
Restated First Amendment.

                                    ARTICLE 5

                              TERM AND TERMINATION

         5.1 The term of the Agreement shall be extended to [...***...], and may
be extended for another  [...***...] at HMRI's discretion upon written notice to
Lynx. If the  Agreement  terminates  pursuant to this section,  Lynx agrees that
HMRI shall be entitled to a credit of [...***...] U.S. Dollars  [...***...] with
regard to any future  technology  access fee and any such technology  access fee
and  subscription  fee  shall be  reduced  as set forth in this  Restated  First
Amendment.  All other terms and conditions of Article 5 of the Agreement are not
amended by this Restated First Amendment.

                                    ARTICLE 6

                         REPRESENTATIONS AND WARRANTIES



- -------------------------
* CONFIDENTIAL TREATMENT REQUESTED

                                        3
<PAGE>

         The provisions of this article of the Agreement are not amended by this
Restated First Amendment.

                                    ARTICLE 7

                                  MISCELLANEOUS

         The  provisions of the Agreement are not amended by this Restated First
Amendment  except  that all  notices to Hoechst  pursuant  to Article 7.6 of the
Agreement shall hereafter be delivered to

Hoechst Marion Roussel, Inc.
2110 East Galbraith Road
Cincinnati, OH  42512

Attention:  General Patent Counsel


         IN WITNESS WHEREOF, the parties hereto have duly executed this Restated
First Amendment as of the date first written above.


LYNX THERAPEUTICS, INC.                 HOECHST MARION ROUSSEL, INC.


By:      /s/ Sam Eletr                  By:      /s/ Thomas Hofstaetter
   -----------------------------           -------------------------------------

Title:   Chief Executive Officer        Title:   Senior Vice President, Business
      --------------------------              ----------------------------------
                                        Development and Strategic Planning
                                        ----------------------------------------

Date:    June 8, 1998                   Date:    June 15, 1998
     ---------------------------             -----------------------------------


                                        4

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