ATLAS AIR INC
S-4/A, EX-99.4, 2000-06-13
AIR TRANSPORTATION, NONSCHEDULED
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<PAGE>   1

                                ATLAS AIR, INC.

                               OFFER TO EXCHANGE

                   PASS THROUGH CERTIFICATES, SERIES 2000-1,

              WHICH HAVE BEEN REGISTERED UNDER THE SECURITIES ACT
                              OF 1933, AS AMENDED,

                          FOR ANY AND ALL OUTSTANDING
                    PASS THROUGH CERTIFICATES, SERIES 2000-1

To Our Clients:

     Enclosed for your consideration is a prospectus of Atlas Air, Inc., a
Delaware corporation (the "Company" or "Atlas"), dated June 13, 2000 (the
"Prospectus"), and the letter of transmittal (the "Letter of Transmittal")
relating to the offer to exchange (the "Exchange Offer") registered Pass Through
Certificates, Series 2000-1 (the "New Certificates") for any and all outstanding
Pass Through Certificates, Series 2000-1 (the "Old Certificates") (CUSIP Nos.
049164AY2, U04885AG1, 049164BA3, U04885AH9, 049164BC9 and U04885AJ5), upon the
terms and subject to the conditions described in the Prospectus. The Exchange
Offer is being made in order to satisfy certain obligations of Atlas contained
in the Registration Rights Agreement dated as of January 28, 2000, between the
Company and the Initial Purchasers. Capitalized terms not defined herein are
defined in the Prospectus.

     This material is being forwarded to you as the beneficial owner of the Old
Certificates carried by us in your account but not registered in your name. A
tender of such Old Certificates may only be made by us as the holder of record
and pursuant to your instructions.

     Accordingly, we request instructions as to whether you wish us to tender on
your behalf the Old Certificates held by us for your account, pursuant to the
terms and conditions set forth in the enclosed Prospectus and Letter of
Transmittal.

     Your instructions should be forwarded to us as promptly as possible in
order to permit us to tender the Old Certificates on your behalf in accordance
with the provisions of the Exchange Offer. The Exchange Offer will expire at
5:00 P.M., New York City time, on July 17, 2000 (the "Expiration Date") (30
calendar days following the commencement of the Exchange Offer), unless extended
by the Company. Any Old Certificates tendered pursuant to the Exchange Offer may
be withdrawn at any time before 5:00 P.M., New York City time on the Expiration
Date.

     Your attention is directed to the following:

          1. The Exchange Offer is for any and all Old Certificates.

          2. The Exchange Offer is subject to certain conditions set forth in
     the Prospectus in the section captioned "The Exchange Offer -- Conditions."

          3. Any transfer taxes incident to the transfer of Old Certificates
     from the holder to the Company will be paid by the Company, except as
     otherwise provided in the Instructions in the Letter of Transmittal.

          4. The Exchange Offer expires at 5:00 P.M., New York City time, on the
     Expiration Date unless extended by the Company.

     If you wish to have us tender your Old Certificates, please so instruct us
by completing, executing and returning to us the instruction form set forth
below. The Letter of Transmittal is furnished to you for information only and
may not be used directly by you to tender Old Certificates.
<PAGE>   2

                INSTRUCTIONS WITH RESPECT TO THE EXCHANGE OFFER

     The undersigned acknowledge(s) receipt of your letter enclosing the
Prospectus, dated June 13, 2000, of Atlas Air, Inc., a Delaware corporation, and
the related specimen Letter of Transmittal.

     This will instruct you to tender the number of Old Certificates indicated
below held by you for the account of the undersigned, pursuant to the terms and
conditions set forth in the Prospectus and the related Letter of Transmittal.
(Check one)

<TABLE>
<S>        <C>        <C>
Box 1      [ ]        Please tender my Old Certificates held by you for my
                      account. If I do not wish to tender all of the Old
                      Certificates held by you for my account, I have identified
                      on a signed schedule attached hereto the number of Old
                      Certificates that I do not wish tendered.
Box 2      [ ]        Please do not tender any Old Certificates held by you for my
                      account.
</TABLE>

<TABLE>
<S>                                         <C>

Date:            , 2000                     -----------------------------------------------------------
                                                                   Signature(s)

                                            -----------------------------------------------------------
                                                             Please print name(s) here

                                            -----------------------------------------------------------
                                                             Area Code and Telephone No.
</TABLE>

     Unless a specific contrary instruction is given in the space provided, your
signature(s) hereon shall constitute an instruction to us to tender all Old
Certificates.

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